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309 Publications


2011 | Journal Article | IST-REx-ID: 3097
P. Marhavý et al., “Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis,” Developmental Cell, vol. 21, no. 4. Cell Press, pp. 796–804, 2011.
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2011 | Journal Article | IST-REx-ID: 3096
K. T. Wabnik, J. Kleine Vehn, W. Govaerts, and J. Friml, “Prototype cell-to-cell auxin transport mechanism by intracellular auxin compartmentalization,” Trends in Plant Science, vol. 16, no. 9. Cell Press, pp. 468–475, 2011.
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2011 | Journal Article | IST-REx-ID: 3138
D. Sullivan, J. L. Csicsvari, K. Mizuseki, S. Montgomery, K. Diba, and G. Buzsáki, “Relationships between hippocampal sharp waves ripples and fast gamma oscillation Influence of dentate and entorhinal cortical activity,” Journal of Neuroscience, vol. 31, no. 23. Society for Neuroscience, pp. 8605–8616, 2011.
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2011 | Journal Article | IST-REx-ID: 3145
B. Tasic et al., “Site specific integrase mediated transgenesis in mice via pronuclear injection,” PNAS, vol. 108, no. 19. National Academy of Sciences, pp. 7902–7907, 2011.
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2011 | Journal Article | IST-REx-ID: 3154
M. Degennaro, T. Hurd, D. E. Siekhaus, B. Biteau, H. Jasper, and R. Lehmann, “Peroxiredoxin stabilization of DE-cadherin promotes primordial germ cell adhesion,” Developmental Cell, vol. 20, no. 2. Cell Press, pp. 233–243, 2011.
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2011 | Conference Paper | IST-REx-ID: 3239
S. Faust, K. Z. Pietrzak, and D. Venturi, “Tamper proof circuits How to trade leakage for tamper resilience,” presented at the ICALP: Automata, Languages and Programming, 2011, vol. 6755, no. Part 1, pp. 391–402.
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2011 | Conference Paper | IST-REx-ID: 3236
A. Jain and K. Z. Pietrzak, “Parallel repetition for leakage resilience amplification revisited,” presented at the TCC: Theory of Cryptography Conference, 2011, vol. 6597, pp. 58–69.
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2011 | Journal Article | IST-REx-ID: 3276 | OA
J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, and P. Nelson, “Fast, scalable, Bayesian spike identification for multi-electrode arrays,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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2011 | Book Chapter | IST-REx-ID: 3271
H. Wagner, C. Chen, and E. Vuçini, “Efficient computation of persistent homology for cubical data,” in Topological Methods in Data Analysis and Visualization II, R. Peikert, H. Hauser, H. Carr, and R. Fuchs, Eds. Springer, 2011, pp. 91–106.
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2011 | Journal Article | IST-REx-ID: 3278
R. Vila, N. Pierce, D. Nash, and L. V. Ugelvig, “A phylogenetic revision of the Glaucopsyche section (Lepidoptera: Lycaenidae), with special focus on the Phengaris-Maculinea clade,” Molecular Phylogenetics and Evolution, vol. 61, no. 1. Elsevier, pp. 237–243, 2011.
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2011 | Conference Paper | IST-REx-ID: 3270
C. Chen and M. Kerber, “Persistent homology computation with a twist,” presented at the EuroCG: European Workshop on Computational Geometry, Morschach, Switzerland, 2011, pp. 197–200.
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2011 | Conference Paper | IST-REx-ID: 3298 | OA
K. Raveendran, C. Wojtan, and G. Turk, “Hybrid smoothed particle hydrodynamics,” presented at the SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, Vancouver, Canada, 2011, pp. 33–42.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3297 | OA
C. Wojtan, M. Müller Fischer, and T. Brochu, “Liquid simulation with mesh-based surface tracking,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Vancouver, BC, Canada, 2011.
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3290 | OA
K. Lohse, R. Harrison, and N. H. Barton, “A general method for calculating likelihoods under the coalescent process,” Genetics, vol. 189, no. 3. Genetics Society of America, pp. 977–987, 2011.
