ISTA Research Explorer

Please note that ISTA Research Explorer no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.

207 Publications

Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps
E. Mascolo, R.E. Körei, S. Herrera-Álvarez, C.C. Guet, J. Crocker, G. Tkačik, Current Opinion in Genetics & Development 99 (2026).

[Published Version] View | DOI | Download Published Version (ext.) | arXiv

Marr's three levels for embryonic development: Information, dynamical systems, gene networks
D. Brückner, G. Tkačik, PRX Life 4 (2026).

[Published Version] View | Files available | DOI | arXiv

Nonlocal decoding of positional and correlational information during development
C.Y. Zhang, P. Mateu Hoyos, D. Brückner, G. Tkačik, Physical Review Letters 137 (2026).

[Published Version] View | Files available | DOI

Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges
E. Mascolo, R.E. Körei, N.O. Borst, N.H. Barton, J. Crocker, G. Tkačik, Current Opinion in Genetics and Development 98 (2026).

[Published Version] View | Files available | DOI

2026 | Published | Thesis | MS | IST-REx-ID: 22399 |

Studying the evolutionary systems biology of the lac operon
A. Spasić, Studying the Evolutionary Systems Biology of the Lac Operon, Institute of Science and Technology Austria, 2026.

[Published Version] View | Files available | DOI

2026 | Published | Journal Article | IST-REx-ID: 22363 |

Invariant nonequilibrium dynamics in gene regulation optimize information flow
B. Zoller, A. Benichou, T. Gregor, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 123 (2026).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction
C.Y. Zhang, A. Rosa, G. Sanguinetti, PRX Life 3 (2025).

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 18849 |

Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 18850 |

Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 18936 |

Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics 229 (2025).

2025 | Research Data | IST-REx-ID: 18991 |

Research data for the publication "Learning reshapes the hippocampal representation hierarchy"
H.S.C. Chiossi, (2025).

[Published Version] View | Files available | DOI

2025 | Research Data | IST-REx-ID: 19294 |

Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19453 |

Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 19626 |

Pulsatile basal gene expression as a fitness determinant in bacteria
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Research Data | IST-REx-ID: 19658 |

Token-driven totally asymmetric simple exclusion processes
G. Tkačik, (2025).

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19701 |

Information processing in biochemical networks
G. Tkačik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.

2025 | Published | Thesis | PhD | IST-REx-ID: 20357

Effect propagation in biological networks
N. Ruzickova, Effect Propagation in Biological Networks, Institute of Science and Technology Austria, 2025.

[Published Version] View | Files available | DOI

Quantifying the carbon footprint of conference travel: The case of NMR meetings
L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.

[Published Version] View | Files available | DOI

2025 | Published | Thesis | PhD | IST-REx-ID: 20811 |

Adaptive processes in biology and culture: Models of evolving vaccine resistance and the record statistics of innovation
S. Rella, Adaptive Processes in Biology and Culture: Models of Evolving Vaccine Resistance and the Record Statistics of Innovation, Institute of Science and Technology Austria, 2025.

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19785 |

Token-driven totally asymmetric simple exclusion processes
B. Kavcic, G. Tkačik, Physical Review E 111 (2025).

[Published Version] View | Files available | DOI | WoS

ISTA Research Explorer

Please note that ISTA Research Explorer no longer supports Internet Explorer versions 8 or 9 (or earlier).

207 Publications

Filters and Search Terms

Search

Filter Publications

Display / Sort

Export / Embed

ISTA Research Explorer

Please note that ISTA Research Explorer no longer supports Internet Explorer versions 8 or 9 (or earlier).

207 Publications

Filters and Search Terms

Search

Filter Publications

Research Group

Display / Sort

Export / Embed

Export Options