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8027 Publications
2010 | Journal Article | IST-REx-ID: 3735
G. Tkačik, J. Prentice, J. Victor, and V. Balasubramanian, “Local statistics in natural scenes predict the saliency of synthetic textures,” PNAS, vol. 107, no. 42. National Academy of Sciences, pp. 18149–18154, 2010.
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2010 | Journal Article | IST-REx-ID: 3736
G. Tkačik, J. Prentice, V. Balasubramanian, and E. Schneidman, “Optimal population coding by noisy spiking neurons,” PNAS, vol. 107, no. 32. National Academy of Sciences, pp. 14419–14424, 2010.
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2010 | Journal Article | IST-REx-ID: 3738
A. Walczak, G. Tkačik, and W. Bialek, “Optimizing information flow in small genetic networks. II. Feed-forward interactions,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 81, no. 4. American Institute of Physics, 2010.
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2010 | Journal Article | IST-REx-ID: 3748 |

H. Park, W. Pontius, C. C. Guet, J. Marko, T. Emonet, and P. Cluzel, “Interdependence of behavioural variability and response to small stimuli in bacteria,” Nature, vol. 468. Nature Publishing Group, pp. 819–823, 2010.
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2010 | Journal Article | IST-REx-ID: 3749 |

H. Park, C. C. Guet, T. Emonet, and P. Cluzel, “Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay,” Current Microbiology, vol. 62, no. 3. Springer, pp. 764–769, 2010.
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2010 | Book Chapter | IST-REx-ID: 3795 |

H. Edelsbrunner, D. Morozov, and A. Patel, “The stability of the apparent contour of an orientable 2-manifold,” in Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Conference Paper | IST-REx-ID: 3794
C. Lampert and O. Krömer, “Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning,” presented at the ECCV: European Conference on Computer Vision, Heraklion, Crete, Greece, 2010, vol. 6312, pp. 566–579.
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2010 | Journal Article | IST-REx-ID: 3831 |

A. Norenberg, H. Hu, I. Vida, M. Bartos, and P. M. Jonas, “Distinct nonuniform cable properties optimize rapid and efficient activation of fast-spiking GABAergic interneurons,” PNAS, vol. 107, no. 2. National Academy of Sciences, pp. 894–9, 2010.
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2010 | Journal Article | IST-REx-ID: 3832 |

J. Guzmán and P. M. Jonas, “Beyond TARPs: The growing list of auxiliary AMPAR subunits,” Neuron, vol. 66, no. 1. Elsevier, pp. 8–10, 2010.
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2010 | Journal Article | IST-REx-ID: 3833
P. M. Jonas and S. Hefft, “GABA release at terminals of CCK-interneurons: synchrony, asynchrony and modulation by cannabinoid receptors (commentary on Ali & Todorova),” The European Journal of Neuroscience, vol. 31, no. 7. Wiley-Blackwell, pp. 1194–1195, 2010.
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2010 | Conference Paper | IST-REx-ID: 3847 |

F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “SABRE: A tool for the stochastic analysis of biochemical reaction networks,” presented at the QEST: Quantitative Evaluation of Systems, Williamsburg, USA, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3845 |

T. A. Henzinger, T. Hottelier, L. Kovács, and A. Rybalchenko, “Aligators for arrays,” presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia, 2010, vol. 6397, pp. 348–356.
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2010 | Journal Article | IST-REx-ID: 3842 |

F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “Fast adaptive uniformization of the chemical master equation,” IET Systems Biology, vol. 4, no. 6. Institution of Engineering and Technology, pp. 441–452, 2010.
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2010 | Conference Paper | IST-REx-ID: 3858 |

K. Chatterjee and L. Doyen, “The complexity of partial-observation parity games,” presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia, 2010, vol. 6397, pp. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3856 |

K. Chatterjee, L. Doyen, H. Gimbert, and T. A. Henzinger, “Randomness for free,” presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic, 2010, vol. 6281, pp. 246–257.
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2010 | Conference (Editor) | IST-REx-ID: 3859
K. Chatterjee and T. A. Henzinger, Eds., Formal modeling and analysis of timed systems, vol. 6246. Springer, 2010.
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2010 | Conference Paper | IST-REx-ID: 3866 |

R. Bloem, K. Chatterjee, K. Greimel, T. A. Henzinger, and B. Jobstmann, “Robustness in the presence of liveness,” presented at the CAV: Computer Aided Verification, Edinburgh, UK, 2010, vol. 6174, pp. 410–424.
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2010 | Journal Article | IST-REx-ID: 3868 |

K. Chatterjee, L. De Alfaro, R. Majumdar, and V. Raman, “Algorithms for game metrics,” Logical Methods in Computer Science, vol. 6, no. 3. International Federation of Computational Logic, pp. 1–27, 2010.
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2010 | Book | IST-REx-ID: 3899
H. Edelsbrunner and J. Harer, Computational Topology: An Introduction, vol. 69. American Mathematical Society, 2010.
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2010 | Journal Article | IST-REx-ID: 3960 |

