ISTA Research Explorer

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237 Publications

2022 | Conference Paper | IST-REx-ID: 11476 |

Alwen J, Auerbach B, Cueto Noval M, et al. CoCoA: Concurrent continuous group key agreement. In: Advances in Cryptology – EUROCRYPT 2022. Vol 13276. Cham: Springer Nature; 2022:815–844. doi:10.1007/978-3-031-07085-3_28

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2022 | Journal Article | IST-REx-ID: 11556 |

Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics. Journal of Computational Physics. 2022;467. doi:10.1016/j.jcp.2022.111439

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2022 | Journal Article | IST-REx-ID: 11723 |

Li L, Chen H, Alotaibi SS, et al. RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis. Proceedings of the National Academy of Sciences. 2022;119(31). doi:10.1073/pnas.2121058119

2022 | Thesis | IST-REx-ID: 11945 |

Schulz R. Chimeric G protein-coupled receptors mimic distinct signaling pathways and modulate microglia function. 2022. doi:10.15479/at:ista:11945

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2022 | Conference Paper | IST-REx-ID: 11775 |

Henzinger TA, Mazzocchi NA, Sarac NE. Abstract monitors for quantitative specifications. In: 22nd International Conference on Runtime Verification. Vol 13498. Springer Nature; 2022:200-220. doi:10.1007/978-3-031-17196-3_11

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2022 | Thesis | IST-REx-ID: 12390 |

Brooks M. Translation-invariant quantum systems with effectively broken symmetry. 2022. doi:10.15479/at:ista:12390

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2022 | Thesis | IST-REx-ID: 11362 |

Lechner M. Learning verifiable representations. 2022. doi:10.15479/at:ista:11362

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2022 | Journal Article | IST-REx-ID: 9311 |

Chatterjee K, Saona Urmeneta RJ, Ziliotto B. Finite-memory strategies in POMDPs with long-run average objectives. Mathematics of Operations Research. 2022;47(1):100-119. doi:10.1287/moor.2020.1116

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2022 | Journal Article | IST-REx-ID: 11732 |

Henheik SJ, Lauritsen AB. The BCS energy gap at high density. Journal of Statistical Physics. 2022;189. doi:10.1007/s10955-022-02965-9

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2022 | Journal Article | IST-REx-ID: 10842

Köse S, Özbudak F. Factorization of some polynomials over finite local commutative rings and applications to certain self-dual and LCD codes. Cryptography and Communications. 2022;14(4):933-948. doi:10.1007/s12095-022-00557-8

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2022 | Thesis | IST-REx-ID: 11473 |

Mysliwy K. Polarons in Bose gases and polar crystals: Some rigorous energy estimates. 2022. doi:10.15479/at:ista:11473

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2022 | Preprint | IST-REx-ID: 12750 |

Brighi P, Ljubotina M, Serbyn M. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. arXiv. doi:10.48550/arXiv.2210.15607

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2022 | Journal Article | IST-REx-ID: 14355 |

Cali E, Lin S-J, Rocca C, Sahin Y, Al Shamsi A, El Chehadeh S, Chaabouni M, Mankad K, Galanaki E, Efthymiou S, Sudhakar S, Athanasiou-Fragkouli A, Celik T, Narli N, Bianca S, Murphy D, Moreira FMDC, Accogli A, Petree C, Huang K, Monastiri K, Edizadeh M, Nardello R, Ognibene M, De Marco P, Ruggieri M, Zara F, Striano P, Sahin Y, Al-Gazali L, Warde MTA, Gerard B, Zifarelli G, Beetz C, Fortuna S, Soler M, Valente EM, Varshney G, Maroofian R, Salpietro V, Houlden H, Grp SynS. 2022. A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease. Genetics in Medicine. 24(10), 2194–2203.

