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7090 Publications


2022 | Published | Journal Article | IST-REx-ID: 17076 | OA
Hillary, R. F., Gadd, D. A., McCartney, D. L., Shi, L., Campbell, A., Walker, R. M., … Marioni, R. E. (2022). Genome‐ and epigenome‐wide studies of plasma protein biomarkers for Alzheimer’s disease implicate TBCA and TREM2 in disease risk. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring. Wiley. https://doi.org/10.1002/dad2.12280
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 17077 | OA
Ferber, A., Kwan, M. A., Narayanan, B., Sah, A., & Sawhney, M. (2022). Friendly bisections of random graphs. Communications of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/cams/13
[Published Version] View | Files available | DOI | arXiv
 

2022 | Published | Conference Paper | IST-REx-ID: 17086 | OA
Zhang, Y., & Weinberger, N. (2022). Mean estimation in high-dimensional binary Markov Gaussian mixture models. In 36th Conference on Neural Information Processing Systems (Vol. 35). New Orleans, LA, United States: ML Research Press.
[Published Version] View | Files available | arXiv
 

2022 | Published | Conference Paper | IST-REx-ID: 17088 | OA
Kurtic, E., Campos, D., Nguyen, T., Frantar, E., Kurtz, M., Fineran, B., … Alistarh, D.-A. (2022). The optimal BERT surgeon: Scalable and accurate second-order pruning for large language models. In Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing (pp. 4163–4181). Abu Dhabi, United Arab Emirates: Association for Computational Linguistics. https://doi.org/10.18653/v1/2022.emnlp-main.279
[Published Version] View | Files available | DOI | arXiv
 

