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192 Publications


2007 | Journal Article | IST-REx-ID: 3022
Clathrin-mediated constitutive endocytosis of PIN auxin efflux carriers in Arabidopsis
P. Dhonukshe, F. Aniento, I. Hwang, D. Robinson, J. Mravec, Y. Stierhof, J. Friml, Current Biology 17 (2007) 520–527.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 3027
MODULATOR of PIN genes control steady state levels of Arabidopsis PIN proteins
N. Malenica, L. Abas, R. Benjamins, S. Kitakura, H. Sigmund, K. Jun, M. Hauser, J. Friml, C. Luschnig, Plant Journal 51 (2007) 537–550.
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2007 | Journal Article | IST-REx-ID: 3144
ETS transcription factor Erm controls subsynaptic gene expression in skeletal muscles
S. Hippenmeyer, R. Huber, D. Ladle, K. Murphy, S. Arber, Neuron 55 (2007) 726–740.
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2007 | Conference Paper | IST-REx-ID: 3223
Improving the security of MACs via randomized message preprocessing
Y. Dodis, K.Z. Pietrzak, in:, Springer, 2007, pp. 414–433.
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2007 | Conference Paper | IST-REx-ID: 3222
Parallel repetition of computationally sound protocols revisited
K.Z. Pietrzak, D. Wikström, in:, Springer, 2007, pp. 86–102.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3220
Intrusion resilient secret sharing
S. Dziembowski, K.Z. Pietrzak, in:, IEEE, 2007, pp. 227–237.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3219
Indistinguishability amplification
U. Maurer, K.Z. Pietrzak, R. Renner, in:, Springer, 2007, pp. 130–149.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3221
Range extension for weak PRFs the good the bad and the ugly
K.Z. Pietrzak, J. Sjödin, in:, Springer, 2007, pp. 517–533.
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2007 | Journal Article | IST-REx-ID: 3436
Behavioral paternity predicts genetic paternity in satin bowerbirds, a species with a non-resource-based mating system
S. Reynolds, K. Dryer, J.P. Bollback, J.A. Uy, G. Patricelli, T. Robson, G. Borgia, M. Braun, The Auk 124 (2007) 857–867.
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2007 | Book Chapter | IST-REx-ID: 3432
Estimating the history of mutations on a phylogeny
J.P. Bollback, P. Gardner, R. Nielsen, in:, D. Liberles (Ed.), Ancestral Sequence Reconstruction, Oxford University Press, 2007, pp. 69–79.
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2007 | Journal Article | IST-REx-ID: 3450
Neural inhibition
P.M. Jonas, G. Buzsáki, Scholarpedia 2 (2007).
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3561 | OA
Weak witnesses for Delaunay triangulations of submanifolds
D. Attali, H. Edelsbrunner, Y. Mileyko, in:, ACM, 2007, pp. 143–150.
View | DOI | Download (ext.)
 

2007 | Conference Paper | IST-REx-ID: 3681
Optimal dominant motion estimation using adaptive search of transformation space
A. Ulges, C. Lampert, D. Keysers, T. Breuel, in:, Springer, 2007, pp. 204–213.
View | DOI
 

2007 | Book | IST-REx-ID: 3674
Evolution
N.H. Barton, D. Briggs, J. Eisen, D. Goldstein, N. Patel, Evolution, Cold Spring Harbor Laboratory Press, 2007.
View | Files available
 

2007 | Journal Article | IST-REx-ID: 3727
Digital force-feedback for protein unfolding experiments using atomic force microscopy
C. Bippes, H.L. Janovjak, A. Kedrov, D. Mueller, Nanotechnology 18 (2007).
View | DOI
 

2007 | Journal Article | IST-REx-ID: 3723
Transmembrane helices have rough energy surfaces
H.L. Janovjak, H. Knaus, D. Mueller, Journal of the American Chemical Society 129 (2007) 246–247.
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2007 | Preprint | IST-REx-ID: 3742 | OA
Faster solutions of the inverse pairwise Ising problem
T. Broderick, M. Dudik, G. Tkačik, R. Schapire, W. Bialek, ArXiv q-QM (2007).
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2007 | Journal Article | IST-REx-ID: 3821
Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells
C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Journal of Neuroscience 27 (2007) 8430–8441.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 3820
Structural determinants of transmission at large hippocampal mossy fiber synapses
A. Rollenhagen, K. Satzler, E.P. Rodriguez, P.M. Jonas, M. Frotscher, J. Lubke, Journal of Neuroscience 27 (2007) 10434–44.
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2007 | Journal Article | IST-REx-ID: 3819
Differential gating and recruitment of P/Q-, N-, and R-type Ca(2+) channels in hippocampal mossy fiber boutons
L. Li, J. Bischofberger, P.M. Jonas, Journal of Neuroscience 27 (2007) 13420–9.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3883
Generalized parity games
K. Chatterjee, T.A. Henzinger, N. Piterman, in:, Springer, 2007, pp. 153–167.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 3882
Concurrent games with tail objectives
K. Chatterjee, Theoretical Computer Science 388 (2007) 181–198.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3884
Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2007, pp. 59–73.
View | Files available | DOI
 

