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301 Publications
2020 | Published | Journal Article | IST-REx-ID: 8168 | 
Kulmuni J, Butlin RK, Lucek K, Savolainen V, Westram AM. Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers. Philosophical Transactions of the Royal Society Series B: Biological sciences. 2020;375(1806). doi:10.1098/rstb.2019.0528
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2020 | Research Data Reference | IST-REx-ID: 8809 |
Perini S, Rafajlovic M, Westram AM, Johannesson K, Butlin R. Data from: Assortative mating, sexual selection and their consequences for gene flow in Littorina. 2020. doi:10.5061/dryad.qrfj6q5cn
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2020 | Published | Journal Article | IST-REx-ID: 8112 |
Barton NH. On the completion of speciation. Philosophical Transactions of the Royal Society Series B: Biological Sciences. 2020;375(1806). doi:10.1098/rstb.2019.0530
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2019 | Published | Journal Article | IST-REx-ID: 6022 |
Merrill RM, Rastas P, Martin SH, et al. Genetic dissection of assortative mating behavior. PLoS Biology. 2019;17(2). doi:10.1371/journal.pbio.2005902
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2019 | Published | Journal Article | IST-REx-ID: 6090 |
Carballo-Pacheco M, Desponds J, Gavrilchenko T, et al. Receptor crosstalk improves concentration sensing of multiple ligands. Physical Review E. 2019;99(2). doi:10.1103/PhysRevE.99.022423
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2019 | Published | Journal Article | IST-REx-ID: 6095 |
Faria R, Chaube P, Morales HE, et al. Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology. 2019;28(6):1375-1393. doi:10.1111/mec.14972
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2019 | Published | Book Chapter | IST-REx-ID: 8281
Barton NH, Etheridge A. Mathematical models in population genetics. In: Balding D, Moltke I, Marioni J, eds. Handbook of Statistical Genomics. 4th ed. Wiley; 2019:115-144. doi:10.1002/9781119487845.ch4
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2019 | Published | Journal Article | IST-REx-ID: 6230 |
Barton NH, Hermisson J, Nordborg M. Why structure matters. eLife. 2019;8. doi:10.7554/eLife.45380
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2019 | Published | Journal Article | IST-REx-ID: 6466 |
Field D, Fraisse C. Breaking down barriers in morning glories. Molecular ecology. 2019;28(7):1579-1581. doi:10.1111/mec.15048
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2019 | Published | Journal Article | IST-REx-ID: 6680 |
Sachdeva H. Effect of partial selfing and polygenic selection on establishment in a new habitat. Evolution. 2019;73(9):1729-1745. doi:10.1111/evo.13812
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2019 | Published | Journal Article | IST-REx-ID: 6855 |
Sella G, Barton NH. Thinking about the evolution of complex traits in the era of genome-wide association studies. Annual Review of Genomics and Human Genetics. 2019;20:461-493. doi:10.1146/annurev-genom-083115-022316
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2019 | Published | Journal Article | IST-REx-ID: 6857 |
Giese B, Friess JL, Schetelig MF, et al. Gene Drives: Dynamics and regulatory matters – A report from the workshop “Evaluation of spatial and temporal control of Gene Drives”, 4 – 5 April 2019, Vienna. BioEssays. 2019;41(11). doi:10.1002/bies.201900151
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2019 | Published | Journal Article | IST-REx-ID: 6858 |
Barton NH. Is speciation driven by cycles of mixing and isolation? National Science Review. 2019;6(2):291-292. doi:10.1093/nsr/nwy113
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2019 | Research Data Reference | IST-REx-ID: 9801
Merrill RM, Rastas P, Martin SH, et al. Raw behavioral data. 2019. doi:10.1371/journal.pbio.2005902.s006
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2019 | Research Data Reference | IST-REx-ID: 9802 |
Sachdeva H. Data from: Effect of partial selfing and polygenic selection on establishment in a new habitat. 2019. doi:10.5061/dryad.8tp0900
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2019 | Research Data Reference | IST-REx-ID: 9804 |
Castro JP, Yancoskie MN, Marchini M, et al. Data from: An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice. 2019. doi:10.5061/dryad.0q2h6tk
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2019 | Research Data Reference | IST-REx-ID: 13067 |
Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin R. Data from: Is embryo abortion a postzygotic barrier to gene flow between Littorina ecotypes? 2019. doi:10.5061/DRYAD.TB2RBNZWK