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2011 | Conference Poster | IST-REx-ID: 3312 | OA
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, and P. Benfey, Detailed reconstruction of 3D plant root shape. IEEE, 2011.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3313 | OA
C. Chen and H. Edelsbrunner, “Diffusion runs low on persistence fast,” in Proceedings of the IEEE International Conference on Computer Vision, Barcelona, Spain, 2011.
[Submitted Version] View | Files available | DOI
 

2011 | Book Chapter | IST-REx-ID: 3311 | OA
H. Edelsbrunner, “Alpha shapes - a survey,” in Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, R. van de Weygaert, G. Vegter, J. Ritzerveld, and V. Icke, Eds. Springer.
[Submitted Version] View | Files available
 

2011 | Conference Paper | IST-REx-ID: 3326 | OA
S. Almagor, U. Boker, and O. Kupferman, “What’s decidable about weighted automata ,” presented at the ATVA: Automated Technology for Verification and Analysis, Taipei, Taiwan, 2011, vol. 6996, pp. 482–491.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3325
R. Alur and P. Cerny, “Streaming transducers for algorithmic verification of single pass list processing programs,” presented at the POPL: Principles of Programming Languages, Texas, USA, 2011, vol. 46, no. 1, pp. 599–610.
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2011 | Conference Paper | IST-REx-ID: 3324 | OA
R. Piskac and T. Wies, “Decision procedures for automating termination proofs,” presented at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas, USA, 2011, vol. 6538, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3327
U. Boker and O. Kupferman, “Co-Büching them all,” presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Saarbrücken, Germany, 2011, vol. 6604, pp. 184–198.
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2011 | Conference Paper | IST-REx-ID: 3337
Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, and J. Peters, “Learning anticipation policies for robot table tennis,” presented at the IROS: RSJ International Conference on Intelligent Robots and Systems, San Francisco, USA, 2011, pp. 332–337.
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2011 | Preprint | IST-REx-ID: 3339 | OA
K. Chatterjee, L. De Alfaro, and R. Pritam, “Magnifying lens abstraction for stochastic games with discounted and long-run average objectives,” arXiv. ArXiv, 2011.
[Preprint] View | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3342 | OA
K. Chatterjee, M. H. Henzinger, M. Joglekar, and S. Nisarg, “Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives,” presented at the CAV: Computer Aided Verification, Snowbird, USA, 2011, vol. 6806, pp. 260–276.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3347 | OA
K. Chatterjee and N. Fijalkow, “Finitary languages,” presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain, 2011, vol. 6638, pp. 216–226.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3346 | OA
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, and A. Kučera, “Two views on multiple mean payoff objectives in Markov Decision Processes,” presented at the LICS: Logic in Computer Science, Toronto, Canada, 2011.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
K. Chatterjee and V. Prabhu, “Synthesis of memory efficient real time controllers for safety objectives,” presented at the HSCC: Hybrid Systems - Computation and Control, Chicago, USA, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3344
K. Chatterjee, “Graph games with reachability objectives,” presented at the RP: Reachability Problems, Genoa, Italy, 2011, vol. 6945, pp. 1–1.
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
K. Chatterjee and M. H. Henzinger, “Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification,” presented at the SODA: Symposium on Discrete Algorithms, San Francisco, SA, United States, 2011, pp. 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
U. Boker and T. A. Henzinger, “Determinizing discounted-sum automata,” presented at the CSL: Computer Science Logic, Bergen, Norway, 2011, vol. 12, pp. 82–96.
[Published Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3361 | OA
P. Cerny, K. Chatterjee, and T. A. Henzinger, “The complexity of quantitative information flow problems,” presented at the CSF: Computer Security Foundations, Cernay-la-Ville, France, 2011, pp. 205–217.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3358 | OA
T. A. Henzinger, V. Singh, T. Wies, and D. Zufferey, “Scheduling large jobs by abstraction refinement,” presented at the EuroSys, Salzburg, Austria, 2011, pp. 329–342.