2022 | Published | Preprint | IST-REx-ID: 17115 | OA
O’Brien, R. E., Bravo, J. P. K., Ramos, D., Hibshman, G. N., Wright, J. T., & Taylor, D. W. (2022). Modes of inhibition used by phage anti-CRISPRs to evade type I-C Cascade. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.06.15.496202
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2022 | Submitted | Preprint | IST-REx-ID: 17116 | OA
Schwartz, E. A., Bravo, J. P. K., Macias, L. A., McCafferty, C. L., Dangerfield, T. L., Walker, J. N., … Taylor, D. W. (n.d.). Assembly of multi-subunit fusion proteins into the RNA-targeting type III-D CRISPR-Cas effector complex. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.06.13.496011
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2022 | Published | Preprint | IST-REx-ID: 17117 | OA
Bravo, J. P. K., Hallmark, T., Naegle, B., Beisel, C. L., Jackson, R. N., & Taylor, D. W. (2022). Large-scale structural rearrangements unleash indiscriminate nuclease activity of CRISPR-Cas12a2. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.06.13.495754
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2022 | Published | Journal Article | IST-REx-ID: 17501 | OA
Zhu, F., Sammler, M. J., Lepigre, R., Dreyer, D., & Garg, D. (2022). BFF: Foundational and automated verification of bitfield-manipulating programs. Proceedings of the ACM on Programming Languages. Association for Computing Machinery. https://doi.org/10.1145/3563345
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2022 | Published | Conference Paper | IST-REx-ID: 17502 | OA
Sammler, M. J., Hammond, A., Lepigre, R., Campbell, B., Pichon-Pharabod, J., Dreyer, D., … Sewell, P. (2022). Islaris: Verification of machine code against authoritative ISA semantics. In Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation (pp. 825–840). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3519939.3523434
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2022 | Published | Journal Article | IST-REx-ID: 17503 | OA
Lepigre, R., Sammler, M. J., Memarian, K., Krebbers, R., Dreyer, D., & Sewell, P. (2022). VIP: Verifying real-world C idioms with integer-pointer casts. Proceedings of the ACM on Programming Languages. Association for Computing Machinery. https://doi.org/10.1145/3498681
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2022 | Published | Journal Article | IST-REx-ID: 17504 | OA
Gäher, L., Sammler, M. J., Spies, S., Jung, R., Dang, H.-H., Krebbers, R., … Dreyer, D. (2022). Simuliris: A separation logic framework for verifying concurrent program optimizations. Proceedings of the ACM on Programming Languages. Association for Computing Machinery. https://doi.org/10.1145/3498689
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2022 | Published | Journal Article | IST-REx-ID: 17526 | OA
Davelaar, J., & Haiman, Z. (2022). Self-lensing flares from black hole binaries: General-relativistic ray tracing of black hole binaries. Physical Review D. American Physical Society (APS). https://doi.org/10.1103/physrevd.105.103010
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2022 | Published | Journal Article | IST-REx-ID: 17536 | OA
Samsing, J., Bartos, I., D’Orazio, D. J., Haiman, Z., Kocsis, B., Leigh, N. W. C., … Tagawa, H. (2022). AGN as potential factories for eccentric black hole mergers. Nature. Springer Science and Business Media LLC. https://doi.org/10.1038/s41586-021-04333-1
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 17547 | OA
Davelaar, J., & Haiman, Z. (2022). Self-Lensing flares from black hole binaries: Observing black hole shadows via light curve tomography. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.128.191101
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 17553 | OA
Tiede, C., Zrake, J., MacFadyen, A., & Haiman, Z. (2022). How binaries accrete: Hydrodynamic simulations with passive tracer particles. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ac6c2b
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2022 | Published | Journal Article | IST-REx-ID: 17560 | OA
Hu, H., Inayoshi, K., Haiman, Z., Li, W., Quataert, E., & Kuiper, R. (2022). Supercritical growth pathway to overmassive black holes at cosmic dawn: Coevolution with massive quasar hosts. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ac7daa
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2022 | Published | Journal Article | IST-REx-ID: 17561 | OA
Yang, Y., Bartos, I., Fragione, G., Haiman, Z., Kowalski, M., Márka, S., … Tagawa, H. (2022). Tidal disruption on stellar-mass black holes in active galactic nuclei. The Astrophysical Journal Letters. American Astronomical Society. https://doi.org/10.3847/2041-8213/ac7c0b
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2022 | Published | Journal Article | IST-REx-ID: 17562 | OA
Lu, T., Haiman, Z., & Zorrilla Matilla, J. M. (2022). Simultaneously constraining cosmology and baryonic physics via deep learning from weak lensing. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stac161
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2022 | Published | Journal Article | IST-REx-ID: 17563 | OA
Sabyr, A., Haiman, Z., Matilla, J. M. Z., & Lu, T. (2022). Cosmological constraints from weak lensing peaks: Can halo models accurately predict peak counts? Physical Review D. American Physical Society. https://doi.org/10.1103/physrevd.105.023505
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2022 | Published | Journal Article | IST-REx-ID: 17568 | OA
Tagawa, H., Kimura, S. S., Haiman, Z., Perna, R., Tanaka, H., & Bartos, I. (2022). Can stellar-mass black hole growth disrupt disks of active galactic nuclei? The role of mechanical feedback. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ac45f8
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2022 | Published | Journal Article | IST-REx-ID: 17571 | OA
Scoggins, M. T., Haiman, Z., & Wise, J. H. (2022). How long do high redshift massive black hole seeds remain outliers in black hole versus host galaxy relations? Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stac3715
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2022 | Published | Journal Article | IST-REx-ID: 17572 | OA
D’Orazio, D. J., Haiman, Z., Levin, J., Samsing, J., & Vigna-Gómez, A. (2022). Multimessenger constraints on magnetic fields in merging black hole–neutron star binaries. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ac4bdb
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2022 | Published | Journal Article | IST-REx-ID: 17576 | OA
Gurvits LI, Paragi Z, Amils RI, van Bemmel I, Boven P, Casasola V, Conway J, Davelaar J, Díez-González MC, Falcke H, Fender R, Frey S, Fromm CM, Gallego-Puyol JD, García-Miró C, Garrett MA, Giroletti M, Goddi C, Gómez JL, van der Gucht J, Guirado JC, Haiman Z, Helmich F, Hudson B, Humphreys E, Impellizzeri V, Janssen M, Johnson MD, Kovalev YY, Kramer M, Lindqvist M, Linz H, Liuzzo E, Lobanov AP, López-Fernández I, Malo-Gómez I, Masania K, Mizuno Y, Plavin AV, Rajan RT, Rezzolla L, Roelofs F, Ros E, Rygl KLJ, Savolainen T, Schuster K, Venturi T, Verkouter M, de Vicente P, Visser PNAM, Wiedner MC, Wielgus M, Wiik K, Zensus JA. 2022. The science case and challenges of space-borne sub-millimeter interferometry. Acta Astronautica. 196, 314–333.
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2022 | Published | Journal Article | IST-REx-ID: 17580 | OA
De Rosa, A., Vignali, C., Severgnini, P., Bianchi, S., Bogdanović, T., Charisi, M., … Serafinelli, R. (2022). The X-ray view of optically selected dual AGN. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stac3664
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2022 | Published | Journal Article | IST-REx-ID: 17582 | OA
Westernacher-Schneider, J. R., Zrake, J., MacFadyen, A., & Haiman, Z. (2022). Multiband light curves from eccentric accreting supermassive black hole binaries. Physical Review D. American Physical Society. https://doi.org/10.1103/physrevd.106.103010
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 17588 | OA
Toyouchi, D., Inayoshi, K., Li, W., Haiman, Z., & Kuiper, R. (2022). Radiative feedback on supermassive star formation: the massive end of the population III initial mass function. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stac3191
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2022 | Published | Journal Article | IST-REx-ID: 17599 | OA
Lee, M. E., Lu, T., Haiman, Z., Liu, J., & Osato, K. (2022). Comparing weak lensing peak counts in baryonic correction models to hydrodynamical simulations. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stac3592
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 17608 | OA
Hu, H., Inayoshi, K., Haiman, Z., Quataert, E., & Kuiper, R. (2022). Long-term evolution of supercritical black hole accretion with outflows: A subgrid feedback model for cosmological simulations. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/ac75d8
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2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß, J. L., Pilsl, M., Straub, K., Bleckmann, A., Höcherl, M., Heiss, F. B., … Engel, C. (2022). The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans. Life Science Alliance. Life Science Alliance. https://doi.org/10.26508/lsa.202201568
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 12054 | OA
Yang, Z., Xia, J., Hong, J., Zhang, C., Wei, H., Ying, W., … Sun, L. (2022). Structural insights into auxin recognition and efflux by Arabidopsis PIN1. Nature. Springer Nature. https://doi.org/10.1038/s41586-022-05143-9
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12067 | OA
Madani, A., Anghileri, L., Heydenreich, M., Möller, H. M., & Pieber, B. (2022). Benzylic fluorination induced by a charge-transfer complex with a solvent-dependent selectivity switch. Organic Letters. American Chemical Society. https://doi.org/10.1021/acs.orglett.2c02050
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2022 | Published | Journal Article | IST-REx-ID: 12085 | OA
Mulla, Y., Avellaneda Sarrió, M., Roland, A., Baldauf, L., Jung, W., Kim, T., … Koenderink, G. H. (2022). Weak catch bonds make strong networks. Nature Materials. Springer Nature. https://doi.org/10.1038/s41563-022-01288-0
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2022 | Published | Journal Article | IST-REx-ID: 12107 | OA
Roca, R., De Meyer, V., & Muller, C. J. (2022). Precipitating fraction, not intensity, explains extreme coarse-grained precipitation Clausius-Clapeyron scaling with sea surface temperature over tropical oceans. Geophysical Research Letters. Wiley. https://doi.org/10.1029/2022GL100624
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 12111 | OA
Stocker, L., Sack, S., Ferguson, M. S., & Zilberberg, O. (2022). Entanglement-based observables for quantum impurities. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.4.043177
[Published Version] View | Files available | DOI
 