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2019 | Published | Journal Article | IST-REx-ID: 6467 |
Fraisse, Christelle, The distribution of epistasis on simple fitness landscapes. Biology Letters 15 (4). 2019
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2019 | Published | Journal Article | IST-REx-ID: 5911 |
Faria R, Johannesson K, Butlin RK, Westram AM. Evolving inversions. Trends in Ecology and Evolution. 2019;34(3):239-248. doi:10.1016/j.tree.2018.12.005
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2019 | Published | Journal Article | IST-REx-ID: 6795 |
Trubenova B, Hager R. Green beards in the light of indirect genetic effects. Ecology and Evolution. 2019;9(17):9597-9608. doi:10.1002/ece3.5484
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2019 | Published | Journal Article | IST-REx-ID: 6089 |
Fraisse C, Puixeu Sala G, Vicoso B. Pleiotropy modulates the efficacy of selection in drosophila melanogaster. Molecular biology and evolution. 2019;36(3):500-515. doi:10.1093/molbev/msy246
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2019 | Published | Journal Article | IST-REx-ID: 6856 |
Pickup M, Barton NH, Brandvain Y, et al. Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow. New Phytologist. 2019;224(3):1035-1047. doi:10.1111/nph.16180
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2019 | Published | Journal Article | IST-REx-ID: 6831 |
Puixeu Sala G, Pickup M, Field D, Barrett SCH. Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics. New Phytologist. 2019;224(3):1108-1120. doi:10.1111/nph.16050
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2019 | Research Data Reference | IST-REx-ID: 9803 |
Puixeu Sala G, Pickup M, Field D, Barrett SCH. Data from: Variation in sexual dimorphism in a wind-pollinated plant: the influence of geographical context and life-cycle dynamics. 2019. doi:10.5061/dryad.n1701c9
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2019 | Published | Journal Article | IST-REx-ID: 6637 |
Trubenova B, Krejca M, Lehre PK, Kötzing T. Surfing on the seascape: Adaptation in a changing environment. Evolution. 2019;73(7):1356-1374. doi:10.1111/evo.13784
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2019 | Published | Journal Article | IST-REx-ID: 7393 |
Morales HE, Faria R, Johannesson K, et al. Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast. Science Advances. 2019;5(12). doi:10.1126/sciadv.aav9963
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2019 | Research Data Reference | IST-REx-ID: 9839 |
Polechova J. Data from: Is the sky the limit? On the expansion threshold of a species’ range. 2019. doi:10.5061/dryad.5vv37
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2019 | Research Data Reference | IST-REx-ID: 9805 |
Barton NH. Data from: The consequences of an introgression event. 2019. doi:10.5061/dryad.2kb6fh4
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2019 | Published | Thesis | IST-REx-ID: 6071 |
Prizak R. Coevolution of transcription factors and their binding sites in sequence space. 2019. doi:10.15479/at:ista:th6071
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2019 | Published | Journal Article | IST-REx-ID: 6713 |
Castro JP, Yancoskie MN, Marchini M, et al. An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice. eLife. 2019;8. doi:10.7554/eLife.42014
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2018 | Published | Journal Article | IST-REx-ID: 139 |
Fraisse C, Roux C, Gagnaire P, et al. The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ. 2018;2018(7). doi:10.7717/peerj.5198
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2018 | Published | Journal Article | IST-REx-ID: 282 |
Sachdeva H, Barton NH. Introgression of a block of genome under infinitesimal selection. Genetics. 2018;209(4):1279-1303. doi:10.1534/genetics.118.301018
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2018 | Published | Journal Article | IST-REx-ID: 430 |
Novembre J, Barton NH. Tread lightly interpreting polygenic tests of selection. Genetics. 2018;208(4):1351-1355. doi:10.1534/genetics.118.300786
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2018 | Published | Journal Article | IST-REx-ID: 607 |
Bodova K, Haskovec J, Markowich P. Well posedness and maximum entropy approximation for the dynamics of quantitative traits. Physica D: Nonlinear Phenomena. 2018;376-377:108-120. doi:10.1016/j.physd.2017.10.015
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2018 | Published | Journal Article | IST-REx-ID: 33 |
Bertl J, Ringbauer H, Blum M. Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ. 2018;2018(10). doi:10.7717/peerj.5325
