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8566 Publications
2006 | Journal Article | IST-REx-ID: 3729
Direct measurement of single-molecule visco-elasticity in atomic force microscope force-extension experiments
C. Bippes, A. Humphris, M. Stark, D. Mueller, H.L. Janovjak, European Biophysics Journal 35 (2006) 287–292.
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| DOI
C. Bippes, A. Humphris, M. Stark, D. Mueller, H.L. Janovjak, European Biophysics Journal 35 (2006) 287–292.
2006 | Journal Article | IST-REx-ID: 3728
Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment
M. Cieplak, S. Filipek, H.L. Janovjak, K. Krzysko, Biochimica et Biophysica Acta (BBA) - Biomembranes 1758 (2006) 537–544.
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| DOI
M. Cieplak, S. Filipek, H.L. Janovjak, K. Krzysko, Biochimica et Biophysica Acta (BBA) - Biomembranes 1758 (2006) 537–544.
2006 | Book Chapter | IST-REx-ID: 3722
Rastersondenmikroskopie
H.L. Janovjak, D. Mueller, in:, Bioanalytik, Spektrum Akademischer Verlag, 2006.
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H.L. Janovjak, D. Mueller, in:, Bioanalytik, Spektrum Akademischer Verlag, 2006.
2006 | Journal Article | IST-REx-ID: 3755 |

Dynamical determinants of drug-inducible gene expression in a single bacterium
T. Le, T. Emonet, S. Harlepp, C.C. Guet, P. Cluzel, Biophysical Journal 90 (2006) 3315–3321.
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T. Le, T. Emonet, S. Harlepp, C.C. Guet, P. Cluzel, Biophysical Journal 90 (2006) 3315–3321.
2006 | Conference Paper | IST-REx-ID: 3758
Keyframe control of complex particle systems using the adjoint method
C. Wojtan, P. Mucha, G. Turk, in:, ACM, 2006, pp. 15–23.
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C. Wojtan, P. Mucha, G. Turk, in:, ACM, 2006, pp. 15–23.
2006 | Journal Article | IST-REx-ID: 3818
Patch-clamp recording from mossy fiber terminals in hippocampal slices
J. Bischofberger, D. Engel, L. Li, J. Geiger, P.M. Jonas, Nature Protocols 1 (2006) 2075–81.
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J. Bischofberger, D. Engel, L. Li, J. Geiger, P.M. Jonas, Nature Protocols 1 (2006) 2075–81.
2006 | Conference Paper | IST-REx-ID: 3890
The complexity of quantitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, SIAM, 2006, pp. 678–687.
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, SIAM, 2006, pp. 678–687.
2006 | Conference Paper | IST-REx-ID: 3889
Algorithms for omega-regular games with imperfect information
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2006, pp. 287–302.
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K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2006, pp. 287–302.
2006 | Conference Paper | IST-REx-ID: 3891
Concurrent games with tail objectives
K. Chatterjee, in:, Springer, 2006, pp. 256–270.
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K. Chatterjee, in:, Springer, 2006, pp. 256–270.
2006 | Conference Paper | IST-REx-ID: 3888
Strategy improvement for stochastic Rabin and Streett games
K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2006, pp. 375–389.
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K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2006, pp. 375–389.
2006 | Journal Article | IST-REx-ID: 3908
Long repeats in a huge gemome: microsatellite loci in the grasshopper Chorthippus biguttulus
J. Ustinova, R. Achmann, S. Cremer, F. Mayer, Journal of Molecular Evolution 62 (2006) 158–167.
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J. Ustinova, R. Achmann, S. Cremer, F. Mayer, Journal of Molecular Evolution 62 (2006) 158–167.
2006 | Journal Article | IST-REx-ID: 3934
Characterization of a conduit system containing laminin-5 in the human thymus: a potential transport system for small molecules
M. Drumea Mirancea, J. Wessels, C. Müller, M. Essl, J. Eble, E. Tolosa, M. Koch, D. Reinhardt, M.K. Sixt, L. Sorokin, Y. Stierhof, H. Schwarz, G. Klein, Journal of Cell Science 119 (2006) 1396–1405.
