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5783 Publications


2013 | Conference Paper | IST-REx-ID: 2819 | OA
Quantitative timed simulation functions and refinement metrics for real-time systems
K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.
[Preprint] View | DOI | Download Preprint (ext.)
 

2013 | Journal Article | IST-REx-ID: 2818 | OA
Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2826 | OA
Mutations in SCO2 are associated with autosomal-dominant high-grade myopia
K. Tran Viet, C. Powell, V. Barathi, T. Klemm, S. Maurer Stroh, V. Limviphuvadh, V. Soler, C. Ho, T. Yanovitch, G. Schneider, Y. Li, E. Nading, R. Metlapally, S. Saw, L. Goh, S. Rozen, T. Young, American Journal of Human Genetics 92 (2013) 820–826.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2822 | OA
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2821 | OA
A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2827 | OA
Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2832 | OA
Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana
H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2828 | OA
The complexity of conservative valued CSPs
V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2829 | OA
Scale invariance at the onset of turbulence in couette flow
L. Shi, M. Avila, B. Hof, Physical Review Letters 110 (2013).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2834 | OA
Streamwise-localized solutions at the onset of turbulence in pipe flow
M. Avila, F. Mellibovsky, N. Roland, B. Hof, Physical Review Letters 110 (2013).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2842 | OA
Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
[Submitted Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2838 | OA
Dyrk1A is dynamically expressed on subsets of motor neurons and in the neuromuscular junction: Possible role in Down syndrome
G. Arquè Fuste, A. Casanovas, M. Dierssen, PLoS One 8 (2013).
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2839 | OA
Interstitial dendritic cell guidance by haptotactic chemokine gradients
M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. de Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
[Published Version] View | DOI | Download Published Version (ext.)
 

2013 | Journal Article | IST-REx-ID: 2837 | OA
The local semicircle law for a general class of random matrices
L. Erdös, A. Knowles, H. Yau, J. Yin, Electronic Journal of Probability 18 (2013) 1–58.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2835 | OA
Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis
H. Yu, M. Karampelias, S. Robert, W. Peer, R. Swarup, S. Ye, L. Ge, J. Cohen, A. Murphy, J. Friml, M. Estelle, Plant Physiology 162 (2013) 965–976.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2836 | OA
Assume-guarantee synthesis for digital contract signing
K. Chatterjee, V. Raman, Formal Aspects of Computing 26 (2013) 825–859.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2846 | OA
Sex differences in host defence interfere with parasite-mediated selection for outcrossing during host-parasite coevolution
L. El Masri, R. Schulte, N. Timmermeyer, S. Thanisch, L. Crummenerl, G. Jansen, N. Michiels, H. Schulenburg, Ecology Letters 16 (2013) 461–468.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2854 | OA
Strategy improvement for concurrent reachability and turn based stochastic safety games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2850 | OA
The simplest maximum entropy model for collective behavior in a neural network
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2857 | OA
Optical control of ligand-gated ion channels
S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
[Submitted Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2860 | OA
Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2855 | OA
Mosaic analysis with double markers reveals cell type specific paternal growth dominance
S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2856 | OA
Optical control of metabotropic glutamate receptors
J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2859 | OA
Homology and robustness of level and interlevel sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2863 | OA
Stimulus-dependent maximum entropy models of neural population codes
E. Granot Atedgi, G. Tkačik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2862 | OA
Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle
H. Tay, S. Schulze, J. Compagnon, F. Foley, C.-P.J. Heisenberg, H.J. Yost, S. Abdelilah Seyfried, J. Amack, Development 140 (2013) 1550–1559.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2883 | OA
Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane
B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M. Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2880 | OA
Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2882 | OA
Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism
C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2881 | OA
Cytokinin signaling regulates pavement cell morphogenesis in Arabidopsis
H. Li, T. Xu, D. Lin, M. Wen, M. Xie, J. Duclercq, A. Bielach, J. Kim, G.V. Reddy, J. Zuo, E. Benková, J. Friml, H. Guo, Z. Yang, Cell Research 23 (2013) 290–299.
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2013 | Conference Paper | IST-REx-ID: 2886 | OA
Controllable-choice message sequence graphs
M. Chmelik, V. Řehák, 7721 (2013) 118–130.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 

2013 | Journal Article | IST-REx-ID: 2887 | OA
Genotypic recognition and spatial responses by rice roots
S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2013 | Conference Paper | IST-REx-ID: 2901 | OA
Computing the M most probable modes of a graphical model
C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.
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2013 | Conference Paper | IST-REx-ID: 2906 | OA
3D kinetic alpha complexes and their implementation
M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
[Submitted Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2910 | OA
Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
[Published Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2909 | OA
Modelling evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
[Submitted Version] View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2908 | OA
Does hybridisation influence speciation?
N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.
[Submitted Version] View | Files available | DOI
 

2013 | Book Chapter | IST-REx-ID: 2907 | OA
Recombination and sex
N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.
[Submitted Version] View | Files available
 

2013 | Journal Article | IST-REx-ID: 2913 | OA
Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkačik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
[Preprint] View | DOI | Download Preprint (ext.)
 

2013 | Journal Article | IST-REx-ID: 2919 | OA
SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism
P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2920 | OA
Neurulation coordinating cell polarisation and lumen formation
J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Conference Paper | IST-REx-ID: 2940 | OA
A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it
S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
[Submitted Version] View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2948 | OA
Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
[Submitted Version] View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2973 | OA
Bringing Zero-Knowledge Proofs of Knowledge to Practice
E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, J. Tsay, in:, B. Christianson, J. Malcolm, V. Matyas, M. Roe (Eds.), Springer, 2013, pp. 51–62.
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2013 | Journal Article | IST-REx-ID: 2815 | OA
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2013 | Journal Article | IST-REx-ID: 344 | OA
Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals
M. Ibáñez, D. Cadavid, U. Anselmi Tamburini, R. Zamani, S. Gorsse, W. Li, A. López, J. Morante, J. Arbiol, A. Cabot, Journal of Materials Chemistry A 1 (2013) 1421–1426.
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2013 | Journal Article | IST-REx-ID: 3261 | OA
Positional information, in bits
J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2831 | OA
Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 450 | OA
Source population characteristics affect heterosis following genetic rescue of fragmented plant populations
M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 476 | OA
Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions
D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).
[Published Version] View | Files available | DOI
 

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