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4964 Publications
2022 | Journal Article | IST-REx-ID: 15268 | 
Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior
R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A. Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269.
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R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A. Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269.
2022 | Thesis | IST-REx-ID: 11196 |
Nanoarchitecture of hippocampal mossy fiber-CA3 pyramidal neuron synapses
O. Kim, Nanoarchitecture of Hippocampal Mossy Fiber-CA3 Pyramidal Neuron Synapses, Institute of Science and Technology Austria, 2022.
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O. Kim, Nanoarchitecture of Hippocampal Mossy Fiber-CA3 Pyramidal Neuron Synapses, Institute of Science and Technology Austria, 2022.
2022 | Thesis | IST-REx-ID: 10727 |
Pathogen-mediated sexual selection and immunization in ant colonies
S. Metzler, Pathogen-Mediated Sexual Selection and Immunization in Ant Colonies, Institute of Science and Technology Austria, 2022.
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S. Metzler, Pathogen-Mediated Sexual Selection and Immunization in Ant Colonies, Institute of Science and Technology Austria, 2022.
2022 | Thesis | IST-REx-ID: 11879 |
Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature
C. Artner, Modulation of Auxin Transport via ZF Proteins Adjust Plant Response to High Ambient Temperature, Institute of Science and Technology Austria, 2022.
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C. Artner, Modulation of Auxin Transport via ZF Proteins Adjust Plant Response to High Ambient Temperature, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12138 |
A universal coupling mechanism of respiratory complex I
V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A. Sazanov, Nature 609 (2022) 808–814.
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V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A. Sazanov, Nature 609 (2022) 808–814.
2022 | Thesis | IST-REx-ID: 11393 |
Contextual fear learning induced changes in AMPA receptor subtypes along the proximodistal axis in dorsal hippocampus
M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes along the Proximodistal Axis in Dorsal Hippocampus, Institute of Science and Technology Austria, 2022.
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M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes along the Proximodistal Axis in Dorsal Hippocampus, Institute of Science and Technology Austria, 2022.
2022 | Thesis | IST-REx-ID: 12366 |
Controllable states of superconducting Qubit ensembles
E. Redchenko, Controllable States of Superconducting Qubit Ensembles, Institute of Science and Technology Austria, 2022.
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E. Redchenko, Controllable States of Superconducting Qubit Ensembles, Institute of Science and Technology Austria, 2022.
2022 | Thesis | IST-REx-ID: 11932 |
On the encoding, transfer, and consolidation of spatial memories
M. Nardin, On the Encoding, Transfer, and Consolidation of Spatial Memories, Institute of Science and Technology Austria, 2022.
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M. Nardin, On the Encoding, Transfer, and Consolidation of Spatial Memories, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12244 |
A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
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G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
2022 | Thesis | IST-REx-ID: 12378 |
MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes
G. Colombo, MorphOMICs, a Tool for Mapping Microglial Morphology, Reveals Brain Region- and Sex-Dependent Phenotypes, Institute of Science and Technology Austria, 2022.
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G. Colombo, MorphOMICs, a Tool for Mapping Microglial Morphology, Reveals Brain Region- and Sex-Dependent Phenotypes, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 10208 |
A context-aware dimension reduction framework for trajectory and health signal analyses
S. Goudarzi, M. Sharif, F. Karimipour, Journal of Ambient Intelligence and Humanized Computing 13 (2022) 2621–2635.
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S. Goudarzi, M. Sharif, F. Karimipour, Journal of Ambient Intelligence and Humanized Computing 13 (2022) 2621–2635.
2022 | Thesis | IST-REx-ID: 11388 |
The genetic basis of complex traits studied via analysis of evolve and resequence experiments
S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, Institute of Science and Technology Austria, 2022.
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S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 10703 |
WASp triggers mechanosensitive actin patches to facilitate immune cell migration in dense tissues
F. Gaertner, P. Reis-Rodrigues, I. de Vries, M. Hons, J. Aguilera, M. Riedl, A.F. Leithner, S. Tasciyan, A. Kopf, J. Merrin, V. Zheden, W. Kaufmann, R. Hauschild, M.K. Sixt, Developmental Cell 57 (2022) 47–62.e9.
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F. Gaertner, P. Reis-Rodrigues, I. de Vries, M. Hons, J. Aguilera, M. Riedl, A.F. Leithner, S. Tasciyan, A. Kopf, J. Merrin, V. Zheden, W. Kaufmann, R. Hauschild, M.K. Sixt, Developmental Cell 57 (2022) 47–62.e9.
