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9113 Publications


2009 | Preprint | IST-REx-ID: 3732 | OA
G. Tkačik, E. Schneidman, M. Berry, and W. Bialek, “Spin glass models for a network of real neurons,” ArXiv, vol. q-NC. ArXiv, 2009.
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2009 | Book Chapter | IST-REx-ID: 3747
G. Tkačik and W. Bialek, “Cell Biology: Networks, regulation, pathways,” in Encyclopedia of Complexity and Systems Science, R. Meyers, Ed. Springer, 2009, pp. 719–741.
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2009 | Journal Article | IST-REx-ID: 3764
C. Wojtan, N. Thürey, M. Gross, and G. Turk, “Deforming meshes that split and merge,” ACM Transactions on Graphics, vol. 28, no. 3. ACM, 2009.
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2009 | Journal Article | IST-REx-ID: 3768
A. Kupczok and A. Von Haeseler, “Comment on ‘{A} congruence index for testing topological similarity between trees’.,” Bioinformatics, vol. 25, no. 1. Oxford University Press, pp. 147–149, 2009.
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2009 | Journal Article | IST-REx-ID: 3780 | OA
A. Davison, N. H. Barton, and B. Clarke, “The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails,” Journal of Evolutionary Biology, vol. 22, no. 8. Wiley, pp. 1624–1635, 2009.
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2009 | Journal Article | IST-REx-ID: 3828
J. Schwenk et al., “Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors,” Science, vol. 323, no. 5919. American Association for the Advancement of Science, pp. 1313–9, 2009.
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “Fast adaptive uniformization of the chemical master equation,” presented at the HIBI: High-Performance Computational Systems Biology, Trento, Italy, 2009, vol. 4, no. 6, pp. 118–127.
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2009 | Conference Paper | IST-REx-ID: 3841 | OA
T. A. Henzinger, B. Jobstmann, and V. Wolf, “Formalisms for specifying Markovian population models,” presented at the RP: Reachability Problems, Palaiseau, France, 2009, vol. 5797, pp. 3–23.
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2009 | Conference Paper | IST-REx-ID: 3844 | OA
T. A. Henzinger, C. Kirsch, E. Marques, and A. Sokolova, “Distributed, modular HTL,” presented at the RTSS: Real-Time Systems Symposium, Washington, DC, United States, 2009, pp. 171–180.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3871 | OA
K. Chatterjee, L. Doyen, and T. A. Henzinger, “Probabilistic weighted automata,” presented at the CONCUR: Concurrency Theory, Bologna, Italy, 2009, vol. 5710, pp. 244–258.
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2009 | Journal Article | IST-REx-ID: 3870 | OA
K. Chatterjee, T. A. Henzinger, and F. Horn, “Finitary winning in omega-regular games,” ACM Transactions on Computational Logic (TOCL), vol. 11, no. 1. ACM, 2009.
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2009 | Journal Article | IST-REx-ID: 3869
K. Chatterjee, L. De Alfaro, M. Faella, and A. Legay, “Qualitative logics and equivalences for probabilistic systems,” Logical Methods in Computer Science, vol. 5, no. 2. International Federation of Computational Logic, 2009.
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2009 | Journal Article | IST-REx-ID: 3946 | OA
S. Cremer and M. K. Sixt, “Analogies in the evolution of individual and social immunity,” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 364, no. 1513. Royal Society, The, pp. 129–142, 2009.
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2009 | Journal Article | IST-REx-ID: 3947
T. Lämmermann, J. Renkawitz, X. Wu, K. Hirsch, C. Brakebusch, and M. K. Sixt, “Cdc42-dependent leading edge coordination is essential for interstitial dendritic cell migration (Plenary Paper),” Blood, vol. 113, no. 23. American Society of Hematology, pp. 5703–5710, 2009.
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2009 | Journal Article | IST-REx-ID: 3948
M. Bauer et al., “β1 integrins differentially control extravasation of inflammatory cell subsets into the CNS during autoimmunity,” PNAS, vol. 106, no. 6. National Academy of Sciences, pp. 1920–1925, 2009.
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2009 | Journal Article | IST-REx-ID: 3949
T. Quast et al., “Cytohesin-1 controls the activation of RhoA and modulates integrin-dependent adhesion and migration of dendritic cells,” Blood, vol. 113, no. 23. American Society of Hematology, pp. 5801–5810, 2009.