2007 | Conference Paper | IST-REx-ID: 3881
Qualitative logics and equivalences for probabilistic systems
L. De Alfaro, K. Chatterjee, M. Faella, A. Legay, in:, IEEE, 2007, pp. 237–248.
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2007 | Conference Paper | IST-REx-ID: 3887
Markov decision processes with multiple long-run average objectives
K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2007, pp. 473–484.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3886
Stochastic Müller games are PSPACE-complete
K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2007, pp. 436–448.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 3885
Optimal strategy synthesis in stochastic Müller games
K. Chatterjee, in:, Springer, 2007, pp. 138–152.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 3938
RhoH is important for positive thymocyte selection and T-cell receptor signaling
T. Dorn, U. Kuhn, G. Bungartz, S. Stiller, M. Bauer, J. Ellwart, T. Peters, K. Scharffetter Kochanek, M. Semmrich, M. Laschinger, B. Holzmann, W. Klinkert, P. Straten, T. Køllgaard, M.K. Sixt, C. Brakebusch, Blood 109 (2007) 2346–2355.
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2007 | Journal Article | IST-REx-ID: 3937
Lymph node chemokines promote sustained T lymphocyte motility without triggering stable integrin adhesiveness in the absence of shear forces
E. Woolf, I. Grigorova, A. Sagiv, V. Grabovsky, S. Feigelson, Z. Shulman, T. Hartmann, M.K. Sixt, J. Cyster, R. Alon, Nature Immunology 8 (2007) 1076–1085.
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2007 | Journal Article | IST-REx-ID: 3973
Inequalities for the curvature of curves and surfaces
D. Cohen Steiner, H. Edelsbrunner, Foundations of Computational Mathematics 7 (2007) 391–404.
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2007 | Journal Article | IST-REx-ID: 3972
Stability of persistence diagrams
D. Cohen Steiner, H. Edelsbrunner, J. Harer, Discrete & Computational Geometry 37 (2007) 103–120.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4205
The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion
S. Von Der Hardt, J. Bakkers, A. Inbal, L. Carvalho, L. Solnica Krezel, C.-P.J. Heisenberg, M. Hammerschmidt, Current Biology 17 (2007) 475–487.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4234 | OA [Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2007 | Conference Paper | IST-REx-ID: 4233
Alternativas prebióticas para la síntesis de amino- ácidos y otras moléculas relacionadas
H. de Vladar, in:, N. Falcón, Y. Loyo De Sardi (Eds.), Consejo de Desarrollo Cientifico y Tecnologico, 2007, pp. 91–109.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4247
The relation between multilocus population genetics and social evolution theory
A. Gardner, S. West, N.H. Barton, American Naturalist 169 (2007) 207–226.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4246
Do evolution and ecology need the Gaia hypothesis?
A. Free, N.H. Barton, Trends in Ecology and Evolution 22 (2007) 611–619.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4399
Algorithms for interface synthesis
D. Beyer, T.A. Henzinger, V. Singh, in:, Springer, 2007, pp. 4–19.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4394
Using First-Order Theorem Provers in the Jahob Data Structure Verification System
C. Bouillaguet, V. Kuncak, T. Wies, K. Zee, M. Rinard, in:, Springer, 2007, pp. 74–88.
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2007 | Conference Paper | IST-REx-ID: 4398
Shape Analysis for Composite Data Structures
J. Berdine, C. Calcagno, B. Cook, D. Distefano, P. O’Hearn, T. Wies, H. Yang, in:, Springer, 2007, pp. 178–192.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4405
Qualitative networks: A symbolic approach to analyze biological signaling networks
M. Schaub, T.A. Henzinger, J. Fisher, BMC Systems Biology 1 (2007).
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2007 | Conference Paper | IST-REx-ID: 4402
Model Checking on Trees with Path Equivalences
R. Alur, P. Cerny, S. Chaudhuri, in:, Springer, 2007, pp. 664–678.
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2007 | Book Chapter | IST-REx-ID: 4417
Abstract counterexample-based refinement for powerset domains
R. Manevich, J. Field, T.A. Henzinger, G. Ramalingam, M. Sagiv, in:, Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, Springer, 2007, pp. 273–292.
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2007 | Journal Article | IST-REx-ID: 4446
The embedded machine: Predictable, portable real-time code
T.A. Henzinger, C. Kirsch, ACM Transactions on Programming Languages and Systems (TOPLAS) 29 (2007).
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2007 | Conference Paper | IST-REx-ID: 4514
Games, time, and probability: Graph models for system design and analysis
T.A. Henzinger, in:, Springer, 2007, pp. 103–110.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4511
Quantitative generalizations of languages
T.A. Henzinger, in:, Springer, 2007, pp. 20–22.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4531
Predictive modeling of signaling crosstalk during C. elegans vulval development
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4529
Executable cell biology
J. Fisher, T.A. Henzinger, Nature Biotechnology 25 (2007) 1239–1249.
View | DOI
 

