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106 Publications
2025 | Published | Journal Article | IST-REx-ID: 19036 |

Layer-specific control of inhibition by NDNF interneurons
Naumann, Laura B, Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences of the United States of America 122 (4). 2025
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Naumann, Laura B, Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences of the United States of America 122 (4). 2025
2025 | Published | Journal Article | IST-REx-ID: 19499 |

Hardware-optimal quantum algorithms
Muroya Lei, Stefanie, Hardware-optimal quantum algorithms. Proceedings of the National Academy of Sciences of the United States of America 122 (12). 2025
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Muroya Lei, Stefanie, Hardware-optimal quantum algorithms. Proceedings of the National Academy of Sciences of the United States of America 122 (12). 2025
2025 | Published | Journal Article | IST-REx-ID: 19453 |

Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
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H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
2025 | Published | Journal Article | IST-REx-ID: 18850 |

Chromatin enables precise and scalable gene regulation with factors of limited specificity
Perkins, Mindy Liu, Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences of the United States of America 122 (1). 2025
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Perkins, Mindy Liu, Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences of the United States of America 122 (1). 2025
2025 | Published | Journal Article | IST-REx-ID: 18849 |

Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
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T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 122 (2025).
2024 | Published | Journal Article | IST-REx-ID: 15116 |

Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration
G. Giubertoni, L. Feng, K. Klein, G. Giannetti, L. Rutten, Y. Choi, A. Van Der Net, G. Castro-Linares, F. Caporaletti, D. Micha, J. Hunger, A. Deblais, D. Bonn, N. Sommerdijk, A. Šarić, I.M. Ilie, G.H. Koenderink, S. Woutersen, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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G. Giubertoni, L. Feng, K. Klein, G. Giannetti, L. Rutten, Y. Choi, A. Van Der Net, G. Castro-Linares, F. Caporaletti, D. Micha, J. Hunger, A. Deblais, D. Bonn, N. Sommerdijk, A. Šarić, I.M. Ilie, G.H. Koenderink, S. Woutersen, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 18938 |

Systematic analysis of nonprogrammed frameshift suppression in E.coli via translational tiling proteomics
Springstein, Benjamin L, Systematic analysis of nonprogrammed frameshift suppression in E.coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6). 2024
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Springstein, Benjamin L, Systematic analysis of nonprogrammed frameshift suppression in E.coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America 121 (6). 2024
2024 | Published | Journal Article | IST-REx-ID: 17123 |

Information content and optimization of self-organized developmental systems
Brückner, David, Information content and optimization of self-organized developmental systems. Proceedings of the National Academy of Sciences of the United States of America 121 (23). 2024
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Brückner, David, Information content and optimization of self-organized developmental systems. Proceedings of the National Academy of Sciences of the United States of America 121 (23). 2024
2024 | Published | Journal Article | IST-REx-ID: 18525 |

Quantitative omnigenic model discovers interpretable genome-wide associations
N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 14478 |

Frequent horizontal chromosome transfer between asexual fungal insect pathogens
M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 18703 |

Density amplifiers of cooperation for spatial games
J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 | Published | Journal Article | IST-REx-ID: 15084 |

GABAB receptors induce phasic release from medial habenula terminals through activity-dependent recruitment of release-ready vesicles
Koppensteiner, Peter, GABAB receptors induce phasic release from medial habenula terminals through activity-dependent recruitment of release-ready vesicles. Proceedings of the National Academy of Sciences of the United States of America 121 (8). 2024
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Koppensteiner, Peter, GABAB receptors induce phasic release from medial habenula terminals through activity-dependent recruitment of release-ready vesicles. Proceedings of the National Academy of Sciences of the United States of America 121 (8). 2024
2024 | Published | Journal Article | IST-REx-ID: 15083 |

Efficiency and resilience of cooperation in asymmetric social dilemmas
Hübner, Valentin, Efficiency and resilience of cooperation in asymmetric social dilemmas. Proceedings of the National Academy of Sciences of the United States of America 121 (10). 2024
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Hübner, Valentin, Efficiency and resilience of cooperation in asymmetric social dilemmas. Proceedings of the National Academy of Sciences of the United States of America 121 (10). 2024
2024 | Published | Journal Article | IST-REx-ID: 18526 |

Endosomal membrane budding patterns in plants
E. Weiner, E. Berryman, F.F. Frey, A.G. Solís, A. Leier, T.M. Lago, A. Šarić, M.S. Otegui, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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E. Weiner, E. Berryman, F.F. Frey, A.G. Solís, A. Leier, T.M. Lago, A. Šarić, M.S. Otegui, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2023 | Published | Journal Article | IST-REx-ID: 14666 |

Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species
Chintaluri, Chaitanya, Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species. Proceedings of the National Academy of Sciences of the United States of America 120 (48). 2023
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Chintaluri, Chaitanya, Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species. Proceedings of the National Academy of Sciences of the United States of America 120 (48). 2023
2023 | Published | Journal Article | IST-REx-ID: 18216 |

An amino-domino model described by a cross-peptide-bond Ramachandran plot defines amino acid pairs as local structural units
A.A. Rosenberg, N. Yehishalom, A. Marx, A.M. Bronstein, Proceedings of the National Academy of Sciences 120 (2023).
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A.A. Rosenberg, N. Yehishalom, A. Marx, A.M. Bronstein, Proceedings of the National Academy of Sciences 120 (2023).
2023 | Published | Journal Article | IST-REx-ID: 13201 |

The nitrate transporter NRT2.1 directly antagonizes PIN7-mediated auxin transport for root growth adaptation
Y. Wang, Z. Yuan, J. Wang, H. Xiao, L. Wan, L. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).
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Y. Wang, Z. Yuan, J. Wang, H. Xiao, L. Wan, L. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).
2022 | Published | Journal Article | IST-REx-ID: 11702 |

The "New Synthesis"
Barton, Nicholas H, The "New Synthesis". Proceedings of the National Academy of Sciences of the United States of America 119 (30). 2022
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Barton, Nicholas H, The "New Synthesis". Proceedings of the National Academy of Sciences of the United States of America 119 (30). 2022
2022 | Published | Journal Article | IST-REx-ID: 12577
Warming-induced monsoon precipitation phase change intensifies glacier mass loss in the southeastern Tibetan Plateau
A. Jouberton, T.E. Shaw, E. Miles, M. McCarthy, S. Fugger, S. Ren, A. Dehecq, W. Yang, F. Pellicciotti, PNAS 119 (2022).
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A. Jouberton, T.E. Shaw, E. Miles, M. McCarthy, S. Fugger, S. Ren, A. Dehecq, W. Yang, F. Pellicciotti, PNAS 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11723 |

RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
Li, Lanxin, RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis. Proceedings of the National Academy of Sciences of the United States of America 119 (31). 2022
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Li, Lanxin, RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis. Proceedings of the National Academy of Sciences of the United States of America 119 (31). 2022