2022 | Thesis | IST-REx-ID: 12401 |
Role of microenvironment heterogeneity in cancer cell invasion
S. Tasciyan, Role of Microenvironment Heterogeneity in Cancer Cell Invasion, Institute of Science and Technology Austria, 2022.
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S. Tasciyan, Role of Microenvironment Heterogeneity in Cancer Cell Invasion, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12080 |
Eps15/Pan1p is a master regulator of the late stages of the endocytic pathway
M. Enshoji, Y. Miyano, N. Yoshida, M. Nagano, M. Watanabe, M. Kunihiro, D.E. Siekhaus, J.Y. Toshima, J. Toshima, Journal of Cell Biology 221 (2022).
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M. Enshoji, Y. Miyano, N. Yoshida, M. Nagano, M. Watanabe, M. Kunihiro, D.E. Siekhaus, J.Y. Toshima, J. Toshima, Journal of Cell Biology 221 (2022).
2022 | Journal Article | IST-REx-ID: 10614 |
Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila
V. Belyaeva, S. Wachner, A. György, S. Emtenani, I. Gridchyn, M. Akhmanova, M. Linder, M. Roblek, M. Sibilia, D.E. Siekhaus, PLoS Biology 20 (2022) e3001494.
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V. Belyaeva, S. Wachner, A. György, S. Emtenani, I. Gridchyn, M. Akhmanova, M. Linder, M. Roblek, M. Sibilia, D.E. Siekhaus, PLoS Biology 20 (2022) e3001494.
2022 | Thesis | IST-REx-ID: 11193 |
Transcriptional regulation by Dfos and BMP-signaling support tissue invasion of Drosophila immune cells
S. Wachner, Transcriptional Regulation by Dfos and BMP-Signaling Support Tissue Invasion of Drosophila Immune Cells, Institute of Science and Technology Austria, 2022.
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S. Wachner, Transcriptional Regulation by Dfos and BMP-Signaling Support Tissue Invasion of Drosophila Immune Cells, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 11160 |
CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
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C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
2022 | Thesis | IST-REx-ID: 12364 |
Transcriptional consequences of mutations in genes associated with Autism Spectrum Disorder
C. Dotter, Transcriptional Consequences of Mutations in Genes Associated with Autism Spectrum Disorder, Institute of Science and Technology Austria, 2022.
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C. Dotter, Transcriptional Consequences of Mutations in Genes Associated with Autism Spectrum Disorder, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12248 |
ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
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M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
2022 | Research Data | IST-REx-ID: 11653 |
Data from Elkrewi, Khauratovich, Toups et al. 2022, "ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp"
M.N. Elkrewi, (2022).
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M.N. Elkrewi, (2022).
2022 | Journal Article | IST-REx-ID: 7577 |
Weak convergence for variational inequalities with inertial-type method
Y. Shehu, O.S. Iyiola, Applicable Analysis 101 (2022) 192–216.
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Y. Shehu, O.S. Iyiola, Applicable Analysis 101 (2022) 192–216.
2022 | Preprint | IST-REx-ID: 11943 |
Saturated reconstruction of living brain tissue
P. Velicky, E. Miguel Villalba, J.M. Michalska, D. Wei, Z. Lin, J. Watson, J. Troidl, J. Beyer, Y. Ben Simon, C.M. Sommer, W. Jahr, A. Cenameri, J. Broichhagen, S.G.N. Grant, P.M. Jonas, G. Novarino, H. Pfister, B. Bickel, J.G. Danzl, BioRxiv (n.d.).
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P. Velicky, E. Miguel Villalba, J.M. Michalska, D. Wei, Z. Lin, J. Watson, J. Troidl, J. Beyer, Y. Ben Simon, C.M. Sommer, W. Jahr, A. Cenameri, J. Broichhagen, S.G.N. Grant, P.M. Jonas, G. Novarino, H. Pfister, B. Bickel, J.G. Danzl, BioRxiv (n.d.).
2022 | Preprint | IST-REx-ID: 11950 |
Uncovering brain tissue architecture across scales with super-resolution light microscopy
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, A. Venturino, K. Roessler, T. Czech, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, BioRxiv (n.d.).
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J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, A. Venturino, K. Roessler, T. Czech, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, BioRxiv (n.d.).