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M. Drumea Mirancea, J. Wessels, C. Müller, M. Essl, J. Eble, E. Tolosa, M. Koch, D. Reinhardt, M.K. Sixt, L. Sorokin, Y. Stierhof, H. Schwarz, G. Klein, Journal of Cell Science 119 (2006) 1396–1405.
2006 | Journal Article | IST-REx-ID: 3935
γ-Parvin is dispensable for hematopoiesis, leukocyte trafficking, and T-cell-dependent antibody response
H. Chu, I. Thievessen, M.K. Sixt, T. Lämmermann, A. Waisman, A. Braun, A. Noegel, R. Fässler, Molecular and Cellular Biology 26 (2006) 1817–1825.
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H. Chu, I. Thievessen, M.K. Sixt, T. Lämmermann, A. Waisman, A. Braun, A. Noegel, R. Fässler, Molecular and Cellular Biology 26 (2006) 1817–1825.
2006 | Journal Article | IST-REx-ID: 3936
β1 integrins: zip codes and signaling relay for blood cells
M.K. Sixt, M. Bauer, T. Lämmermann, R. Fässler, Current Opinion in Cell Biology 18 (2006) 482–490.
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M.K. Sixt, M. Bauer, T. Lämmermann, R. Fässler, Current Opinion in Cell Biology 18 (2006) 482–490.
2006 | Journal Article | IST-REx-ID: 4140
Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane
S. Witzel, V. Zimyanin, F. Carreira Barbosa, M. Tada, C.-P.J. Heisenberg, Journal of Cell Biology 175 (2006) 791–802.
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S. Witzel, V. Zimyanin, F. Carreira Barbosa, M. Tada, C.-P.J. Heisenberg, Journal of Cell Biology 175 (2006) 791–802.
2006 | Journal Article | IST-REx-ID: 4145
Single-cell detection of microRNAs in developing vertebrate embryos after acute administration of a dual-fluorescence reporter/sensor plasmid
D. Tonelli, F. Calegari, J. Fei, T. Nomura, N. Osumi, C.-P.J. Heisenberg, W. Huttner, Biotechniques 41 (2006) 727–732.
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D. Tonelli, F. Calegari, J. Fei, T. Nomura, N. Osumi, C.-P.J. Heisenberg, W. Huttner, Biotechniques 41 (2006) 727–732.
2006 | Journal Article | IST-REx-ID: 4176
Identification of regulators of germ layer morphogenesis using proteomics in zebrafish
V. Link, L. Carvalho, I. Castanon, P. Stockinger, A. Shevchenko, C.-P.J. Heisenberg, Journal of Cell Science 119 (2006) 2073–2083.
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V. Link, L. Carvalho, I. Castanon, P. Stockinger, A. Shevchenko, C.-P.J. Heisenberg, Journal of Cell Science 119 (2006) 2073–2083.
2006 | Journal Article | IST-REx-ID: 4173 |

Proteomics of early zebrafish embryos
V. Link, A. Shevchenko, C.-P.J. Heisenberg, BMC Developmental Biology 6 (2006) 1–9.
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V. Link, A. Shevchenko, C.-P.J. Heisenberg, BMC Developmental Biology 6 (2006) 1–9.
2006 | Journal Article | IST-REx-ID: 4178
Analysis and visualization of cell movement in the developing zebrafish brain
T. Langenberg, T. Dracz, A. Oates, C.-P.J. Heisenberg, M. Brand, Developmental Dynamics 235 (2006) 928–933.
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T. Langenberg, T. Dracz, A. Oates, C.-P.J. Heisenberg, M. Brand, Developmental Dynamics 235 (2006) 928–933.
2006 | Journal Article | IST-REx-ID: 4184
Coordinated cell-shape changes control epithelial movement in zebrafish and Drosophila
M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Development 133 (2006) 2671–2681.
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M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Development 133 (2006) 2671–2681.
2006 | Journal Article | IST-REx-ID: 4218
Migration of zebrafish primordial germ cells: A role for myosin contraction and cytoplasmic flow
H. Blaser, M. Reichman Fried, I. Castanon, K. Dumstrei, F. Marlow, K. Kawakami, L. Solnica Krezel, C.-P.J. Heisenberg, E. Raz, Developmental Cell 11 (2006) 613–627.