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2022 | Journal Article | IST-REx-ID: 11462

Dormeshkin D, Shapira M, Karputs A, et al. Combining of synthetic VHH and immune scFv libraries for pregnancy-associated glycoproteins ELISA development. Applied Microbiology and Biotechnology. 2022;106:5093-5103. doi:10.1007/s00253-022-12022-w

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2022 | Thesis | IST-REx-ID: 10799 |

Konstantinov NH. Robustness and fairness in machine learning. 2022. doi:10.15479/at:ista:10799

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2022 | Journal Article | IST-REx-ID: 10850 |

Roos B, Seiringer R. Two-particle bound states at interfaces and corners. Journal of Functional Analysis. 2022;282(12). doi:10.1016/j.jfa.2022.109455

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2022 | Journal Article | IST-REx-ID: 12117 |

Hübschmann V, Korkut M, Siegert S. Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay. STAR Protocols. 2022;3(4). doi:10.1016/j.xpro.2022.101866

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2022 | Journal Article | IST-REx-ID: 12291 |

Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.

2022 | Thesis | IST-REx-ID: 11626 |

Gallei MC. Auxin and strigolactone non-canonical signaling regulating development in Arabidopsis thaliana. 2022. doi:10.15479/at:ista:11626

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2022 | Journal Article | IST-REx-ID: 11403

Stöllner A. Measuring airborne nanoplastics using aerosol physics. Nature Reviews Earth and Environment. 2022;3(6):360. doi:10.1038/s43017-022-00302-y

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2022 | Research Data | IST-REx-ID: 10934 |

Radler P. In vitro reconstitution of Escherichia coli divisome activation. 2022. doi:10.15479/AT:ISTA:10934

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2022 | Research Data | IST-REx-ID: 11542 |

Schulz R. Source Data (Chimeric GPCRs mimic distinct signaling pathways and modulate microglia responses). 2022. doi:10.15479/AT:ISTA:11542

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2022 | Journal Article | IST-REx-ID: 11411 |

Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. Genetics. 2022;221(3). doi:10.1093/genetics/iyac083

2022 | Research Data | IST-REx-ID: 11321 |

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2022 | Thesis | IST-REx-ID: 12358 |

Sperl G. Homogenizing yarn simulations: Large-scale mechanics, small-scale detail, and quantitative fitting. 2022. doi:10.15479/at:ista:12103

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2022 | Thesis | IST-REx-ID: 10759 |

Rzadkowski W. Analytic and machine learning approaches to composite quantum impurities. 2022. doi:10.15479/at:ista:10759

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2022 | Journal Article | IST-REx-ID: 11660 |

Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. A window to the persistence of 1D maps. I: Geometric characterization of critical point pairs. LIPIcs.

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2022 | Journal Article | IST-REx-ID: 11658 |

Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Depth in arrangements: Dehn–Sommerville–Euler relations with applications. Leibniz International Proceedings on Mathematics.

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2022 | Journal Article | IST-REx-ID: 10787 |

Barton NH, Olusanya OO. The response of a metapopulation to a changing environment. Philosophical Transactions of the Royal Society B: Biological Sciences. 2022;377(1848). doi:10.1098/rstb.2021.0009

2022 | Journal Article | IST-REx-ID: 10658 |

Sachdeva H, Olusanya OO, Barton NH. Genetic load and extinction in peripheral populations: The roles of migration, drift and demographic stochasticity. Philosophical Transactions of the Royal Society B. 2022;377(1846). doi:10.1098/rstb.2021.0010

2022 | Thesis | IST-REx-ID: 12368 |

Arslan FN. Remodeling of E-cadherin-mediated contacts via cortical flows. 2022. doi:10.15479/at:ista:12153

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2022 | Thesis | IST-REx-ID: 11196 |

Kim O. Nanoarchitecture of hippocampal mossy fiber-CA3 pyramidal neuron synapses. 2022. doi:10.15479/at:ista:11196

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2022 | Thesis | IST-REx-ID: 10727 |