M. Weber and M. K. Sixt, “MEK signalling tunes actin treadmilling for interstitial lymphocyte migration,” EMBO Journal, vol. 29, no. 17. Wiley-Blackwell, pp. 2861–2863, 2010.
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2010 | Thesis | IST-REx-ID: 3962
H. Pflicke, “ Dendritic cell migration across basement membranes in the skin,” IST Austria, 2010.
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2010 | Journal Article | IST-REx-ID: 4243 |

N. H. Barton, A. Etheridge, and A. Véber, “A new model for evolution in a spatial continuum,” Electronic Journal of Probability, vol. 15, no. 7. Institute of Mathematical Statistics, pp. 162–216, 2010.
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2010 | Other Publication | IST-REx-ID: 4340 |

P. Danowski, Open bibliographic data. Elsevier, 2010.
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2010 | Book (Editor) | IST-REx-ID: 4346 |

P. Danowski and J. Bergmann, Eds., Handbuch Bibliothek 2.0, vol. 41. De Gruyter, 2010.
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2010 | Conference Paper | IST-REx-ID: 4341
P. Danowski, “Step one: blow up the silo! - Open bibliographic data, the first step towards Linked Open Data,” presented at the WLIC: World Library and Information Congress, 2010.
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2010 | Conference Paper | IST-REx-ID: 4369 |

D. Nickovic and N. Piterman, “From MTL to deterministic timed automata,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg, Austria, 2010, vol. 6246, pp. 152–167.
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2010 | Journal Article | IST-REx-ID: 3070
T. Nawy, M. Bayer, J. Mravec, J. Friml, K. Birnbaum, and W. Lukowitz, “The GATA factor HANABA TARANU is required to position the proembryo boundary in the early Arabidopsis embryo,” Developmental Cell, vol. 19, no. 1. Cell Press, pp. 103–113, 2010.
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2010 | Journal Article | IST-REx-ID: 3153
D. E. Siekhaus, M. Haesemeyer, O. Moffitt, and R. Lehmann, “RhoL controls invasion and Rap1 localization during immune cell transmigration in Drosophila,” Nature Cell Biology, vol. 12, no. 6. Nature Publishing Group, pp. 605–610, 2010.
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2010 | Conference Paper | IST-REx-ID: 3201
S. Vicente, V. Kolmogorov, and C. Rother, “Cosegmentation revisited: Models and optimization,” presented at the ECCV: European Conference on Computer Vision, 2010, vol. 6312, pp. 465–479.
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2010 | Conference Paper | IST-REx-ID: 2934
V. Kolmogorov, “Generalized roof duality and bisubmodular functions,” presented at the Neural Information Processing Systems, 2010.
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2010 | Thesis | IST-REx-ID: 3296
C. Wojtan, “Animating physical phenomena with embedded surface meshes,” Georgia Institute of Technology, 2010.
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2010 | Journal Article | IST-REx-ID: 3306 |

S. Evans, B. Sturmfels, and C. Uhler, “Commuting birth and death processes,” The Annals of Applied Probability, vol. 20. Institute of Mathematical Statistics, pp. 238–266, 2010.
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2010 | Journal Article | IST-REx-ID: 3308 |

B. Sturmfels and C. Uhler, “Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry,” Annals of the Institute of Statistical Mathematics, vol. 62, no. 4. Springer, pp. 603–638, 2010.
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2010 | Journal Article | IST-REx-ID: 3402
R. Guerraoui, T. A. Henzinger, and V. Singh, “Model checking transactional memories,” Distributed Computing, vol. 22, no. 3. Springer, pp. 129–145, 2010.
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2010 | Conference Paper | IST-REx-ID: 3430 |

G. Tkačik, “Lecture notes for 2010 summer school on Quantitative Evolutionary and Comparative Genomics,” presented at the Summer School on Quantitative Evolutionary and Comparative Genomics, 2010.
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2010 | Journal Article | IST-REx-ID: 3498
M. Sabeti Aschraf, C. Gonano, E. Nemecek, L. Cichocki, and C. Schueller Weidekamm, “Intra-operative ultrasound facilitates the localization of the calcific deposit during arthroscopic treatment of calcifying tendinitis,” Knee Surgery, Sports Traumatology, Arthroscopy, vol. 18, no. 12. Springer, pp. 1792–1794, 2010.
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2010 | Conference Paper | IST-REx-ID: 3676
J. Wanke, A. Ulges, C. Lampert, and T. Breuel, “Topic models for semantic video compression,” presented at the MIR: Multimedia Information Retrieval, 2010, pp. 275–284.
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2010 | Preprint | IST-REx-ID: 3743 |

G. Tkačik, “From statistical mechanics to information theory: understanding biophysical information-processing systems,” ArXiv, vol. q-MN. ArXiv, pp. 1–52, 2010.
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2010 | Journal Article | IST-REx-ID: 3759
C. Wojtan, N. Thürey, M. Gross, and G. Turk, “Physics-inspired topology changes for thin fluid features,” ACM Transactions on Graphics, vol. 29, no. 4. ACM, 2010.
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2010 | Journal Article | IST-REx-ID: 3776 |