2022 | Published | Journal Article | IST-REx-ID: 12121 | OA
Zhao, J., Bui, M. T., Ma, J., Künzl, F., Picchianti, L., De La Concepcion, J. C., … Dagdas, Y. (2022). Plant autophagosomes mature into amphisomes prior to their delivery to the central vacuole. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.202203139
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12128 | OA
Poelking, C., Faber, F. A., & Cheng, B. (2022). BenchML: An extensible pipelining framework for benchmarking representations of materials and molecules at scale. Machine Learning: Science and Technology. IOP Publishing. https://doi.org/10.1088/2632-2153/ac4d11
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 12130 | OA
Huang, J., Zhao, L., Malik, S., Gentile, B. R., Xiong, V., Arazi, T., … Zhao, D. (2022). Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-022-34723-6
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12131 | OA
Byazrova, M. G., Astakhova, E. A., Minnegalieva, A., Sukhova, M. M., Mikhailov, A. A., Prilipov, A. G., … Filatov, A. V. (2022). Anti-Ad26 humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination. Npj Vaccines. Springer Nature. https://doi.org/10.1038/s41541-022-00566-x
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12134 | OA
Börner, G., Schröder, M., Scarselli, D., Budanur, N. B., Hof, B., & Timme, M. (2022). Explosive transitions in epidemic dynamics. Journal of Physics: Complexity. IOP Publishing. https://doi.org/10.1088/2632-072x/ac99cd
[Published Version] View | Files available | DOI
 

