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Gasper Tkacik

Sofia Backlund

Alexis Benichou

Céline Camila Coraly Bräutigam

Athina Diakogianni

Krishnan Iyer

Reka Borbely

Björn Kscheschinski

Teemu Kuosmanen

Gabor Lengyel

Ekaterina Maksimova

Elia Mascolo

Pablo Mateu Hoyos

Anuj Patel

Tetiana Rabiichuk

Simon Rella

Julian Renaud

Natalia Ruzickova

Puzhen Xia

Bahti Zakirov

Alex Chen Yi Zhang

Tereza Zuskinova

Gabriel Mitchell

Anna Andersson

Katarina Bodova

Vicent Botella Soler

David Brückner

Sarah Cepeda Humerez

Remy Chait

Matthew Chalk

Heloisa Chiossi

Daniele De Martino

Tamar Friedlander

Mantas Gabrielaitis

Aditya Gilra

Rok Grah

Michal Hledik

Jan Humplik

Bor Kavcic

Moritz Lang

Anna Levina (Martius)

Fabrizio Lombardi

Georg Martius

Roshan Prizak

Georg Rieckh

Jakob Ruess

Cristina Savin

Sreyam Sengupta

Thomas Sokolowski



204 Publications

2016 | Published | Journal Article | IST-REx-ID: 1485 | OA
De Martino, D. (2016). Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology. IOP Publishing. https://doi.org/10.1088/1478-3975/13/1/016003
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2016 | Published | Conference Paper | IST-REx-ID: 8094 | OA
Martius, G. S., Hostettler, R., Knoll, A., & Der, R. (2016). Self-organized control of an tendon driven arm by differential extrinsic plasticity. In 15th International Conference on the Synthesis and Simulation of Living Systems (Vol. 28, pp. 142–143). Cancun, Mexico: MIT Press. https://doi.org/10.7551/978-0-262-33936-0-ch029
[Published Version] View | Files available | DOI
 
2016 | Published | Conference Paper | IST-REx-ID: 948 | OA
Monk, T., Savin, C., & Lücke, J. (2016). Neurons equipped with intrinsic plasticity learn stimulus intensity statistics (Vol. 29, pp. 4285–4293). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spaine: Neural Information Processing Systems Foundation.
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2016 | Research Data Reference | IST-REx-ID: 9869
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Error bound on an estimator of position. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s001
[Published Version] View | Files available | DOI
 
2016 | Research Data Reference | IST-REx-ID: 9870
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Computation of positional information in an Ising model. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s002
[Published Version] View | Files available | DOI
 
2016 | Research Data Reference | IST-REx-ID: 9871
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Computation of positional information in a discrete morphogen field. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s003
[Published Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
Lang, M., & Stelling, J. (2016). Modular parameter identification of biomolecular networks. SIAM Journal on Scientific Computing. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/15M103306X
[Submitted Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1188 | OA
De Martino, D., & Masoero, D. (2016). Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth. Journal of Statistical Mechanics: Theory and Experiment. IOP Publishing. https://doi.org/10.1088/1742-5468/aa4e8f
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1538 | OA
Ruess, J., Parise, F., Milias Argeitis, A., Khammash, M., & Lygeros, J. (2015). Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1423947112
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1539 | OA
Ruess, J. (2015). Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space. Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/1.4937937
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1564 | OA
Gilson, M., Savin, C., & Zenke, F. (2015). Editorial: Emergent neural computation from the interaction of different forms of plasticity. Frontiers in Computational Neuroscience. Frontiers Research Foundation. https://doi.org/10.3389/fncom.2015.00145
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1570 | OA
Der, R., & Martius, G. S. (2015). Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1508400112
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, S. A., Rieckh, G., & Tkačik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.115.248101
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1655 | OA
Martius, G. S., & Olbrich, E. (2015). Quantifying emergent behavior of autonomous robots. Entropy. MDPI. https://doi.org/10.3390/e17107266
[Published Version] View | Files available | DOI | WoS
 
earlier version | 2015 | Published | Conference Paper | IST-REx-ID: 1658
Bogomolov, S., Henzinger, T. A., Podelski, A., Ruess, J., & Schilling, C. (2015). Adaptive moment closure for parameter inference of biochemical reaction networks. Presented at the CMSB: Computational Methods in Systems Biology, Nantes, France: Springer. https://doi.org/10.1007/978-3-319-23401-4_8
View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Tugrul, M., Paixao, T., Barton, N. H., & Tkačik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1005639
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1697 | OA
Marre, O., Botella Soler, V., Simmons, K., Mora, T., Tkačik, G., & Berry, M. (2015). High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1004304
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1701 | OA
Tkačik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., & Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1514188112
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1861
Ruess, J., & Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation. ACM. https://doi.org/10.1145/2688906
View | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1885 | OA
Tkačik, G., Dubuis, J., Petkova, M., & Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.114.171850
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

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