Metzler S. Pathogen-mediated sexual selection and immunization in ant colonies. 2022. doi:10.15479/AT:ISTA:10727

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2022 | Thesis | IST-REx-ID: 11879 |

Artner C. Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature. 2022. doi:10.15479/at:ista:11879

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2022 | Thesis | IST-REx-ID: 11393 |

Jevtic M. Contextual fear learning induced changes in AMPA receptor subtypes along the proximodistal axis in dorsal hippocampus. 2022. doi:10.15479/at:ista:11393

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2022 | Thesis | IST-REx-ID: 12366 |

Redchenko E. Controllable states of superconducting Qubit ensembles. 2022. doi:10.15479/at:ista:12132

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2022 | Thesis | IST-REx-ID: 11932 |

Nardin M. On the encoding, transfer, and consolidation of spatial memories. 2022. doi:10.15479/at:ista:11932

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2022 | Thesis | IST-REx-ID: 12378 |

Colombo G. MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes. 2022. doi:10.15479/at:ista:12378

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2022 | Thesis | IST-REx-ID: 11388 |

Belohlavy S. The genetic basis of complex traits studied via analysis of evolve and resequence experiments. 2022. doi:10.15479/at:ista:11388

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2022 | Thesis | IST-REx-ID: 12401 |

Tasciyan S. Role of microenvironment heterogeneity in cancer cell invasion. 2022. doi:10.15479/at:ista:12401

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2022 | Thesis | IST-REx-ID: 11193 |

Wachner S. Transcriptional regulation by Dfos and BMP-signaling support tissue invasion of Drosophila immune cells. 2022. doi:10.15479/at:ista:11193

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2022 | Thesis | IST-REx-ID: 12364 |

Dotter C. Transcriptional consequences of mutations in genes associated with Autism Spectrum Disorder. 2022. doi:10.15479/at:ista:12094

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2022 | Research Data | IST-REx-ID: 11653 |

Elkrewi MN. Data from Elkrewi, Khauratovich, Toups et al. 2022, “ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp.” 2022. doi:10.15479/AT:ISTA:11653

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2021 | Preprint | IST-REx-ID: 10080 |

Nardin M, Käfer K, Csicsvari JL. The generalized spatial representation in the prefrontal cortex is inherited from the hippocampus. bioRxiv. doi:10.1101/2021.09.30.462269

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2021 | Journal Article | IST-REx-ID: 10635 |

Nardin M, Phillips JW, Podlaski WF, Keemink SW. Nonlinear computations in spiking neural networks through multiplicative synapses. Peer Community Journal. 2021;1. doi:10.24072/pcjournal.69

[Published Version] View | Files available | DOI | arXiv

2021 | Conference Paper | IST-REx-ID: 10669 |

Grunbacher S, Hasani R, Lechner M, Cyranka J, Smolka SA, Grosu R. On the verification of neural ODEs with stochastic guarantees. In: Proceedings of the AAAI Conference on Artificial Intelligence. Vol 35. AAAI Press; 2021:11525-11535.

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2021 | Conference Paper | IST-REx-ID: 10671 |

Hasani R, Lechner M, Amini A, Rus D, Grosu R. Liquid time-constant networks. In: Proceedings of the AAAI Conference on Artificial Intelligence. Vol 35. AAAI Press; 2021:7657-7666.

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2021 | Conference Paper | IST-REx-ID: 10668 |

Babaiee Z, Hasani R, Lechner M, Rus D, Grosu R. On-off center-surround receptive fields for accurate and robust image classification. In: Proceedings of the 38th International Conference on Machine Learning. Vol 139. ML Research Press; 2021:478-489.

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2021 | Conference Paper | IST-REx-ID: 10670 |

Vorbach CJ, Hasani R, Amini A, Lechner M, Rus D. Causal navigation by continuous-time neural networks. In: 35th Conference on Neural Information Processing Systems. ; 2021.