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2018 | Published | Journal Article | IST-REx-ID: 563 |
Ringbauer H, Kolesnikov A, Field D, Barton NH. Estimating barriers to gene flow from distorted isolation-by-distance patterns. Genetics. 2018;208(3):1231-1245. doi:10.1534/genetics.117.300638
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2018 | Research Data Reference | IST-REx-ID: 9837 |
Faria R, Chaube P, Morales HE, et al. Data from: Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. 2018. doi:10.5061/dryad.72cg113
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2018 | Published | Journal Article | IST-REx-ID: 38 |
Tavares, Hugo, Selection and gene flow shape genomic islands that control floral guides. PNAS 115 (43). 2018
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2018 | Published | Journal Article | IST-REx-ID: 39 |
Sachdeva, Himani, Replicability of introgression under linked, polygenic selection. Genetics 210 (4). 2018
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2018 | Published | Thesis | IST-REx-ID: 200 |
Ringbauer H. Inferring recent demography from spatial genetic structure. 2018. doi:10.15479/AT:ISTA:th_963
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2018 | Published | Journal Article | IST-REx-ID: 286
Ellis T, Field D, Barton NH. Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources. 2018;18(5):988-999. doi:10.1111/1755-0998.12782
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2018 | Research Data | IST-REx-ID: 5583 |
Ellis T. Data and Python scripts supporting Python package FAPS. 2018. doi:10.15479/AT:ISTA:95
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2018 | Published | Journal Article | IST-REx-ID: 564 |
Barton NH, Etheridge A. Establishment in a new habitat by polygenic adaptation. Theoretical Population Biology. 2018;122(7):110-127. doi:10.1016/j.tpb.2017.11.007
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2018 | Published | Journal Article | IST-REx-ID: 316 |
Bodova K, Priklopil T, Field D, Barton NH, Pickup M. Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system. Genetics. 2018;209(3):861-883. doi:10.1534/genetics.118.300748
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2018 | Research Data Reference | IST-REx-ID: 9813 |
Bodova K, Priklopil T, Field D, Barton NH, Pickup M. Supplemental material for Bodova et al., 2018. 2018. doi:10.25386/genetics.6148304.v1
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2018 | Published | Journal Article | IST-REx-ID: 423 |
Payne P, Geyrhofer L, Barton NH, Bollback JP. CRISPR-based herd immunity can limit phage epidemics in bacterial populations. eLife. 2018;7. doi:10.7554/eLife.32035
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2018 | Research Data Reference | IST-REx-ID: 9840 |
Payne P, Geyrhofer L, Barton NH, Bollback JP. Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations. 2018. doi:10.5061/dryad.42n44
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2018 | Research Data | IST-REx-ID: 5757 |
Fraisse C. Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.” 2018. doi:10.15479/at:ista:/5757
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2018 | Published | Journal Article | IST-REx-ID: 723 |
Oliveto P, Paixao T, Pérez Heredia J, Sudholt D, Trubenova B. How to escape local optima in black box optimisation when non elitism outperforms elitism. Algorithmica. 2018;80(5):1604-1633. doi:10.1007/s00453-017-0369-2
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2018 | Published | Journal Article | IST-REx-ID: 315 |
Polechova, Jitka, Is the sky the limit? On the expansion threshold of a species’ range. PLoS Biology 16 (6). 2018
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2018 | Published | Journal Article | IST-REx-ID: 40 |
Barton, Nicholas H, The consequences of an introgression event. Molecular Ecology 27 (24). 2018
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2018 | Published | Journal Article | IST-REx-ID: 565 |
Charlesworth B, Barton NH. The spread of an inversion with migration and selection. Genetics. 2018;208(1):377-382. doi:10.1534/genetics.117.300426
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2017 | Published | Conference Paper | IST-REx-ID: 1112
Paixao T, Pérez Heredia J. An application of stochastic differential equations to evolutionary algorithms. In: Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms. ACM; 2017:3-11. doi:10.1145/3040718.3040729
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2017 | Published | Thesis | IST-REx-ID: 6291 |
Payne P. Bacterial herd and social immunity to phages. 2017.
