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16 Publications


2026 | Published | Journal Article | IST-REx-ID: 21384 | OA | PlanS
Modelling chemotaxis of branched cells in complex environments provides insights into immune cell navigation
J. Liu, J.E. Ron, G. Rinaldi, I. Williantarra, A. Georgantzoglou, I. de Vries, M.K. Sixt, M. Sarris, N.S. Gov, PLOS Computational Biology 22 (2026).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2025 | Published | Journal Article | IST-REx-ID: 19640 | OA
Balancing complexity, performance and plausibility to meta learn plasticity rules in recurrent spiking networks
B.J. Confavreux, E.J. Agnes, F. Zenke, H. Sprekeler, T.P. Vogels, PLoS Computational Biology 21 (2025).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2025 | Published | Journal Article | IST-REx-ID: 19702 | OA
Colonization times in Moran process on graphs
L. Kopfová, J. Tkadlec, PLoS Computational Biology 21 (2025) e1012868.
[Published Version] View | Files available | DOI | WoS | arXiv
 

2024 | Published | Journal Article | IST-REx-ID: 18481 | OA
Dynamics of morphogen source formation in a growing tissue
R.D.J.G. Ho, K. Kishi, M. Majka, A. Kicheva, M.P. Zagórski, PLoS Computational Biology 20 (2024).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2024 | Published | Journal Article | IST-REx-ID: 15169 | OA
kCSD-python, reliable current source density estimation with quality control
C. Chintaluri, M. Bejtka, W. Sredniawa, M. Czerwinski, J.M. Dzik, J. Jedrzejewska-Szmek, D.K. Wojciki, PLoS Computational Biology 20 (2024).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2024 | Published | Journal Article | IST-REx-ID: 15297 | OA
Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating
J. Svoboda, S.S. Joshi, J. Tkadlec, K. Chatterjee, PLoS Computational Biology 20 (2024).
[Published Version] View | Files available | DOI | WoS | arXiv
 

2023 | Published | Journal Article | IST-REx-ID: 12862 | OA
Uncovering the organization of neural circuits with Generalized Phase Locking Analysis
S. Safavi, T.I. Panagiotaropoulos, V. Kapoor, J.F. Ramirez Villegas, N.K. Logothetis, M. Besserve, PLoS Computational Biology 19 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Published | Journal Article | IST-REx-ID: 13230 | OA
Environmental dynamics shape perceptual decision bias
J.A. Charlton, W.F. Mlynarski, Y.H. Bai, A.M. Hermundstad, R.L.T. Goris, PLoS Computational Biology 19 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12084 | OA
Regimes and mechanisms of transient amplification in abstract and biological neural networks
G. Christodoulou, T.P. Vogels, E.J. Agnes, PLoS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12280 | OA
Direct reciprocity between individuals that use different strategy spaces
L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 10939 | OA
Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
A. Davidović, R.P. Chait, G. Batt, J. Ruess, PLoS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 10535 | OA
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC | arXiv
 

2021 | Published | Journal Article | IST-REx-ID: 9381 | OA
Mistakes can stabilise the dynamics of rock-paper-scissors games
M. Kleshnina, S.S. Streipert, J.A. Filar, K. Chatterjee, PLoS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9759 | OA
Ten simple rules to improve academic work- life balance
M.J. Bartlett, F.N. Arslan, A. Bankston, S. Sarabipour, PLoS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Published | Journal Article | IST-REx-ID: 8767 | OA
The Moran process on 2-chromatic graphs
K. Kaveh, A. McAvoy, K. Chatterjee, M.A. Nowak, PLOS Computational Biology 16 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2019 | Published | Journal Article | IST-REx-ID: 6784 | OA
Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).
[Published Version] View | Files available | DOI | WoS
 

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