2022 | Published | Journal Article | IST-REx-ID: 12137 | OA
Wang, B., Ayats López, R., Deguchi, K., Mellibovsky, F., & Meseguer, A. (2022). Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. Journal of Fluid Mechanics. Cambridge University Press. https://doi.org/10.1017/jfm.2022.828
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2022 | Published | Journal Article | IST-REx-ID: 12139 | OA
Ghazaryan, A., Kirmani, A., Fernandes, R. M., & Ghaemi, P. (2022). Anomalous Shiba states in topological iron-based superconductors. Physical Review B. American Physical Society. https://doi.org/10.1103/physrevb.106.l201107
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 12140 | OA
Basilico, B., Ferrucci, L., Khan, A., Di Angelantonio, S., Ragozzino, D., & Reverte, I. (2022). What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior. Frontiers in Cellular Neuroscience. Frontiers Media. https://doi.org/10.3389/fncel.2022.1022431
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2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12146 | OA
Wang, B., Ayats López, R., Meseguer, A., & Marques, F. (2022). Phase-locking flows between orthogonally stretching parallel plates. Physics of Fluids. AIP Publishing. https://doi.org/10.1063/5.0124152
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 12151 | OA
Cooley, O., Kang, M., & Pikhurko, O. (2022). On a question of Vera T. Sós about size forcing of graphons. Acta Mathematica Hungarica. Springer Nature. https://doi.org/10.1007/s10474-022-01265-8
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 12154 | OA
Salasnich, L., Cappellaro, A., Furutani, K., Tononi, A., & Bighin, G. (2022). First and second sound in two-dimensional bosonic and fermionic superfluids. Symmetry. MDPI. https://doi.org/10.3390/sym14102182
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 12157 | OA
Hayward, L., & Sella, G. (2022). Polygenic adaptation after a sudden change in environment. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.66697
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Conference Paper | IST-REx-ID: 12161 | OA
Tomaszewska, P., & Lampert, C. (2022). Lightweight conditional model extrapolation for streaming data under class-prior shift. In 26th International Conference on Pattern Recognition (Vol. 2022, pp. 2128–2134). Montreal, Canada: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/icpr56361.2022.9956195
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2022 | Published | Conference Paper | IST-REx-ID: 12167 | OA
Avarikioti, G., Pietrzak, K. Z., Salem, I., Schmid, S., Tiwari, S., & Yeo, M. X. (2022). Hide & Seek: Privacy-preserving rebalancing on payment channel networks. In Financial Cryptography and Data Security (Vol. 13411, pp. 358–373). Grenada: Springer Nature. https://doi.org/10.1007/978-3-031-18283-9_17
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Published | Journal Article | IST-REx-ID: 12179 | OA
Cipolloni, G., Erdös, L., & Schröder, D. J. (2022). On the condition number of the shifted real Ginibre ensemble. SIAM Journal on Matrix Analysis and Applications. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/21m1424408
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

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