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2017 | Published | Journal Article | IST-REx-ID: 953 |
Charlesworth D, Barton NH, Charlesworth B. The sources of adaptive evolution. Proceedings of the Royal Society of London Series B Biological Sciences. 2017;284(1855). doi:10.1098/rspb.2016.2864
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2017 | Published | Journal Article | IST-REx-ID: 952 |
Turelli, Michael, Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti. Theoretical Population Biology 115. 2017
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2017 | Published | Journal Article | IST-REx-ID: 626 |
Barton, Nicholas H, The infinitesimal model: Definition derivation and implications. Theoretical Population Biology 118. 2017
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2017 | Published | Journal Article | IST-REx-ID: 1074 |
Ringbauer, Harald, Inferring recent demography from isolation by distance of long shared sequence blocks. Genetics 205 (3). 2017
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2017 | Published | Journal Article | IST-REx-ID: 1063 |
Uecker, Hildegard, Evolutionary rescue in randomly mating, selfing, and clonal populations. Evolution 71 (4). 2017
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2017 | Published | Journal Article | IST-REx-ID: 1199 |
Barton NH. How does epistasis influence the response to selection? Heredity. 2017;118:96-109. doi:10.1038/hdy.2016.109
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2017 | Research Data Reference | IST-REx-ID: 9842 |
Etheridge A, Barton NH. Data for: Establishment in a new habitat by polygenic adaptation. 2017. doi:10.17632/nw68fxzjpm.1
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2017 | Published | Journal Article | IST-REx-ID: 990 |
Sachdeva, Himani, Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow. Evolution; International Journal of Organic Evolution 71 (6). 2017
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2017 | Published | Journal Article | IST-REx-ID: 910 |
Novak S, Barton NH. When does frequency-independent selection maintain genetic variation? Genetics. 2017;207(2):653-668. doi:10.1534/genetics.117.300129
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2017 | Published | Journal Article | IST-REx-ID: 1111 |
Heredia, Jorge, Selection limits to adaptive walks on correlated landscapes. Genetics 205 (2). 2017
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2017 | Published | Journal Article | IST-REx-ID: 1336 |
Paixao T, Pérez Heredia J, Sudholt D, Trubenova B. Towards a runtime comparison of natural and artificial evolution. Algorithmica. 2017;78(2):681-713. doi:10.1007/s00453-016-0212-1
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2017 | Published | Journal Article | IST-REx-ID: 1169 |
Novak, Sebastian, Spatial gene frequency waves under genotype dependent dispersal. Genetics 205 (1). 2017
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2017 | Published | Journal Article | IST-REx-ID: 955 |
Friedlander, Tamar, Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications 8 (1). 2017
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2017 | Published | Journal Article | IST-REx-ID: 951 |
Schmidt, Tom, Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. PLoS Biology 15 (5). 2017
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2017 | Research Data Reference | IST-REx-ID: 9858
Schmidt T, Barton NH, Rasic G, et al. Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. 2017. doi:10.1371/journal.pbio.2001894.s016
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2017 | Research Data Reference | IST-REx-ID: 9857
Schmidt T, Barton NH, Rasic G, et al. Supporting information concerning observed wMel frequencies and analyses of habitat variables. 2017. doi:10.1371/journal.pbio.2001894.s015
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2017 | Research Data Reference | IST-REx-ID: 9856
Schmidt T, Barton NH, Rasic G, et al. Supporting Information concerning additional likelihood analyses and results. 2017. doi:10.1371/journal.pbio.2001894.s014
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2017 | Published | Journal Article | IST-REx-ID: 614 |
Fraisse, Christelle, The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W. Nature Communications 8 (1). 2017
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2017 | Research Data | IST-REx-ID: 7163 |
Fraisse C. Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.” 2017. doi:10.15479/AT:ISTA:7163
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2017 | Published | Journal Article | IST-REx-ID: 1077 |
Fernandes Redondo, Rodrigo A, Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. Journal of the Royal Society Interface 14 (126). 2017
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2017 | Published | Journal Article | IST-REx-ID: 954 |
Lagator, Mato, On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife 6. 2017
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2017 | Published | Journal Article | IST-REx-ID: 570 |
Lagator, Mato, Regulatory network structure determines patterns of intermolecular epistasis. eLife 6. 2017
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2017 | Research Data Reference | IST-REx-ID: 9851
Lukacisinova M, Novak S, Paixao T. Heuristic prediction for multiple stresses. 2017. doi:10.1371/journal.pcbi.1005609.s003