N. H. Barton, “Genetic linkage and natural selection,” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 365, no. 1552. Royal Society, pp. 2559–2569, 2010.
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2010 | Journal Article | IST-REx-ID: 3773 |

N. H. Barton, “What role does natural selection play in speciation?,” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 365, no. 1547. Royal Society, pp. 1825–1840, 2010.
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| PubMed | Europe PMC
2010 | Journal Article | IST-REx-ID: 3777 |

N. H. Barton, “Mutation and the evolution of recombination,” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 365, no. 1544. Royal Society, pp. 1281–1294, 2010.
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2010 | Journal Article | IST-REx-ID: 3774
H. Senn, G. Swanson, S. Goodman, N. H. Barton, and J. Pemberton, “Phenotypic correlates of hybridisation between red and sika deer (genus Cervus),” Journal of Animal Ecology, vol. 79, no. 2. Wiley-Blackwell, pp. 414–425, 2010.
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2010 | Journal Article | IST-REx-ID: 3772 |

N. H. Barton, “Understanding adaptation in large populations,” PLoS Genetics, vol. 6, no. 6. Public Library of Science, 2010.
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2010 | Journal Article | IST-REx-ID: 3790 |

A. Diz Muñoz et al., “Control of directed cell migration in vivo by membrane-to-cortex attachment,” PLoS Biology, vol. 8, no. 11. Public Library of Science, 2010.
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2010 | Conference Paper | IST-REx-ID: 3793 |

S. Nowozin, P. Gehler, and C. Lampert, “On parameter learning in CRF-based approaches to object class image segmentation,” presented at the ECCV: European Conference on Computer Vision, Heraklion, Crete, Greece, 2010, vol. 6316, pp. 98–111.
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2010 | Journal Article | IST-REx-ID: 3787 |

F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, and S. Thatje, “DNA extraction from formalin-fixed tissue: new light from the deep sea,” Scientia Marina, vol. 74, no. 3. Consejo Superior de Investigaciones Científicas, pp. 465–470, 2010.
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2010 | Journal Article | IST-REx-ID: 3834 |

V. Wolf, R. Goel, M. Mateescu, and T. A. Henzinger, “Solving the chemical master equation using sliding windows,” BMC Systems Biology, vol. 4, no. 42. BioMed Central, pp. 1–19, 2010.
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2010 | Conference Paper | IST-REx-ID: 3839 |

T. A. Henzinger, T. Hottelier, L. Kovács, and A. Voronkov, “Invariant and type inference for matrices,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Madrid, Spain, 2010, vol. 5944, pp. 163–179.
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2010 | Conference Paper | IST-REx-ID: 3838 |

T. A. Henzinger, M. Mateescu, L. Mikeev, and V. Wolf, “Hybrid numerical solution of the chemical master equation,” presented at the CMSB: Computational Methods in Systems Biology, Trento, Italy, 2010, pp. 55–65.
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2010 | Conference Paper | IST-REx-ID: 3853 |

K. Chatterjee, L. Doyen, H. Edelsbrunner, T. A. Henzinger, and P. Rannou, “Mean-payoff automaton expressions,” presented at the CONCUR: Concurrency Theory, Paris, France, 2010, vol. 6269, pp. 269–283.
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2010 | Conference Paper | IST-REx-ID: 3852 |

K. Chatterjee and R. Majumdar, “Discounting in games across time scales,” presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy, 2010, vol. 25, pp. 22–29.
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| arXiv
2010 | Conference Paper | IST-REx-ID: 3849 |

P. Bendich, H. Edelsbrunner, M. Kerber, and A. Patel, “Persistent homology under non-uniform error,” presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic, 2010, vol. 6281, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 |

K. Chatterjee and L. Doyen, “Energy parity games,” presented at the ICALP: Automata, Languages and Programming, 37th International Colloquium, Bordeaux, France, 2010, vol. 6199, pp. 599–610.
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| arXiv
2010 | Journal Article | IST-REx-ID: 385 |

Z. Alpichshev et al., “STM imaging of electronic waves on the surface of Bi2Te3 Topologically protected surface states and hexagonal warping effects,” Physical Review Letters, vol. 104, no. 1. American Physical Society, 2010.
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2010 | Conference Paper | IST-REx-ID: 3850
E. Berberich, D. Halperin, M. Kerber, and R. Pogalnikova, “Polygonal reconstruction from approximate offsets,” presented at the EuroCG: European Workshop on Computational Geometry, Dortmund, Germany, 2010, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3860 |

K. Chatterjee, L. Doyen, T. A. Henzinger, and J. Raskin, “Generalized mean-payoff and energy games,” presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Chennai, India, 2010, vol. 8, pp. 505–516.
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2010 | Journal Article | IST-REx-ID: 3862 |

K. Chatterjee, L. Doyen, and T. A. Henzinger, “Quantitative languages,” ACM Transactions on Computational Logic (TOCL), vol. 11, no. 4. ACM, 2010.
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