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192 Publications
2025 | Published | Journal Article | IST-REx-ID: 18850 | 
Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
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M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
2025 | Published | Journal Article | IST-REx-ID: 18849 |
Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
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T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
2025 | Research Data | IST-REx-ID: 19294 |
Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
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K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
2025 | Published | Journal Article | IST-REx-ID: 19453 |
Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
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H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
2025 | Research Data | IST-REx-ID: 18991 |
Research data for the publication "Learning reshapes the hippocampal representation hierarchy"
H.S.C. Chiossi, (2025).
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H.S.C. Chiossi, (2025).
2024 | Published | Journal Article | IST-REx-ID: 18902 |
Assessing the precision of morphogen gradients in neural tube development
M. Zagorski, N. Brandenberg, M. Lutolf, G. Tkačik, M.T. Bollenbach, J. Briscoe, A. Kicheva, Nature Communications 15 (2024).
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M. Zagorski, N. Brandenberg, M. Lutolf, G. Tkačik, M.T. Bollenbach, J. Briscoe, A. Kicheva, Nature Communications 15 (2024).
2024 | Epub ahead of print | Journal Article | IST-REx-ID: 18936 |
Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics (2024).
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R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics (2024).
2024 | Published | Journal Article | IST-REx-ID: 18307 |
Complex vaccination strategies prevent the emergence of vaccine resistance
S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International Journal of Organic Evolution 78 (2024) 1722–1738.
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S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International Journal of Organic Evolution 78 (2024) 1722–1738.
2024 | Published | Journal Article | IST-REx-ID: 17123 |
Information content and optimization of self-organized developmental systems
D. Brückner, G. Tkačik, Proceedings of the National Academy of Sciences 121 (2024).
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D. Brückner, G. Tkačik, Proceedings of the National Academy of Sciences 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 18525 |
Quantitative omnigenic model discovers interpretable genome-wide associations
N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 14901 |
Tipping points of space debris in low earth orbit
K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).
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K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).
2024 | Published | Thesis | IST-REx-ID: 15020 |
Genetic information and biological optimization
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.
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M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.
2023 | Published | Journal Article | IST-REx-ID: 14402 |
Beyond pulsed inhibition: Alpha oscillations modulate attenuation and amplification of neural activity in the awake resting state
F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. De Arcangelis, O. Shriki, Cell Reports 42 (2023).
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F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. De Arcangelis, O. Shriki, Cell Reports 42 (2023).
2023 | Published | Conference Abstract | IST-REx-ID: 14862 |
Complex vaccination strategies prevent the emergence of vaccine resistance
S. Rella, Y. Kulikova, A. Minnegalieva, F. Kondrashov, in:, European Journal of Public Health, Oxford University Press, 2023.
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S. Rella, Y. Kulikova, A. Minnegalieva, F. Kondrashov, in:, European Journal of Public Health, Oxford University Press, 2023.
2023 | Published | Journal Article | IST-REx-ID: 13127 |
Dynamic pathogen detection and social feedback shape collective hygiene in ants
B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).
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B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).
2023 | Published | Journal Article | IST-REx-ID: 14515 |
Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories
M. Reinhardt, G. Tkačik, P.R. Ten Wolde, Physical Review X 13 (2023).
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M. Reinhardt, G. Tkačik, P.R. Ten Wolde, Physical Review X 13 (2023).
2023 | Published | Journal Article | IST-REx-ID: 12487 |
Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture
S. Scarpetta, N. Morrisi, C. Mutti, N. Azzi, I. Trippi, R. Ciliento, I. Apicella, G. Messuti, M. Angiolelli, F. Lombardi, L. Parrino, A.E. Vaudano, IScience 26 (2023) 107840.
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S. Scarpetta, N. Morrisi, C. Mutti, N. Azzi, I. Trippi, R. Ciliento, I. Apicella, G. Messuti, M. Angiolelli, F. Lombardi, L. Parrino, A.E. Vaudano, IScience 26 (2023) 107840.
2023 | Published | Journal Article | IST-REx-ID: 12762 |
Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, Nature Computational Science 3 (2023) 254–263.
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F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, Nature Computational Science 3 (2023) 254–263.
2023 | Published | Journal Article | IST-REx-ID: 14656 |
The structure of hippocampal CA1 interactions optimizes spatial coding across experience
M. Nardin, J.L. Csicsvari, G. Tkačik, C. Savin, The Journal of Neuroscience 43 (2023) 8140–8156.
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M. Nardin, J.L. Csicsvari, G. Tkačik, C. Savin, The Journal of Neuroscience 43 (2023) 8140–8156.
2022 | Published | Journal Article | IST-REx-ID: 10530 |
Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration
T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.
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T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.