2021 | Journal Article | IST-REx-ID: 10023 |
Trajectorial dissipation and gradient flow for the relative entropy in Markov chains
I. Karatzas, J. Maas, W. Schachermayer, Communications in Information and Systems 21 (2021) 481–536.
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I. Karatzas, J. Maas, W. Schachermayer, Communications in Information and Systems 21 (2021) 481–536.
2021 | Conference Paper | IST-REx-ID: 10052 |
Decomposing permutation automata
I.R. Jecker, N. Mazzocchi, P. Wolf, in:, 32nd International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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I.R. Jecker, N. Mazzocchi, P. Wolf, in:, 32nd International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10054 |
Faster algorithms for bounded liveness in graphs and game graphs
K. Chatterjee, M.H. Henzinger, S.S. Kale, A. Svozil, in:, 48th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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K. Chatterjee, M.H. Henzinger, S.S. Kale, A. Svozil, in:, 48th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Journal Article | IST-REx-ID: 10071 |
How to tutorial-a-thon
H. Adams, H. Kourimska, T. Heiss, S. Percival, L. Ziegelmeier, Notices of the American Mathematical Society 68 (2021) 1511–1514.
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H. Adams, H. Kourimska, T. Heiss, S. Percival, L. Ziegelmeier, Notices of the American Mathematical Society 68 (2021) 1511–1514.
2021 | Conference Paper | IST-REx-ID: 10072 |
A new notion of commutativity for the algorithmic Lovász Local Lemma
D.G. Harris, F. Iliopoulos, V. Kolmogorov, in:, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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D.G. Harris, F. Iliopoulos, V. Kolmogorov, in:, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10075 |
A bit of nondeterminism makes pushdown automata expressive and succinct
S. Guha, I.R. Jecker, K. Lehtinen, M. Zimmermann, in:, 46th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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S. Guha, I.R. Jecker, K. Lehtinen, M. Zimmermann, in:, 46th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Preprint | IST-REx-ID: 10080 |
The generalized spatial representation in the prefrontal cortex is inherited from the hippocampus
M. Nardin, K. Käfer, J.L. Csicsvari, BioRxiv (n.d.).
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M. Nardin, K. Käfer, J.L. Csicsvari, BioRxiv (n.d.).
2021 | Journal Article | IST-REx-ID: 10153 |
Transitioning from structural to nominal code with efficient gradual typing
F. Mühlböck, R. Tate, Proceedings of the ACM on Programming Languages 5 (2021).
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F. Mühlböck, R. Tate, Proceedings of the ACM on Programming Languages 5 (2021).
2021 | Conference Paper | IST-REx-ID: 10148 |
Capturing tactile properties of real surfaces for haptic reproduction
D. Degraen, M. Piovarci, B. Bickel, A. Kruger, in:, 34th Annual ACM Symposium, Association for Computing Machinery, 2021, pp. 954–971.
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D. Degraen, M. Piovarci, B. Bickel, A. Kruger, in:, 34th Annual ACM Symposium, Association for Computing Machinery, 2021, pp. 954–971.
2021 | Preprint | IST-REx-ID: 10174 |
Quantitative nonlinear homogenization: control of oscillations
N. Clozeau, A. Gloria, ArXiv (n.d.).
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N. Clozeau, A. Gloria, ArXiv (n.d.).
2021 | Journal Article | IST-REx-ID: 10180 |
Sparsity in deep learning: Pruning and growth for efficient inference and training in neural networks
T. Hoefler, D.-A. Alistarh, T. Ben-Nun, N. Dryden, E.-A. Peste, Journal of Machine Learning Research 22 (2021) 1–124.
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T. Hoefler, D.-A. Alistarh, T. Ben-Nun, N. Dryden, E.-A. Peste, Journal of Machine Learning Research 22 (2021) 1–124.
2021 | Conference Paper | IST-REx-ID: 10218 |
Brief announcement: Fast graphical population protocols
D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10217 |
Lower bounds for shared-memory leader election under bounded write contention
D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10216 |
Brief announcement: Non-blocking dynamic unbounded graphs with worst-case amortized bounds
B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10219 |
Brief announcement: Sinkless orientation is hard also in the supported LOCAL model
J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Book Chapter | IST-REx-ID: 10267
Evaluation of gravitropism in non-seed plants
Y. Zhang, L. Li, J. Friml, in:, E.B. Blancaflor (Ed.), Plant Gravitropism, Springer Nature, 2021, pp. 43–51.
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Y. Zhang, L. Li, J. Friml, in:, E.B. Blancaflor (Ed.), Plant Gravitropism, Springer Nature, 2021, pp. 43–51.