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2021 | Conference Paper | IST-REx-ID: 10694 |

Avni G, Jecker IR, Zikelic D. Infinite-duration all-pay bidding games. In: Marx D, ed. Proceedings of the 2021 ACM-SIAM Symposium on Discrete Algorithms. Society for Industrial and Applied Mathematics; 2021:617-636. doi:10.1137/1.9781611976465.38

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2021 | Book Chapter | IST-REx-ID: 9403 |

Schmid L, Hilbe C. The evolution of strategic ignorance in strategic interaction. In: Hertwig R, Engel C, eds. Deliberate Ignorance: Choosing Not To Know. Vol 29. Strüngmann Forum Reports. MIT Press; 2021:139-152.

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2021 | Conference Paper | IST-REx-ID: 9592 |

Dvorak M, Nicholson S. Massively winning configurations in the convex grabbing game on the plane. In: Proceedings of the 33rd Canadian Conference on Computational Geometry.

[Submitted Version] View | Files available | arXiv

2021 | Conference Paper | IST-REx-ID: 9826 |

Auerbach B, Chakraborty S, Klein K, et al. Inverse-Sybil attacks in automated contact tracing. In: Topics in Cryptology – CT-RSA 2021. Vol 12704. Springer Nature; 2021:399-421. doi:10.1007/978-3-030-75539-3_17

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2021 | Conference Paper | IST-REx-ID: 11458 |

Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. AC/DC: Alternating Compressed/DeCompressed training of deep neural networks. In: 35th Conference on Neural Information Processing Systems. Vol 34. Curran Associates; 2021:8557-8570.

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2021 | Conference Paper | IST-REx-ID: 10665 |

Henzinger TA, Lechner M, Zikelic D. Scalable verification of quantized neural networks. In: Proceedings of the AAAI Conference on Artificial Intelligence. Vol 35. AAAI Press; 2021:3787-3795.

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2021 | Conference Paper | IST-REx-ID: 10667 |

Lechner M, Žikelić Ð, Chatterjee K, Henzinger TA. Infinite time horizon safety of Bayesian neural networks. In: 35th Conference on Neural Information Processing Systems. ; 2021. doi:10.48550/arXiv.2111.03165

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2021 | Technical Report | IST-REx-ID: 6995 |

Samarasinghe RA, Miranda O, Buth JE, et al. Identification of Neural Oscillations and Epileptiform Changes in Human Brain Organoids. Vol 24. Springer Nature; 2021. doi:10.1038/s41593-021-00906-5

2021 | Journal Article | IST-REx-ID: 9387 |

Khudiakova K, Neretina TY, Kondrashov AS. Two linked loci under mutation-selection balance and Muller’s ratchet. Journal of Theoretical Biology. 2021;524. doi:10.1016/j.jtbi.2021.110729

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2021 | Conference Paper | IST-REx-ID: 9356 |

Henzinger TA, Sarac NE. Quantitative and approximate monitoring. In: Proceedings of the 36th Annual ACM/IEEE Symposium on Logic in Computer Science. Institute of Electrical and Electronics Engineers; 2021. doi:10.1109/LICS52264.2021.9470547

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2021 | Journal Article | IST-REx-ID: 9558 |

Yalniz G, Hof B, Budanur NB. Coarse graining the state space of a turbulent flow using periodic orbits. Physical Review Letters. 2021;126(24). doi:10.1103/PhysRevLett.126.244502

2021 | Journal Article | IST-REx-ID: 9818 |

Sperl G, Narain R, Wojtan C. Mechanics-aware deformation of yarn pattern geometry. ACM Transactions on Graphics. 2021;40(4). doi:10.1145/3450626.3459816

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2021 | Scientific Software | IST-REx-ID: 9327 |

Sperl G, Narain R, Wojtan C. Mechanics-Aware Deformation of Yarn Pattern Geometry (Additional Animation/Model Data). 2021. doi:10.15479/AT:ISTA:9327

