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259 Publications


2024 | Published | Journal Article | IST-REx-ID: 17232 | OA
Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols 5 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Imaging brain tissue architecture across millimeter to nanometer scales
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology 42 (2024) 1051–1064.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2024 | Published | Journal Article | IST-REx-ID: 18603 | OA
Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons
O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, P.M. Jonas, PLoS Biology 22 (2024).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2024 | Research Data | IST-REx-ID: 18296 | OA
Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons
O. Kim, (2024).
[Submitted Version] View | Files available | DOI
 

2024 | Published | Journal Article | IST-REx-ID: 14843 | OA | PlanS
Developmental transformation of Ca2+ channel-vesicle nanotopography at a central GABAergic synapse
J. Chen, W. Kaufmann, C. Chen, itaru Arai, O. Kim, R. Shigemoto, P.M. Jonas, Neuron 112 (2024) 755–771.e9.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2024 | Published | Journal Article | IST-REx-ID: 18601 | OA
Protocol for fabricating elastomeric stencils for patterned stem cell differentiation
S. Rus, J. Merrin, M.A. Kulig, T. Minchington, A. Kicheva, STAR Protocols 5 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12106 | OA
scChIX-seq infers dynamic relationships between histone modifications in single cells
J. Yeung, M. Florescu, P. Zeller, B.A. De Barbanson, M.D. Wellenstein, A. Van Oudenaarden, Nature Biotechnology 41 (2023) 813–823.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12158 | OA
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
P. Zeller, J. Yeung, H. Viñas Gaza, B.A. de Barbanson, V. Bhardwaj, M. Florescu, R. van der Linden, A. van Oudenaarden, Nature Genetics 55 (2023) 333–345.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 14041 | OA
3D cell segregation geometry and dynamics are governed by tissue surface tension regulation
E. Méhes, E. Mones, M. Varga, Á. Zsigmond, B. Biri-Kovács, L. Nyitray, V. Barone, G. Krens, C.-P.J. Heisenberg, T. Vicsek, Communications Biology 6 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 14361 | OA
Synchronization in collectively moving inanimate and living active matter
M. Riedl, I.D. Mayer, J. Merrin, M.K. Sixt, B. Hof, Nature Communications 14 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 14404
Widening the use of 3D printing
D. Balazs, M. Ibáñez, Science 381 (2023) 1413–1414.
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2023 | Published | Journal Article | IST-REx-ID: 14449 | OA
Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action
D’Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECDS, Marcos-Zambrano LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson MJ. 2023. Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. 14, 1257002.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12543 | OA
Pathogen evasion of social immunity
M. Stock, B. Milutinovic, M. Hönigsberger, A.V. Grasse, F. Wiesenhofer, N. Kampleitner, M. Narasimhan, T. Schmitt, S. Cremer, Nature Ecology and Evolution 7 (2023) 450–460.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12747 | OA
PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing
Cikes D, Elsayad K, Sezgin E, Koitai E, Ferenc T, Orthofer M, Yarwood R, Heinz LX, Sedlyarov V, Darwish-Miranda N, Taylor A, Grapentine S, al-Murshedi F, Abot A, Weidinger A, Kutchukian C, Sanchez C, Cronin SJF, Novatchkova M, Kavirayani A, Schuetz T, Haubner B, Haas L, Hagelkruys A, Jackowski S, Kozlov A, Jacquemond V, Knauf C, Superti-Furga G, Rullman E, Gustafsson T, McDermot J, Lowe M, Radak Z, Chamberlain JS, Bakovic M, Banka S, Penninger JM. 2023. PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing. Nature Metabolism. 5, 495–515.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish
K. Huljev, S. Shamipour, D.C. Nunes Pinheiro, F. Preusser, I. Steccari, C.M. Sommer, S. Naik, C.-P.J. Heisenberg, Developmental Cell 58 (2023) 582–596.e7.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 12863
Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish
V. Filipović Marijić, N. Krasnici, D. Valić, D. Kapetanović, I. Vardić Smrzlić, M. Jordanova, K. Rebok, S. Ramani, V. Kostov, R. Nastova, Z. Dragun, Environmental Science and Pollution Research 30 (2023) 63510–63521.
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2023 | Published | Journal Article | IST-REx-ID: 13033 | OA
Novel stereological method for estimation of cell counts in 3D collagen scaffolds
A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, P.R. Mouton, Scientific Reports 13 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Book Chapter | IST-REx-ID: 13052
En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses
A.F. Leithner, J. Merrin, M.K. Sixt, in:, C. Baldari, M. Dustin (Eds.), The Immune Synapse, Springer Nature, New York, NY, 2023, pp. 137–147.
View | DOI | PubMed | Europe PMC
 

2023 | Published | Conference Abstract | IST-REx-ID: 13161 | OA
Running Windows-applications on a Linux HPC cluster using WINE
A. Schlögl, S. Elefante, V.-V. Hodirnau, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, 2023, pp. 59–59.
[Submitted Version] View | Files available
 

2023 | Published | Conference Abstract | IST-REx-ID: 13162 | OA
Cryo-EM software packages: A sys-admins point of view
S. Elefante, S. Stadlbauer, M.F. Alexander, A. Schlögl, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, 2023, pp. 42–42.
[Submitted Version] View | Files available
 

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