2007 | Conference (Editor) | IST-REx-ID: 4530
CSL: Computer Science Logic
J. Duparc, T.A. Henzinger, CSL: Computer Science Logic , Springer, 2007.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4537
Assume-guarantee synthesis
K. Chatterjee, T.A. Henzinger, in:, Springer, 2007, pp. 261–275.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4547
Algorithms for omega-regular games with imperfect information
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, Logical Methods in Computer Science 3 (2007) 1–23.
View | DOI
 

2007 | Thesis | IST-REx-ID: 4559
Stochastic ω-Regular Games
K. Chatterjee, Stochastic ω-Regular Games, University of California, Berkeley, 2007.
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2007 | Thesis | IST-REx-ID: 4566
A framework for compositional design and analysis of systems
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
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2007 | Journal Article | IST-REx-ID: 4567
The software model checker BLAST: Applications to software engineering
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4570
Minimum-time reachability in timed games
T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4573
Configurable software verification: Concretizing the convergence of model checking and program analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4572
Invariant synthesis for combined theories
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4571
Path invariants
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 4575
An application of web-service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, S. Seshia, in:, IEEE, 2007, pp. 831–838.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 4626
Concurrent reachability games
L. De Alfaro, T.A. Henzinger, O. Kupferman, Theoretical Computer Science 386 (2007) 188–217.
View | DOI
 

2007 | Conference Paper | IST-REx-ID: 582 View | DOI
 

2007 | Journal Article | IST-REx-ID: 6150
Glypican LON-2 is a conserved negative regulator of BMP-like signaling in Caenorhabditis elegans
T.L. Gumienny, L.T. MacNeil, H. Wang, M. de Bono, J.L. Wrana, R.W. Padgett, Current Biology 17 (2007) 159–164.
View | DOI | PubMed | Europe PMC
 

2007 | Book Chapter | IST-REx-ID: 6323 | OA
An overview of Manin's conjecture for del Pezzo surfaces
T.D. Browning, in:, A Tribute to Gauss and Dirichlet, American Mathematical Society, 2007, pp. 39–56.
[Preprint] View | Download Preprint (ext.) | arXiv
 

2007 | Preprint | IST-REx-ID: 6321 | OA
The Manin conjecture in dimension 2
T.D. Browning, ArXiv (n.d.).
[Preprint] View | Download Preprint (ext.) | arXiv
 

2007 | Journal Article | IST-REx-ID: 7325
Oscillations in gas channels: Part I. The forgotten player in impedance spectroscopy in PEFCs
I.A. Schneider, S.A. Freunberger, D. Kramer, A. Wokaun, G.G. Scherer, Journal of The Electrochemical Society 154 (2007).
View | DOI
 