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2021 | Journal Article | IST-REx-ID: 9891 |

Lauritsen AB. Floating Wigner crystal and periodic jellium configurations. Journal of Mathematical Physics. 2021;62(8). doi:10.1063/5.0053494

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2021 | Journal Article | IST-REx-ID: 9903 |

Karle V, Serbyn M, Michailidis A. Area-law entangled eigenstates from nullspaces of local Hamiltonians. Physical Review Letters. 2021;127(6). doi:10.1103/physrevlett.127.060602

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2021 | Conference Paper | IST-REx-ID: 10666 |

Lechner M, Hasani R, Grosu R, Rus D, Henzinger TA. Adversarial training is not ready for robot learning. In: 2021 IEEE International Conference on Robotics and Automation. ICRA. ; 2021:4140-4147. doi:10.1109/ICRA48506.2021.9561036

2021 | Journal Article | IST-REx-ID: 9121 |

Lauritsen AB. The BCS energy gap at low density. Letters in Mathematical Physics. 2021;111. doi:10.1007/s11005-021-01358-5

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2021 | Thesis | IST-REx-ID: 9056 |

Osang GF. Multi-cover persistence and Delaunay mosaics. 2021. doi:10.15479/AT:ISTA:9056

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2021 | Thesis | IST-REx-ID: 9022 |

Cipolloni G. Fluctuations in the spectrum of random matrices. 2021. doi:10.15479/AT:ISTA:9022

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2021 | Conference Paper | IST-REx-ID: 9416 |

Phuong M, Lampert C. The inductive bias of ReLU networks on orthogonally separable data. In: 9th International Conference on Learning Representations. ; 2021.

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2021 | Thesis | IST-REx-ID: 10007 |

Hensel S. Curvature driven interface evolution: Uniqueness properties of weak solution concepts. 2021. doi:10.15479/at:ista:10007

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2021 | Journal Article | IST-REx-ID: 10191 |

Bui TL, Chatterjee K, Gautam T, Pavlogiannis A, Toman V. The reads-from equivalence for the TSO and PSO memory models. Proceedings of the ACM on Programming Languages. 2021;5(OOPSLA). doi:10.1145/3485541

[Published Version] View | Files available | DOI | arXiv

2021 | Thesis | IST-REx-ID: 10030 |

Portinale L. Discrete-to-continuum limits of transport problems and gradient flows in the space of measures. 2021. doi:10.15479/at:ista:10030

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2021 | Thesis | IST-REx-ID: 9920 |

Peruzzo M. Geometric superinductors and their applications in circuit quantum electrodynamics. 2021. doi:10.15479/at:ista:9920

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2021 | Thesis | IST-REx-ID: 10422 |

Piankov A. Towards designer materials using customizable particle shape. 2021. doi:10.15479/at:ista:10422

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2021 | Thesis | IST-REx-ID: 9418 |

Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418

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2021 | Preprint | IST-REx-ID: 14278 |

Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse. arXiv. doi:10.48550/ARXIV.2111.12171

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2021 | Thesis | IST-REx-ID: 10199 |

Toman V. Improved verification techniques for concurrent systems. 2021. doi:10.15479/at:ista:10199

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2021 | Thesis | IST-REx-ID: 10035 |

Klein K. On the adaptive security of graph-based games. 2021. doi:10.15479/at:ista:10035

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2021 | Thesis | IST-REx-ID: 10429 |

Nadiradze G. On achieving scalability through relaxation. 2021. doi:10.15479/at:ista:10429

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2021 | Journal Article | IST-REx-ID: 9760 |

Sack S, Serbyn M. Quantum annealing initialization of the quantum approximate optimization algorithm. Quantum. 2021;5. doi:10.22331/Q-2021-07-01-491

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2021 | Research Data | IST-REx-ID: 9323 |

