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7238 Publications
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 18778 |

Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, B.M. Kaczmarek, A.P. Testa Salmazo, C. Bernecky, Nature Structural & Molecular Biology (2025).
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K. Tluckova, B.M. Kaczmarek, A.P. Testa Salmazo, C. Bernecky, Nature Structural & Molecular Biology (2025).
2025 | Published | Journal Article | IST-REx-ID: 18529
Limitation of time promotes cooperation in structured collaboration systems
Y. Zhang, J. Wang, G. Wen, J. Guan, S. Zhou, G. Chen, K. Chatterjee, M. Perc, IEEE Transactions on Network Science and Engineering 12 (2025) 4–12.
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Y. Zhang, J. Wang, G. Wen, J. Guan, S. Zhou, G. Chen, K. Chatterjee, M. Perc, IEEE Transactions on Network Science and Engineering 12 (2025) 4–12.
2025 | Published | Journal Article | IST-REx-ID: 18850 |

Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
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M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
2025 | Published | Journal Article | IST-REx-ID: 18855 |

Parameter estimation for Gibbs distributions
D.G. Harris, V. Kolmogorov, ACM Transactions on Algorithms 21 (2025).
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D.G. Harris, V. Kolmogorov, ACM Transactions on Algorithms 21 (2025).
2025 | Published | Journal Article | IST-REx-ID: 18821 |

Comparison of renormalized interactions using one-dimensional few-body systems as a testbed
F. Brauneis, H.W. Hammer, S.M. Reimann, A. Volosniev, Physical Review A 111 (2025).
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F. Brauneis, H.W. Hammer, S.M. Reimann, A. Volosniev, Physical Review A 111 (2025).
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 18853
Modulating the solvation structure to enhance amorphous solid electrolyte interface formation for ultra-stable aqueous zinc anode
G. Zeng, Q. Sun, S. Horta, P.R. Martínez-Alanis, P. Wu, J. Li, S. Wang, M. Ibáñez, Y. Tian, L. Ci, A. Cabot, Energy and Environmental Science (2025).
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G. Zeng, Q. Sun, S. Horta, P.R. Martínez-Alanis, P. Wu, J. Li, S. Wang, M. Ibáñez, Y. Tian, L. Ci, A. Cabot, Energy and Environmental Science (2025).
2025 | Published | Journal Article | IST-REx-ID: 18879 |

Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory
J. Watson, V.M. Vargas Barroso, R. Morse, A.C. Navas Olivé, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, Cell 188 (2025) 501–514.e18.
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J. Watson, V.M. Vargas Barroso, R. Morse, A.C. Navas Olivé, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, Cell 188 (2025) 501–514.e18.
2025 | Published | Journal Article | IST-REx-ID: 18849 |

Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
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T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 18882
Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance
X. Zhao, M. Li, M. Jia, C. Fiedler, B. Nan, D. Yang, L. Li, Z. Yuan, H. Song, Y. Liu, M. Ibáñez, Z. Wang, C. Shan, A. Cabot, Advanced Functional Materials (2025).
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X. Zhao, M. Li, M. Jia, C. Fiedler, B. Nan, D. Yang, L. Li, Z. Yuan, H. Song, Y. Liu, M. Ibáñez, Z. Wang, C. Shan, A. Cabot, Advanced Functional Materials (2025).
2025 | Research Data | IST-REx-ID: 18697 |

Light-microscopy based connectomic reconstruction of mammalian brain tissue
J.G. Danzl, J. Lyudchik, C. Kreuzinger, (2025).
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J.G. Danzl, J. Lyudchik, C. Kreuzinger, (2025).
2025 | Published | Journal Article | IST-REx-ID: 19278 |

Spontaneous ordering of identical materials into a triboelectric series
J.C.A. Sobarzo Ponce, F. Pertl, D. Balazs, T. Costanzo, M. Sauer, A. Foelske, M. Ostermann, C.M. Pichler, Y. Wang, Y. Nagata, M. Bonn, S.R. Waitukaitis, Nature 638 (2025).
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J.C.A. Sobarzo Ponce, F. Pertl, D. Balazs, T. Costanzo, M. Sauer, A. Foelske, M. Ostermann, C.M. Pichler, Y. Wang, Y. Nagata, M. Bonn, S.R. Waitukaitis, Nature 638 (2025).
2025 | Published | Journal Article | IST-REx-ID: 19280 |

Observation of collapse and revival in a superconducting atomic frequency comb
E. Redchenko, M. Zens, M. Zemlicka, M. Peruzzo, F. Hassani, R. Sett, P.D. Zielinski, H.S. Dhar, D.O. Krimer, S. Rotter, J.M. Fink, Physical Review Letters 134 (2025).
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E. Redchenko, M. Zens, M. Zemlicka, M. Peruzzo, F. Hassani, R. Sett, P.D. Zielinski, H.S. Dhar, D.O. Krimer, S. Rotter, J.M. Fink, Physical Review Letters 134 (2025).
2025 | Published | Journal Article | IST-REx-ID: 19276 |

Environment-limited transfer of angular momentum in Bose liquids
A. Cappellaro, G. Bighin, I. Cherepanov, M. Lemeshko, Journal of Chemical Physics 162 (2025).
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A. Cappellaro, G. Bighin, I. Cherepanov, M. Lemeshko, Journal of Chemical Physics 162 (2025).
2025 | Research Data | IST-REx-ID: 19294 |

Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
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K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
2024 | Published | Journal Article | IST-REx-ID: 18604 |

Removing popular faces in curve arrangements
P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.
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P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.
2024 | Published | Journal Article | IST-REx-ID: 18596 |

A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis
M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.
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M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.
2024 | Published | Journal Article | IST-REx-ID: 18602 |

Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states
F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).
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F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).
2024 | Epub ahead of print | Conference Paper | IST-REx-ID: 18600 |

Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report
Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.
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Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.
2024 | Published | Conference Paper | IST-REx-ID: 18599
Monitoring extended hypernode logic
M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171.
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M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171.
2024 | Published | Thesis | IST-REx-ID: 18515 |

Effect of population structure on neutral genetic variation and barriers to gene exchange
P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.
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P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.