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H. Blaser, M. Reichman Fried, I. Castanon, K. Dumstrei, F. Marlow, K. Kawakami, L. Solnica Krezel, C.-P.J. Heisenberg, E. Raz, Developmental Cell 11 (2006) 613–627.
2006 | Journal Article | IST-REx-ID: 4237
Density-dependence as a size-independent regulatory mechanism
H. de Vladar, Journal of Theoretical Biology 238 (2006) 245–256.
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H. de Vladar, Journal of Theoretical Biology 238 (2006) 245–256.
2006 | Journal Article | IST-REx-ID: 4235
Dynamic response of cancer under the influence of immunological activity and therapy
H. de Vladar, J. González, Journal of Theoretical Biology (2006) 91–109.
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H. de Vladar, J. González, Journal of Theoretical Biology (2006) 91–109.
2006 | Journal Article | IST-REx-ID: 4248
The Hill-Robertson effect and the evolution of recombination
D. Roze, N.H. Barton, Genetics 173 (2006) 1793–1811.
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D. Roze, N.H. Barton, Genetics 173 (2006) 1793–1811.
2006 | Book Review | IST-REx-ID: 4250
Evolutionary Biology: How did the human species form?
N.H. Barton, Current Biology 16 (2006) 647–650.
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N.H. Barton, Current Biology 16 (2006) 647–650.
2006 | Conference Paper | IST-REx-ID: 4359
Field Constraint Analysis
T. Wies, V. Kuncak, P. Lam, A. Podelski, M. Rinard, in:, Springer, 2006, pp. 157–173.
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T. Wies, V. Kuncak, P. Lam, A. Podelski, M. Rinard, in:, Springer, 2006, pp. 157–173.
2006 | Conference Paper | IST-REx-ID: 4373
Real Time Temporal Logic: Past, Present, Future
O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2006, pp. 2–16.
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O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2006, pp. 2–16.
2006 | Conference Paper | IST-REx-ID: 4374
From MITL to Timed Automata
O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2006, pp. 274–289.
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O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2006, pp. 274–289.
2006 | Conference Paper | IST-REx-ID: 4406
Antichains: A new algorithm for checking universality of finite automata
M. De Wulf, L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2006, pp. 17–30.
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M. De Wulf, L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2006, pp. 17–30.
2006 | Conference Paper | IST-REx-ID: 4401
Preserving Secrecy Under Refinement
R. Alur, P. Cerny, S. Zdancewic, in:, Springer, 2006, pp. 107–118.
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R. Alur, P. Cerny, S. Zdancewic, in:, Springer, 2006, pp. 107–118.
2006 | Conference Paper | IST-REx-ID: 4437
Solving games without determinization
T.A. Henzinger, N. Piterman, in:, Springer, 2006, pp. 395–410.
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T.A. Henzinger, N. Piterman, in:, Springer, 2006, pp. 395–410.
2006 | Conference Paper | IST-REx-ID: 4436
An interface algebra for real-time components
T.A. Henzinger, S. Matic, in:, IEEE, 2006, pp. 253–266.
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T.A. Henzinger, S. Matic, in:, IEEE, 2006, pp. 253–266.
2006 | Conference Paper | IST-REx-ID: 4432
Timed alternating-time temporal logic
T.A. Henzinger, V. Prabhu, in:, Springer, 2006, pp. 1–17.
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T.A. Henzinger, V. Prabhu, in:, Springer, 2006, pp. 1–17.
2006 | Conference Paper | IST-REx-ID: 4431
The embedded systems design challenge
T.A. Henzinger, J. Sifakis, in:, Springer, 2006, pp. 1–15.
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T.A. Henzinger, J. Sifakis, in:, Springer, 2006, pp. 1–15.
2006 | Journal Article | IST-REx-ID: 4451
On the universal and existential fragments of the mu-calculus
T.A. Henzinger, O. Kupferman, R. Majumdar, Theoretical Computer Science 354 (2006) 173–186.
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T.A. Henzinger, O. Kupferman, R. Majumdar, Theoretical Computer Science 354 (2006) 173–186.
2006 | Conference Paper | IST-REx-ID: 4523
Synergy: A new algorithm for property checking
B. Gulavani, T.A. Henzinger, Y. Kannan, A. Nori, S. Rajamani, in:, ACM, 2006, pp. 117–127.
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B. Gulavani, T.A. Henzinger, Y. Kannan, A. Nori, S. Rajamani, in:, ACM, 2006, pp. 117–127.
