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5762 Publications
2022 | Published | Journal Article | IST-REx-ID: 11734 |

Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses
R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry, A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry, A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12081 |

Accumulation and maintenance of information in evolution
M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 10841 |

Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
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D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
2022 | Published | Journal Article | IST-REx-ID: 10927 |

PaReBrick: PArallel REarrangements and BReaks identification toolkit
A. Zabelkin, Y. Yakovleva, O. Bochkareva, N. Alexeev, Bioinformatics 38 (2022) 357–363.
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A. Zabelkin, Y. Yakovleva, O. Bochkareva, N. Alexeev, Bioinformatics 38 (2022) 357–363.
2022 | Published | Journal Article | IST-REx-ID: 10889 |

Electron microscopic visualization of single molecules by tag-mediated metal particle labeling
R. Shigemoto, Microscopy 71 (2022) i72–i80.
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R. Shigemoto, Microscopy 71 (2022) i72–i80.
2022 | Published | Journal Article | IST-REx-ID: 10926 |

Very short mountings are enough for sperm transfer in Littorina saxatilis
S. Perini, R. Butlin, A.M. Westram, K. Johannesson, Journal of Molluscan Studies 88 (2022).
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S. Perini, R. Butlin, A.M. Westram, K. Johannesson, Journal of Molluscan Studies 88 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12684 |

Effective equidistribution of lattice points in positive characteristic
T. Horesh, F. Paulin, Journal de Theorie Des Nombres de Bordeaux 34 (2022) 679–703.
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T. Horesh, F. Paulin, Journal de Theorie Des Nombres de Bordeaux 34 (2022) 679–703.
2022 | Published | Journal Article | IST-REx-ID: 10016 |

Fourteen stations of auxin
J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
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J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
2022 | Published | Conference Paper | IST-REx-ID: 12537 |

Memorization and optimization in deep neural networks with minimum over-parameterization
S. Bombari, M.H. Amani, M. Mondelli, in:, 36th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2022, pp. 7628–7640.
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S. Bombari, M.H. Amani, M. Mondelli, in:, 36th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2022, pp. 7628–7640.
2022 | Published | Journal Article | IST-REx-ID: 11135 |

On the operator norm of a Hermitian random matrix with correlated entries
J. Reker, Random Matrices: Theory and Applications 11 (2022).
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J. Reker, Random Matrices: Theory and Applications 11 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11723 |

RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 10888 |

Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling
Q. Lu, Y. Zhang, J. Hellner, C. Giannini, X. Xu, J. Pauwels, Q. Ma, W. Dejonghe, H. Han, B. Van De Cotte, F. Impens, K. Gevaert, I. De Smet, J. Friml, D.M. Molina, E. Russinova, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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Q. Lu, Y. Zhang, J. Hellner, C. Giannini, X. Xu, J. Pauwels, Q. Ma, W. Dejonghe, H. Han, B. Van De Cotte, F. Impens, K. Gevaert, I. De Smet, J. Friml, D.M. Molina, E. Russinova, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11702 |

The "New Synthesis"
N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 10717 |

Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots
R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).
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R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).
2022 | Published | Thesis | IST-REx-ID: 11777 |

High-dimensional expansion and crossing numbers of simplicial complexes
P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology Austria, 2022.
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P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology Austria, 2022.
2022 | Published | Journal Article | IST-REx-ID: 11998 |

A simple model for high rotational excitations of molecules in a superfluid
I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, H. Stapelfeldt, M. Lemeshko, New Journal of Physics 24 (2022).
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I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, H. Stapelfeldt, M. Lemeshko, New Journal of Physics 24 (2022).
2022 | Published | Book Chapter | IST-REx-ID: 17085 |

Mosses: Accessible Systems for Plant Development Studies
J. Floriach-Clark, H. Tang, V. Willemsen, in:, I.Y. Abdurakhmonov (Ed.), Model Organisms in Plant Genetics, IntechOpen, 2022.
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J. Floriach-Clark, H. Tang, V. Willemsen, in:, I.Y. Abdurakhmonov (Ed.), Model Organisms in Plant Genetics, IntechOpen, 2022.
2022 | Published | Journal Article | IST-REx-ID: 12291 |

ABP1–TMK auxin perception for global phosphorylation and auxin canalization
Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
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Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
2022 | Published | Journal Article | IST-REx-ID: 11739 |

Evolutionary $\Gamma$-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions
D.L. Forkert, J. Maas, L. Portinale, SIAM Journal on Mathematical Analysis 54 (2022) 4297–4333.
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D.L. Forkert, J. Maas, L. Portinale, SIAM Journal on Mathematical Analysis 54 (2022) 4297–4333.
2022 | Research Data Reference | IST-REx-ID: 14520 |

Compact vacuum gap transmon qubits: Selective and sensitive probes for superconductor surface losses
M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, (2022).
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M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, (2022).