2021 | Book Chapter | IST-REx-ID: 10268
Automated time-lapse imaging and manipulation of cell divisions in Arabidopsis roots by vertical-stage confocal microscopy
L. Hörmayer, J. Friml, M. Glanc, in:, Plant Cell Division, Humana Press, 2021, pp. 105–114.
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L. Hörmayer, J. Friml, M. Glanc, in:, Plant Cell Division, Humana Press, 2021, pp. 105–114.
2021 | Journal Article | IST-REx-ID: 10285 |
On eigenvector statistics in the spherical and truncated unitary ensembles
G. Dubach, Electronic Journal of Probability 26 (2021).
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G. Dubach, Electronic Journal of Probability 26 (2021).
2021 | Conference Paper | IST-REx-ID: 10367 |
Recognizing multimodal entailment
C. Ilharco, A. Shirazi, A. Gopalan, A. Nagrani, B. Bratanič, C. Bregler, C. Liu, F. Ferreira, G. Barcik, G. Ilharco, G.F. Osang, J. Bulian, J. Frank, L. Smaira, Q. Cao, R. Marino, R. Patel, T. Leung, V. Imbrasaite, in:, 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, Tutorial Abstracts, Association for Computational Linguistics, 2021, pp. 29–30.
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C. Ilharco, A. Shirazi, A. Gopalan, A. Nagrani, B. Bratanič, C. Bregler, C. Liu, F. Ferreira, G. Barcik, G. Ilharco, G.F. Osang, J. Bulian, J. Frank, L. Smaira, Q. Cao, R. Marino, R. Patel, T. Leung, V. Imbrasaite, in:, 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, Tutorial Abstracts, Association for Computational Linguistics, 2021, pp. 29–30.
2021 | Book | IST-REx-ID: 10415
Cubic Forms and the Circle Method
T.D. Browning, Cubic Forms and the Circle Method, Springer Nature, Cham, 2021.
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T.D. Browning, Cubic Forms and the Circle Method, Springer Nature, Cham, 2021.
2021 | Journal Article | IST-REx-ID: 10535 |
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
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K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
2021 | Conference Paper | IST-REx-ID: 10552 |
One-sided Frank-Wolfe algorithms for saddle problems
V. Kolmogorov, T. Pock, in:, 38th International Conference on Machine Learning, 2021.
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| arXiv
V. Kolmogorov, T. Pock, in:, 38th International Conference on Machine Learning, 2021.
2021 | Conference Paper | IST-REx-ID: 10595 |
Tight bounds on the smallest eigenvalue of the neural tangent kernel for deep ReLU networks
Q. Nguyen, M. Mondelli, G.F. Montufar, in:, M. Meila, T. Zhang (Eds.), Proceedings of the 38th International Conference on Machine Learning, ML Research Press, 2021, pp. 8119–8129.
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Q. Nguyen, M. Mondelli, G.F. Montufar, in:, M. Meila, T. Zhang (Eds.), Proceedings of the 38th International Conference on Machine Learning, ML Research Press, 2021, pp. 8119–8129.
2021 | Conference Paper | IST-REx-ID: 10599 |
Successive syndrome-check decoding of polar codes
S.A. Hashemi, M. Mondelli, J. Cioffi, A. Goldsmith, in:, Proceedings of the 55th Asilomar Conference on Signals, Systems, and Computers, Institute of Electrical and Electronics Engineers, 2021, pp. 943–947.
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S.A. Hashemi, M. Mondelli, J. Cioffi, A. Goldsmith, in:, Proceedings of the 55th Asilomar Conference on Signals, Systems, and Computers, Institute of Electrical and Electronics Engineers, 2021, pp. 943–947.
2021 | Journal Article | IST-REx-ID: 10608 |
Coarse infinite-dimensionality of hyperspaces of finite subsets
T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics (2021).
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T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics (2021).
2021 | Journal Article | IST-REx-ID: 10613 |
Higher-order hydrodynamics and equilibrium fluctuations of interacting particle systems
J.P. Chen, F. Sau, Markov Processes And Related Fields 27 (2021) 339–380.
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J.P. Chen, F. Sau, Markov Processes And Related Fields 27 (2021) 339–380.