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2011 | Conference Paper | IST-REx-ID: 3359
P. Cerny and T. A. Henzinger, “From boolean to quantitative synthesis,” presented at the EMSOFT: Embedded Software , Taipei; Taiwan, 2011, pp. 149–154.
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2011 | Conference Paper | IST-REx-ID: 3357
K. Chatterjee, T. A. Henzinger, and F. Horn, “The complexity of request-response games,” presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain, 2011, vol. 6638, pp. 227–237.
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2011 | Journal Article | IST-REx-ID: 336
M. Ibáñez et al., “Growth kinetics of asymmetric Bi2S3 nanocrystals: Size distribution focusing in nanorods,” Journal of Physical Chemistry C, vol. 115, no. 16. American Chemical Society, pp. 7947–7955, 2011.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P. J. Heisenberg, and D. Kimelman, “Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail,” Developmental Biology, vol. 354, no. 1. Elsevier, pp. 102–110, 2011.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3376 | OA
M. T. Bollenbach and R. Kishony, “Resolution of gene regulatory conflicts caused by combinations of antibiotics,” Molecular Cell, vol. 42, no. 4. Cell Press, pp. 413–425, 2011.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
S. Logeswaran and N. H. Barton, “Mapping Mendelian traits in asexual progeny using changes in marker allele frequency,” Genetical Research, vol. 93, no. 3. Cambridge University Press, pp. 221–232, 2011.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
H. Edelsbrunner, D. Morozov, and A. Patel, “Quantifying transversality by measuring the robustness of intersections,” Foundations of Computational Mathematics, vol. 11, no. 3. Springer, pp. 345–361, 2011.
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2011 | Journal Article | IST-REx-ID: 3378
P. Bendich and J. Harer, “Persistent intersection homology,” Foundations of Computational Mathematics, vol. 11, no. 3. Springer, pp. 305–336, 2011.
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2011 | Journal Article | IST-REx-ID: 3388 | OA
L. V. Ugelvig, P. Nielsen, J. Boomsma, and D. Nash, “Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion,” BMC Evolutionary Biology, vol. 11, no. 201. BioMed Central, 2011.
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3384 | OA
G. Tkačik et al., “Natural images from the birthplace of the human eye,” PLoS One, vol. 6, no. 6. Public Library of Science, 2011.
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3387 | OA
A. Kupczok, “Split based computation of majority rule supertrees,” BMC Evolutionary Biology, vol. 11, no. 205. BioMed Central, 2011.
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3389
M. Blaschko, J. Shelton, A. Bartels, C. Lampert, and A. Gretton, “Semi supervised kernel canonical correlation analysis with application to human fMRI,” Pattern Recognition Letters, vol. 32, no. 11. Elsevier, pp. 1572–1583, 2011.
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2011 | Journal Article | IST-REx-ID: 3382
O. Kroemer, C. Lampert, and J. Peters, “Learning dynamic tactile sensing with robust vision based training,” IEEE Transactions on Robotics, vol. 27, no. 3. IEEE, pp. 545–557, 2011.
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2011 | Journal Article | IST-REx-ID: 3386
A. Schrempf, S. Cremer, and J. Heinze, “Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies,” Journal of Evolutionary Biology, vol. 24, no. 7. Wiley-Blackwell, pp. 1455–1461, 2011.
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2011 | Journal Article | IST-REx-ID: 3385
M. K. Sixt, “Interstitial locomotion of leukocytes,” Immunology Letters, vol. 138, no. 1. Elsevier, pp. 32–34, 2011.
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2011 | Journal Article | IST-REx-ID: 3383
C.-P. J. Heisenberg, “Invited Lectures ‐ Symposia Area,” FEBS Journal, vol. 278, no. S1. Wiley-Blackwell, pp. 24–24, 2011.
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2011 | Journal Article | IST-REx-ID: 3399 | OA
S. Cremer, A. Schrempf, and J. Heinze, “Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior,” PLoS One, vol. 6, no. 3. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3401
S. Little, G. Tkačik, T. Kneeland, E. Wieschaus, and T. Gregor, “The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source,” PLoS Biology, vol. 9, no. 3. Public Library of Science, 2011.
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