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38 Publications

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2022 | Published | Journal Article | IST-REx-ID: 12261 |

Growth‐mediated negative feedback shapes quantitative antibiotic response
A. Angermayr, T.Y. Pang, G. Chevereau, K. Mitosch, M.J. Lercher, M.T. Bollenbach, Molecular Systems Biology 18 (2022).

[Published Version] View | Files available | DOI | WoS

2019 | Published | Journal Article | IST-REx-ID: 7026 |

Emergent gene expression responses to drug combinations predict higher-order drug interactions
M. Lukacisin, M.T. Bollenbach, Cell Systems 9 (2019) 423-433.e1-e3.

[Published Version] View | Files available | DOI | WoS

2019 | Published | Thesis | IST-REx-ID: 6392 |

Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory
M. Lukacisin, Quantitative Investigation of Gene Expression Principles through Combinatorial Drug Perturbation and Theory, IST Austria, 2019.

[Published Version] View | Files available | DOI

2018 | Published | Thesis | IST-REx-ID: 6263 |

Genetic determinants of antibiotic resistance evolution
M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, Institute of Science and Technology Austria, 2018.

[Published Version] View | Files available | DOI

2017 | Published | Journal Article | IST-REx-ID: 520

Nonhierarchical flux regulation exposes the fitness burden associated with lactate production in Synechocystis sp. PCC6803
W. Du, A. Angermayr, J. Jongbloets, D. Molenaar, H. Bachmann, K. Hellingwerf, F. Branco Dos Santos, ACS Synthetic Biology 6 (2017) 395–401.

View | DOI | PubMed | Europe PMC

2017 | Research Data | IST-REx-ID: 5563 |

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, (2017).

[Published Version] View | Files available | DOI

2017 | Research Data Reference | IST-REx-ID: 9849

Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).

[Published Version] View | Files available | DOI

2017 | Research Data Reference | IST-REx-ID: 9850

Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).

[Published Version] View | Files available | DOI

2017 | Research Data Reference | IST-REx-ID: 9851

Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).

[Published Version] View | Files available | DOI

2017 | Research Data Reference | IST-REx-ID: 9852

Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).

[Published Version] View | Files available | DOI

2017 | Published | Thesis | IST-REx-ID: 818 |

Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics
K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, Institute of Science and Technology Austria, 2017.

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2017 | Published | Journal Article | IST-REx-ID: 822 |

Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections
M. de Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC

2017 | Published | Journal Article | IST-REx-ID: 666 |

Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment
K. Mitosch, G. Rieckh, M.T. Bollenbach, Cell Systems 4 (2017) 393–403.

[Published Version] View | Files available | DOI

2017 | Published | Journal Article | IST-REx-ID: 1029 |

Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast
M. Lukacisin, M. Landon, R. Jajoo, PLoS One 12 (2017).

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 696 |

Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017).

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2017 | Published | Journal Article | IST-REx-ID: 1027 |

Toward a quantitative understanding of antibiotic resistance evolution
M. Lukacisinova, M.T. Bollenbach, Current Opinion in Biotechnology 46 (2017) 90–97.

[Published Version] View | Files available | DOI | WoS

2016 | Published | Journal Article | IST-REx-ID: 1154 |

A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients
J. Schwarz, V. Bierbaum, J. Merrin, T. Frank, R. Hauschild, M.T. Bollenbach, S. Tay, M.K. Sixt, M. Mehling, Scientific Reports 6 (2016).

[Published Version] View | Files available | DOI

2016 | Research Data | IST-REx-ID: 5556 |

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, M. Landon, R. Jajoo, (2016).

[Published Version] View | Files available | DOI

2016 | Published | Journal Article | IST-REx-ID: 1218 |

Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs
A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.

[Submitted Version] View | DOI | Download Submitted Version (ext.)

2016 | Published | Journal Article | IST-REx-ID: 1552 |

The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa
Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, R.C. Maclean, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).

[Published Version] View | Files available | DOI