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2017 | Research Data Reference | IST-REx-ID: 9852
Lukacisinova M, Novak S, Paixao T. Resistance frequencies for different combination strategies. 2017. doi:10.1371/journal.pcbi.1005609.s004
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2017 | Research Data Reference | IST-REx-ID: 9849
Lukacisinova M, Novak S, Paixao T. Modelling and simulation details. 2017. doi:10.1371/journal.pcbi.1005609.s001
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2017 | Research Data Reference | IST-REx-ID: 9850
Lukacisinova M, Novak S, Paixao T. Extensions of the model. 2017. doi:10.1371/journal.pcbi.1005609.s002
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2017 | Published | Journal Article | IST-REx-ID: 1191 |
Kollár R, Novak S. Existence of traveling waves for the generalized F–KPP equation. Bulletin of Mathematical Biology. 2017;79(3):525-559. doi:10.1007/s11538-016-0244-3
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2017 | Published | Journal Article | IST-REx-ID: 1351 |
Giacobbe, Mirco, Model checking the evolution of gene regulatory networks. Acta Informatica 54 (8). 2017
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2017 | Published | Journal Article | IST-REx-ID: 696 |
Lukacisinova, Marta, Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology 13 (7). 2017
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2016 | Published | Journal Article | IST-REx-ID: 1356 |
Barton NH. Sewall Wright on evolution in Mendelian populations and the “Shifting Balance.” Genetics. 2016;202(1):3-4. doi:10.1534/genetics.115.184796
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2016 | Published | Journal Article | IST-REx-ID: 1357 |
Barton NH. Richard Hudson and Norman Kaplan on the coalescent process. Genetics. 2016;202(3):865-866. doi:10.1534/genetics.116.187542
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2016 | Published | Journal Article | IST-REx-ID: 1409 |
Abbott R, Barton NH, Good J. Genomics of hybridization and its evolutionary consequences. Molecular Ecology. 2016;25(11):2325-2332. doi:10.1111/mec.13685
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2016 | Published | Journal Article | IST-REx-ID: 1158 |
Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Shedding light on the grey zone of speciation along a continuum of genomic divergence. PLoS Biology. 2016;14(12). doi:10.1371/journal.pbio.2000234
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2016 | Published | Journal Article | IST-REx-ID: 1172 |
Sachdeva H, Barma M, Rao M. Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae. Scientific Reports. 2016;6. doi:10.1038/srep38840
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2016 | Published | Journal Article | IST-REx-ID: 1224
Teitel Z, Pickup M, Field D, Barrett S. The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. Plant Biology. 2016;18(1):98-103. doi:10.1111/plb.12336
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| DOI
2016 | Published | Thesis | IST-REx-ID: 1398 |
Ellis T. The role of pollinator-mediated selection in the maintenance of a flower color polymorphism in an Antirrhinum majus hybrid zone. 2016. doi:10.15479/AT:ISTA:TH_526
[Published Version]
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| Files available
| DOI
2016 | Research Data | IST-REx-ID: 5553 |
Field D, Ellis T. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. 2016. doi:10.15479/AT:ISTA:37
[Published Version]
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| Files available
| DOI
2016 | Research Data | IST-REx-ID: 5551 |
Ellis T. Data on pollinator observations and offpsring phenotypes. 2016. doi:10.15479/AT:ISTA:35
[Published Version]
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| Files available
| DOI
2016 | Research Data | IST-REx-ID: 5552 |
Ellis T. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. 2016. doi:10.15479/AT:ISTA:36
[Published Version]
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| Files available
| DOI
2016 | Research Data | IST-REx-ID: 5554 |
Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. 2016. doi:10.15479/AT:ISTA:43
[Published Version]
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| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9862
Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Simulation study to test the robustness of ABC in face of recent times of divergence. 2016. doi:10.1371/journal.pbio.2000234.s016
[Published Version]
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| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9863
Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Accessions of surveyed individuals, geographic locations and summary statistics. 2016. doi:10.1371/journal.pbio.2000234.s017
[Published Version]
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| Files available
| DOI
2016 | Published | Thesis | IST-REx-ID: 1131 |
Tugrul M. Evolution of transcriptional regulatory sequences. 2016.
[Published Version]
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| Files available
2016 | Published | Thesis | IST-REx-ID: 1125 |
Novak S. Evolutionary proccesses in variable emvironments. 2016.
[Published Version]
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