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2009 | Journal Article | IST-REx-ID: 4136 | OA
J. Polechova, N. H. Barton, and G. Marion, “Species’ range: Adaptation in space and time,” American Naturalist, vol. 174, no. 5. University of Chicago Press, pp. E186–E204, 2009.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2009 | Journal Article | IST-REx-ID: 4149
G. Soete and C.-P. J. Heisenberg, “The role of the extracellular matrix in Kupffer’s vesicle formation in zebrafish,” Mechanisms of Development, vol. 126. Elsevier, pp. S168–S168, 2009.
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2009 | Journal Article | IST-REx-ID: 4165
A. Oates, N. Gorfinkiel, M. Gonzalez Gaitan, and C.-P. J. Heisenberg, “Quantitative approaches in developmental biology,” Nature Reviews Genetics, vol. 10, no. 8. Nature Publishing Group, pp. 517–530, 2009.
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2009 | Journal Article | IST-REx-ID: 4192
M. Kai, N. Buchan, C.-P. J. Heisenberg, and M. Tada, “Regulation of planar cell polarity signalling by the prenylation pathway,” Mechanisms of Development, vol. 126, no. Supplement 1. Elsevier, pp. S132–S132, 2009.
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2009 | Journal Article | IST-REx-ID: 4223
J. Swoboda et al., “Discovery of a Small Molecule that Blocks Wall Teichoic Acid Biosynthesis in Staphylococcus aureus,” ACS Chemical Biology, vol. 4, no. 10. American Chemical Society, pp. 875–883, 2009.
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2009 | Journal Article | IST-REx-ID: 4228
T. Bollenbach, S. Quan, R. P. Chait, and R. Kishony, “Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions,” Cell, vol. 139, no. 4. Cell Press, pp. 707–718, 2009.
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2009 | Journal Article | IST-REx-ID: 4242 | OA
N. H. Barton and M. De Cara, “The evolution of strong reproductive isolation,” Evolution; International Journal of Organic Evolution, vol. 63, no. 5. Wiley, pp. 1171–1190, 2009.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 4365
M. Seghir, A. Podelski, and T. Wies, “Abstraction Refinement for Quantified Array Assertions,” presented at the SAS: Static Analysis Symposium, 2009, pp. 3–18.
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2009 | Journal Article | IST-REx-ID: 3047
B. Titapiwatanakun et al., “ABCB19 PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis,” Plant Journal, vol. 57, no. 1. Wiley-Blackwell, pp. 27–44, 2009.
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2009 | Journal Article | IST-REx-ID: 3049
M. Pernisová et al., “Cytokinins modulate auxin induced organogenesis in plants via regulation of the auxin efflux,” PNAS, vol. 106, no. 9. National Academy of Sciences, pp. 3609–3614, 2009.
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2009 | Journal Article | IST-REx-ID: 3050
K. Růžička et al., “Cytokinin regulates root meristem activity via modulation of the polar auxin transport,” PNAS, vol. 106, no. 11. National Academy of Sciences, pp. 4284–4289, 2009.
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2009 | Journal Article | IST-REx-ID: 3048
H. Tanaka, S. Kitakura, R. De Rycke, R. De Groodt, and J. Friml, “Fluorescence imaging based screen identifies ARF GEF component of early endosomal trafficking,” Current Biology, vol. 19, no. 5. Cell Press, pp. 391–397, 2009.
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2009 | Journal Article | IST-REx-ID: 3054
H. Robert and J. Friml, “Auxin and other signals on the move in plants,” Nature Chemical Biology, vol. 5, no. 5. Nature Publishing Group, pp. 325–332, 2009.
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2009 | Journal Article | IST-REx-ID: 3052 | OA
S. Vanneste and J. Friml, “Auxin: A trigger for change in plant development,” Cell, vol. 136, no. 6. Cell Press, pp. 1005–1016, 2009.
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2009 | Journal Article | IST-REx-ID: 3051 | OA
D. Weijers and J. Friml, “SnapShot: Auxin signaling and transport,” Cell, vol. 136, no. 6. Cell Press, pp. 1172–1172, 2009.
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2009 | Journal Article | IST-REx-ID: 3053
E. Benková, M. Ivanchenko, J. Friml, S. Shishkova, and J. Dubrovsky, “A morphogenetic trigger: Is there an emerging concept in plant developmental biology?,” Trends in Plant Science, vol. 14, no. 4. Cell Press, pp. 189–193, 2009.
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2009 | Journal Article | IST-REx-ID: 3197 | OA
M. P. Kumar, V. Kolmogorov, and P. Torr, “An analysis of convex relaxations for MAP estimation of discrete MRFs,” Journal of Machine Learning Research, vol. 10. Microtome Publishing, pp. 71–106, 2009.