2006 | Conference Paper | IST-REx-ID: 4526
A hierarchical coordination language for interacting real-time tasks
A. Ghosal, T.A. Henzinger, D. Iercan, C. Kirsch, A. Sangiovanni Vincentelli, in:, ACM, 2006, pp. 132–141.
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A. Ghosal, T.A. Henzinger, D. Iercan, C. Kirsch, A. Sangiovanni Vincentelli, in:, ACM, 2006, pp. 132–141.
2006 | Conference Paper | IST-REx-ID: 4528
Executable biology
J. Fisher, T.A. Henzinger, in:, IEEE, 2006, pp. 1675–1682.
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J. Fisher, T.A. Henzinger, in:, IEEE, 2006, pp. 1675–1682.
2006 | Conference Paper | IST-REx-ID: 4539
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, in:, Springer, 2006, pp. 257–271.
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K. Chatterjee, T.A. Henzinger, in:, Springer, 2006, pp. 257–271.
2006 | Conference Paper | IST-REx-ID: 4538
Strategy improvement and randomized subexponential algorithms for stochastic parity games
K. Chatterjee, T.A. Henzinger, in:, Springer, 2006, pp. 512–523.
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K. Chatterjee, T.A. Henzinger, in:, Springer, 2006, pp. 512–523.
2006 | Conference Paper | IST-REx-ID: 4551
Markov decision processes with multiple objectives
K. Chatterjee, R. Majumdar, T.A. Henzinger, in:, Springer, 2006, pp. 325–336.
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| DOI
K. Chatterjee, R. Majumdar, T.A. Henzinger, in:, Springer, 2006, pp. 325–336.
2006 | Journal Article | IST-REx-ID: 4550
Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziński, Theoretical Computer Science 365 (2006) 67–82.
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K. Chatterjee, T.A. Henzinger, M. Jurdziński, Theoretical Computer Science 365 (2006) 67–82.
2006 | Conference Paper | IST-REx-ID: 4549
Compositional quantitative reasoning
K. Chatterjee, L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, in:, IEEE, 2006, pp. 179–188.
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K. Chatterjee, L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, in:, IEEE, 2006, pp. 179–188.
2006 | Conference Paper | IST-REx-ID: 4552
Strategy improvement for concurrent reachability games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, IEEE, 2006, pp. 291–300.
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, IEEE, 2006, pp. 291–300.
2006 | Conference Paper | IST-REx-ID: 4574
Lazy shape analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2006, pp. 532–546.
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D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2006, pp. 532–546.
2006 | Preprint | IST-REx-ID: 573 |

Counterfactual computation revisited
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, (2006).
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| arXiv
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, (2006).
2006 | Preprint | IST-REx-ID: 574 |

Weak measurements and counterfactual computation
O. Hosten, P. Kwiat, (2006).
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| arXiv
O. Hosten, P. Kwiat, (2006).
2006 | Conference Paper | IST-REx-ID: 578
Towards a quasi-deterministic single-photon source
N. Peters, K. Arnold, A. Vandevender, E. Jeffrey, R. Rangarajan, O. Hosten, J. Barreiro, J. Altepeter, P. Kwiat, in:, SPIE, 2006.
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N. Peters, K. Arnold, A. Vandevender, E. Jeffrey, R. Rangarajan, O. Hosten, J. Barreiro, J. Altepeter, P. Kwiat, in:, SPIE, 2006.
2006 | Conference Paper | IST-REx-ID: 577
High-efficiency single-photon detectors
R. Rangarajan, J. Altepeter, E. Jeffrey, M. Stoutimore, N. Peters, O. Hosten, P. Kwiat, in:, SPIE, 2006.
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R. Rangarajan, J. Altepeter, E. Jeffrey, M. Stoutimore, N. Peters, O. Hosten, P. Kwiat, in:, SPIE, 2006.
2006 | Journal Article | IST-REx-ID: 579
Counterfactual quantum computation through quantum interrogation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, Nature 439 (2006) 949–952.
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| DOI
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, Nature 439 (2006) 949–952.