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376 Publications


2024 | Thesis | IST-REx-ID: 15020 | OA
Genetic information and biological optimization
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.
[Published Version] View | Files available | DOI
 

2024 | Journal Article | IST-REx-ID: 15119 | OA
Stochastic maximal Lp(Lq)-regularity for second order systems with periodic boundary conditions
A. Agresti, M. Veraar, Annales de l’institut Henri Poincare Probability and Statistics 60 (2024) 413–430.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2024 | Journal Article | IST-REx-ID: 15169
kCSD-python, reliable current source density estimation with quality control
C. Chintaluri, M. Bejtka, W. Sredniawa, M. Czerwinski, J.M. Dzik, J. Jedrzejewska-Szmek, D.K. Wojciki, PLoS Computational Biology 20 (2024).
[Published Version] View | Files available | DOI
 

2024 | Journal Article | IST-REx-ID: 15146 | OA
Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix
B. Zens, F. Fäßler, J. Hansen, R. Hauschild, J. Datler, V.-V. Hodirnau, V. Zheden, J.H. Alanko, M.K. Sixt, F.K. Schur, Journal of Cell Biology 223 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15315 | OA
Learning dynamical models of single and collective cell migration: a review
D. Brückner, C.P. Broedersz, Reports on Progress in Physics 87 (2024).
[Published Version] View | DOI | Download Published Version (ext.)
 

2023 | Journal Article | IST-REx-ID: 12469 | OA
Antiviral immune response reveals host-specific virus infections in natural ant populations
L. Viljakainen, M. Fürst, A.V. Grasse, J. Jurvansuu, J. Oh, L. Tolonen, T. Eder, T. Rattei, S. Cremer, Frontiers in Microbiology 14 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12567 | OA
Single-molecule localization microscopy of presynaptic active zones in Drosophila melanogaster after rapid cryofixation
A. Mrestani, K. Lichter, A.L. Sirén, M. Heckmann, M.M. Paul, M. Pauli, International Journal of Molecular Sciences 24 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12704 | OA
Revisiting the adversarial robustness-accuracy tradeoff in robot learning
M. Lechner, A. Amini, D. Rus, T.A. Henzinger, IEEE Robotics and Automation Letters 8 (2023) 1595–1602.
[Published Version] View | Files available | DOI | WoS | arXiv
 

2023 | Journal Article | IST-REx-ID: 12759 | OA
Validation of a stereological method for estimating particle size and density from 2D projections with high accuracy
J.S. Rothman, C. Borges Merjane, N. Holderith, P.M. Jonas, R. Angus Silver, PLoS ONE 18 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12758 | OA
Using AlphaFold to predict the impact of single mutations on protein stability and function
M.A. Pak, K.A. Markhieva, M.S. Novikova, D.S. Petrov, I.S. Vorobyev, E. Maksimova, F. Kondrashov, D.N. Ivankov, PLoS ONE 18 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12818 | OA
Curvature induces active velocity waves in rotating spherical tissues
T. Brandstätter, D. Brückner, Y.L. Han, R. Alert, M. Guo, C.P. Broedersz, Nature Communications 14 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12876 | OA
Boolean network sketches: A unifying framework for logical model inference
N. Beneš, L. Brim, O. Huvar, S. Pastva, D. Šafránek, Bioinformatics 39 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 13033 | OA
Novel stereological method for estimation of cell counts in 3D collagen scaffolds
A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, P.R. Mouton, Scientific Reports 13 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12159 | OA
On the origin and structure of haplotype blocks
D. Shipilina, A. Pal, S. Stankowski, Y.F. Chan, N.H. Barton, Molecular Ecology 32 (2023) 1441–1457.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12544 | OA
Computing the volume, surface area, mean, and Gaussian curvatures of molecules and their derivatives
P. Koehl, A. Akopyan, H. Edelsbrunner, Journal of Chemical Information and Modeling 63 (2023) 973–985.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12762 | OA
Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, Nature Computational Science 3 (2023) 254–263.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Conference Paper | IST-REx-ID: 14241 | OA
Stealth shaper: Reflectivity optimization as surface stylization
K. Tojo, A. Shamir, B. Bickel, N. Umetani, in:, SIGGRAPH 2023 Conference Proceedings, Association for Computing Machinery, 2023.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Paper | IST-REx-ID: 13310 | OA
Monitoring algorithmic fairness
T.A. Henzinger, M. Karimi, K. Kueffner, K. Mallik, in:, Computer Aided Verification, Springer Nature, 2023, pp. 358–382.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Conference Paper | IST-REx-ID: 14105 | OA
TeST: Test-time Self-Training under distribution shift
S. Sinha, P. Gehler, F. Locatello, B. Schiele, in:, 2023 IEEE/CVF Winter Conference on Applications of Computer Vision, Institute of Electrical and Electronics Engineers, 2023.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Paper | IST-REx-ID: 14211 | OA
Causal discovery with score matching on additive models with arbitrary noise
F. Montagna, N. Noceti, L. Rosasco, K. Zhang, F. Locatello, in:, 2nd Conference on Causal Learning and Reasoning, 2023.
[Preprint] View | Download Preprint (ext.) | arXiv
 

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