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2009 | Conference Paper | IST-REx-ID: 3199
S. Vicente, V. Kolmogorov, and C. Rother, “Joint optimization of segmentation and appearance models,” presented at the ICCV: International Conference on Computer Vision, 2009, pp. 755–762.
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2009 | Journal Article | IST-REx-ID: 3200
V. Kolmogorov and A. Shioura, “New algorithms for convex cost tension problem with application to computer vision,” Discrete Optimization, vol. 6, no. 4. Elsevier, pp. 378–393, 2009.
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2009 | Journal Article | IST-REx-ID: 3292
J. Engel, P. S. Schmalhorst, T. Dörk Bousset, V. Ferrières, and F. Routier, “A single UDP galactofuranose transporter is required for galactofuranosylation in Aspergillus fumigatus,” Journal of Biological Chemistry, vol. 284, no. 49. American Society for Biochemistry and Molecular Biology, pp. 33859–33868, 2009.
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2009 | Journal Article | IST-REx-ID: 3293
S. Chakraborty Tuhin, S. Goswami, and O. Siddiqi, “Sensory correlates of imaginal conditioning in Drosophila melanogaster,” Journal of Neurogenetics, vol. 23, no. 1–2. Informa Healthcare, pp. 210–9, 2009.
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2009 | Journal Article | IST-REx-ID: 3309
C. Uhler, “Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard,” Journal of Agricultural Biological and Environmental Statistics, vol. 14, no. 1. Springer, pp. 79–98, 2009.
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2009 | Thesis | IST-REx-ID: 3400
P. S. Schmalhorst, “Biosynthesis of Galactofuranose Containing Glycans and Their Relevance for the Pathogenic Fungus Aspergillus fumigatus,” Gottfried Wilhelm Leibniz Universität Hannover, 2009.
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2009 | Journal Article | IST-REx-ID: 3398
M. T. Bollenbach and R. Kishony, “Quiet gene circuit more fragile than its noisy peer,” Cell, vol. 139, no. 3. Cell Press, pp. 460–461, 2009.
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2009 | Journal Article | IST-REx-ID: 3547
S. Remy, J. L. Csicsvari, and H. Beck, “Activity-dependent control of neuronal output by local and global dendritic spike attenuation,” Neuron, vol. 61, no. 6. Elsevier, pp. 906–916, 2009.
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2009 | Book Chapter | IST-REx-ID: 3578
D. Attali, J. Boissonnat, and H. Edelsbrunner, “Stability and computation of medial axes: a state-of-the-art report,” in Mathematical Foundations of Scientific Visualization, Computer Graphics, and Massive Data Exploration, Springer, 2009, pp. 109–125.
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2009 | Book Chapter | IST-REx-ID: 3675
N. H. Barton, “Why sex and recombination? ,” in Cold Spring Harbor Symposia on Quantitative Biology, vol. 74, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
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2009 | Journal Article | IST-REx-ID: 3696
C. Lampert and M. Blaschko, “Structured prediction by joint kernel support estimation,” Machine Learning, vol. 77, no. 2–3. Springer, pp. 249–269, 2009.
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2009 | Conference Paper | IST-REx-ID: 3690
P. Dhillon, S. Nowozin, and C. Lampert, “Combining appearance and motion for human action classification in videos,” presented at the CVPR: Computer Vision and Pattern Recognition, 2009, no. 174, pp. 22–29.
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2009 | Journal Article | IST-REx-ID: 3710
C. Lampert, M. Blaschko, and T. Hofmann, “Efficient subwindow search: A branch and bound framework for object localization,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 31, no. 12. IEEE, pp. 2129–2142, 2009.
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2009 | Conference Paper | IST-REx-ID: 3711
P. Dhillon, S. Nowozin, and C. Lampert, “Combining appearance and motion for human action classification in videos,” presented at the CVPR: Computer Vision and Pattern Recognition, 2009, pp. 22–29.
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2009 | Book | IST-REx-ID: 3707
C. Lampert, Kernel Methods in Computer Vision, vol. 4. now publishers, 2009.
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2009 | Conference Paper | IST-REx-ID: 3708
S. Nowozin and C. Lampert, “Global connectivity potentials for random field models,” presented at the CVPR: Computer Vision and Pattern Recognition, 2009, pp. 818–825.
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2009 | Conference Paper | IST-REx-ID: 3709
C. Lampert, “Detecting objects in large image collections and videos by efficient subimage retrieval,” presented at the ICCV: International Conference on Computer Vision, 2009, pp. 987–994.
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