2007 | Journal Article | IST-REx-ID: 7323
Consumption and efficiency of a passenger car with a Hydrogen/Oxygen PEFC based hybrid electric drivetrain
F.N. Büchi, G. Paganelli, P. Dietrich, D. Laurent, A. Tsukada, P. Varenne, A. Delfino, R. Kötz, S.A. Freunberger, P.-A. Magne, D. Walser, D. Olsommer, Fuel Cells 7 (2007) 329–335.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 7324
On the efficiency of an advanced automotive fuel cell system
F.N. Büchi, S.A. Freunberger, M. Reum, G. Paganelli, A. Tsukada, P. Dietrich, A. Delfino, Fuel Cells 7 (2007) 159–164.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 7753 | OA [Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 7781
Live fast, die young: Trade-offs between fitness components and sexually antagonistic selection on weaponry in soay sheep
M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B. Kruuk, Evolution 60 (2007) 2168–2181.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 7780
Single-molecule electrophoresis of β-hairpin peptides by electrical recordings and Langevin dynamics simulations
C.P. Goodrich, S. Kirmizialtin, B.M. Huyghues-Despointes, A. Zhu, J.M. Scholtz, D.E. Makarov, L. Movileanu, The Journal of Physical Chemistry B 111 (2007) 3332–3335.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 8027
Gating deficits in model networks: A path to schizophrenia?
T.P. Vogels, L. Abbott, Pharmacopsychiatry 40 (2007) S73–S77.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 8483
Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy
P. Schanda, V. Forge, B. Brutscher, Proceedings of the National Academy of Sciences 104 (2007) 11257–11262.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 8487
UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates
M. Gal, P. Schanda, B. Brutscher, L. Frydman, Journal of the American Chemical Society 129 (2007) 1372–1377.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 8485
Sensitivity-optimized experiment for the measurement of residual dipolar couplings between amide protons
P. Schanda, E. Lescop, M. Falge, R. Sounier, J. Boisbouvier, B. Brutscher, Journal of Biomolecular NMR 38 (2007) 47–55.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 8486
Automated spectral compression for fast multidimensional NMR and increased time resolution in real-time NMR spectroscopy
E. Lescop, P. Schanda, R. Rasia, B. Brutscher, Journal of the American Chemical Society 129 (2007) 2756–2757.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 8484
A set of BEST triple-resonance experiments for time-optimized protein resonance assignment
E. Lescop, P. Schanda, B. Brutscher, Journal of Magnetic Resonance 187 (2007) 163–169.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 860
Conversion and compensatory evolution of the γ-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state
O. Plotnikova, F. Kondrashov, P. Vlasov, A. Grigorenko, E. Ginter, E. Rogaev, American Journal of Human Genetics 81 (2007) 32–43.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 879
Selection for functional uniformity of tuf duplicates in γ-proteobacteria
F. Kondrashov, T. Gurbich, P. Vlasov, Trends in Genetics 23 (2007) 215–218.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 904
Extensive parallelism in protein evolution
G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov, I. Dubchak, A. Kondrashov, Biology Direct 2 (2007).
View | DOI
 

2007 | Journal Article | IST-REx-ID: 9487 | OA
DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 8511 View | DOI
 

2007 | Journal Article | IST-REx-ID: 8512 View | DOI
 

2007 | Journal Article | IST-REx-ID: 861
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
K. Popadin, L. Mamirova, F. Kondrashov, BMC Bioinformatics 8 (2007).
View | DOI
 

2007 | Journal Article | IST-REx-ID: 9149 | OA
Instability and focusing of internal tides in the deep ocean
O. Bühler, C.J. Muller, Journal of Fluid Mechanics 588 (2007) 1–28.
View | DOI | Download None (ext.)
 

2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 9524 | OA
Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 13424
Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres
R. Klajn, A.O. Pinchuk, G.C. Schatz, B.A. Grzybowski, Angewandte Chemie International Edition 46 (2007) 8363–8367.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 13425 | OA
Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures
R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy of Sciences 104 (2007) 10305–10309.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 13427
Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates
R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P. Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 13426
Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin
M. Paszewski, S.K. Smoukov, R. Klajn, B.A. Grzybowski, Langmuir 23 (2007) 5419–5422.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 7705
Temporal target restriction of olfactory receptor neurons by semaphorin-1a/plexinA-mediated axon-axon interactions
L.B. Sweeney, A. Couto, Y.-H. Chou, D. Berdnik, B.J. Dickson, L. Luo, T. Komiyama, Neuron 53 (2007) 185–200.
View | DOI
 

2007 | Journal Article | IST-REx-ID: 7704
Graded expression of semaphorin-1a cell-autonomously directs dendritic targeting of olfactory projection neurons
T. Komiyama, L.B. Sweeney, O. Schuldiner, K.C. Garcia, L. Luo, Cell 128 (2007) 399–410.
View | DOI
 

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