Jirovec D. Research data for “A singlet-triplet hole spin qubit planar Ge.” 2021. doi:10.15479/AT:ISTA:9323

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2021 | Research Data | IST-REx-ID: 9389 |

Valentini M. Research data for “Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.” 2021. doi:10.15479/AT:ISTA:9389

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2021 | Research Data | IST-REx-ID: 9192 |

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2021 | Thesis | IST-REx-ID: 9733 |

Feliciangeli D. The polaron at strong coupling. 2021. doi:10.15479/at:ista:9733

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2021 | Thesis | IST-REx-ID: 9992 |

Hörmayer L. Wound healing in the Arabidopsis root meristem. 2021. doi:10.15479/at:ista:9992

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2021 | Preprint | IST-REx-ID: 10077 |

Nardin M, Csicsvari JL, Tkačik G, Savin C. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. bioRxiv. doi:10.1101/2021.09.28.460602

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2021 | Thesis | IST-REx-ID: 9623 |

Caballero Mancebo S. Fertilization-induced deformations are controlled by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes. 2021. doi:10.15479/at:ista:9623

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2021 | Thesis | IST-REx-ID: 10058 |

Jirovec D. Singlet-Triplet qubits and spin-orbit interaction in 2-dimensional Ge hole gases. 2021. doi:10.15479/at:ista:10058

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2021 | Journal Article | IST-REx-ID: 8909 |

Jirovec D, Hofmann AC, Ballabio A, et al. A singlet triplet hole spin qubit in planar Ge. Nature Materials. 2021;20(8):1106–1112. doi:10.1038/s41563-021-01022-2

2021 | Thesis | IST-REx-ID: 9397 |

Huljev K. Coordinated spatiotemporal reorganization of interstitial fluid is required for axial mesendoderm migration in zebrafish gastrulation. 2021. doi:10.15479/at:ista:9397

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2021 | Thesis | IST-REx-ID: 9562 |

Kleindienst D. 2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning. 2021. doi:10.15479/at:ista:9562

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2021 | Thesis | IST-REx-ID: 8934 |

Goharshady AK. Parameterized and algebro-geometric advances in static program analysis. 2021. doi:10.15479/AT:ISTA:8934

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2021 | Thesis | IST-REx-ID: 10307 |

Tomasek K. Pathogenic Escherichia coli hijack the host immune response. 2021. doi:10.15479/at:ista:10307

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2021 | Journal Article | IST-REx-ID: 9913 |

Vega A, Fredes I, O’Brien J, et al. Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. EMBO Reports. 2021;22(9). doi:10.15252/embr.202051813

2021 | Thesis | IST-REx-ID: 10303 |

Abualia R. Role of hormones in nitrate regulated growth. 2021. doi:10.15479/at:ista:10303

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2021 | Thesis | IST-REx-ID: 9962 |

Hansen AH. Cell-autonomous gene function and non-cell-autonomous effects in radial projection neuron migration. 2021. doi:10.15479/at:ista:9962

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2021 | Thesis | IST-REx-ID: 10083 |

Li L. Rapid cell growth regulation in Arabidopsis. 2021. doi:10.15479/at:ista:10083

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2021 | Thesis | IST-REx-ID: 10293 |

Schmid L. Evolution of cooperation via (in)direct reciprocity under imperfect information. 2021. doi:10.15479/at:ista:10293

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2021 | Journal Article | IST-REx-ID: 9997 |

Schmid L, Shati P, Hilbe C, Chatterjee K. The evolution of indirect reciprocity under action and assessment generosity. Scientific Reports. 2021;11(1). doi:10.1038/s41598-021-96932-1

2021 | Journal Article | IST-REx-ID: 9402 |

Schmid L, Chatterjee K, Hilbe C, Nowak MA. A unified framework of direct and indirect reciprocity. Nature Human Behaviour. 2021;5(10):1292–1302. doi:10.1038/s41562-021-01114-8

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