Anđela Šarić

Saric Group

65 Publications

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[65]
2024 | Journal Article | IST-REx-ID: 15001 | OA
Curk, S., Krausser, J., Meisl, G., Frenkel, D., Linse, S., Michaels, T. C. T., … Šarić, A. (2024). Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2220075121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[64]
2024 | Journal Article | IST-REx-ID: 15116 | OA
Giubertoni, G., Feng, L., Klein, K., Giannetti, G., Rutten, L., Choi, Y., … Woutersen, S. (2024). Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2313162121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[63]
2023 | Journal Article | IST-REx-ID: 12708 | OA
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
[Published Version] View | Files available | DOI | WoS | arXiv
 
[62]
2023 | Journal Article | IST-REx-ID: 12756 | OA
Hurtig, F., Burgers, T. C. Q., Cezanne, A., Jiang, X., Mol, F. N., Traparić, J., … Baum, B. (2023). The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.ade5224
[Published Version] View | Files available | DOI | WoS
 
[61]
2023 | Journal Article | IST-REx-ID: 13094 | OA
Azadbakht, A., Meadowcroft, B., Varkevisser, T., Šarić, A., & Kraft, D. J. (2023). Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.3c00375
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[60]
2023 | Journal Article | IST-REx-ID: 13237
Michaels, T. C. T., Qian, D., Šarić, A., Vendruscolo, M., Linse, S., & Knowles, T. P. J. (2023). Amyloid formation as a protein phase transition. Nature Reviews Physics. Springer Nature. https://doi.org/10.1038/s42254-023-00598-9
View | DOI | WoS
 
[59]
2023 | Journal Article | IST-REx-ID: 14610 | OA
Bussi, C., Mangiarotti, A., Vanhille-Campos, C. E., Aylan, B., Pellegrino, E., Athanasiadi, N., … Gutierrez, M. G. (2023). Stress granules plug and stabilize damaged endolysosomal membranes. Nature. Springer Nature. https://doi.org/10.1038/s41586-023-06726-w
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[58]
2023 | Research Data | IST-REx-ID: 14472 | OA
Vanhille-Campos, C. E., & Šarić, A. (2023). Stress granules plug and stabilize damaged endolysosomal membranes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14472
[Published Version] View | Files available | DOI
 
[57]
2023 | Journal Article | IST-REx-ID: 14844 | OA
Azadbakht, A., Meadowcroft, B., Majek, J., Šarić, A., & Kraft, D. J. (n.d.). Nonadditivity in interactions between three membrane-wrapped colloidal spheres. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2023.12.020
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[56]
2023 | Journal Article | IST-REx-ID: 13971 | OA
Grober, D., Palaia, I., Ucar, M. C., Hannezo, E. B., Šarić, A., & Palacci, J. A. (2023). Unconventional colloidal aggregation in chiral bacterial baths. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-023-02136-x
[Published Version] View | Files available | DOI | WoS
 
[55]
2022 | Journal Article | IST-REx-ID: 12108 | OA
Meadowcroft, B., Palaia, I., Pfitzner, A. K., Roux, A., Baum, B., & Šarić, A. (2022). Mechanochemical rules for shape-shifting filaments that remodel membranes. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.129.268101
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[54]
2022 | Journal Article | IST-REx-ID: 12152 | OA
Jiang, X., Harker-Kirschneck, L., Vanhille-Campos, C. E., Pfitzner, A.-K., Lominadze, E., Roux, A., … Šarić, A. (2022). Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. PLOS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1010586
[Published Version] View | Files available | DOI | WoS
 
[53]
2022 | Journal Article | IST-REx-ID: 12251 | OA
Weiffert, T., Meisl, G., Curk, S., Cukalevski, R., Šarić, A., Knowles, T. P. J., & Linse, S. (2022). Influence of denaturants on amyloid β42 aggregation kinetics. Frontiers in Neuroscience. Frontiers Media. https://doi.org/10.3389/fnins.2022.943355
[Published Version] View | Files available | DOI | WoS
 
[52]
2022 | Journal Article | IST-REx-ID: 11400 | OA
Palaia, I., & Šarić, A. (2022). Controlling cluster size in 2D phase-separating binary mixtures with specific interactions. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0087769
[Published Version] View | Files available | DOI | WoS
 
[51]
2022 | Journal Article | IST-REx-ID: 11841 | OA
Toprakcioglu, Z., Kamada, A., Michaels, T. C. T., Xie, M., Krausser, J., Wei, J., … Knowles, T. P. J. (2022). Adsorption free energy predicts amyloid protein nucleation rates. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2109718119
[Published Version] View | Files available | DOI | WoS
 
[50]
2021 | Journal Article | IST-REx-ID: 10124 | OA
Palaia, I., Paraschiv, A., Debets, V., Storm, C., & Šarić, A. (2021). Durotaxis of passive nanoparticles on elastic membranes. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.1c02777
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[49]
2021 | Preprint | IST-REx-ID: 10125 | OA
Harker-Kirschneck, L., Hafner, A. E., Yao, T., Pulschen, A., Hurtig, F., Vanhille-Campos, C., … Šarić, A. (n.d.). Physical mechanisms of ESCRT-III-driven cell division in archaea. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.03.23.436559
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[48]
2021 | Journal Article | IST-REx-ID: 10340 | OA
Paraschiv, A., Lagny, T. J., Campos, C. V., Coudrier, E., Bassereau, P., & Šarić, A. (2021). Influence of membrane-cortex linkers on the extrusion of membrane tubes. Biophysical Journal. Cell Press. https://doi.org/10.1016/j.bpj.2020.12.028
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[47]
2021 | Journal Article | IST-REx-ID: 10338 | OA
Davis, L. K., Šarić, A., Hoogenboom, B. W., & Zilman, A. (2021). Physical modeling of multivalent interactions in the nuclear pore complex. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2021.01.039
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[46]
2021 | Journal Article | IST-REx-ID: 10337
Zeng, L., Palaia, I., Šarić, A., & Su, X. (2021). PLCγ1 promotes phase separation of T cell signaling components. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.202009154
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[45]
2021 | Journal Article | IST-REx-ID: 10339 | OA
Vanhille-Campos, C., & Šarić, A. (2021). Modelling the dynamics of vesicle reshaping and scission under osmotic shocks. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/d0sm02012e
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[44]
2020 | Journal Article | IST-REx-ID: 10336 | OA
Krausser, J., Knowles, T. P. J., & Šarić, A. (2020). Physical mechanisms of amyloid nucleation on fluid membranes. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2007694117
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[43]
2020 | Journal Article | IST-REx-ID: 10342 | OA
Tian, X., Leite, D. M., Scarpa, E., Nyberg, S., Fullstone, G., Forth, J., … Battaglia, G. (2020). On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.abc4397
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[42]
2020 | Journal Article | IST-REx-ID: 10344 | OA
Forster, J. C., Krausser, J., Vuyyuru, M. R., Baum, B., & Šarić, A. (2020). Exploring the design rules for efficient membrane-reshaping nanostructures. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.125.228101
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[41]
2020 | Journal Article | IST-REx-ID: 10341 | OA
Debets, V. E., Janssen, L. M. C., & Šarić, A. (2020). Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/d0sm00712a
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[40]
2020 | Journal Article | IST-REx-ID: 10346 | OA
Hafner, A. E., Gyori, N. G., Bench, C. A., Davis, L. K., & Šarić, A. (2020). Modeling fibrillogenesis of collagen-mimetic molecules. Biophysical Journal. Cell Press. https://doi.org/10.1016/j.bpj.2020.09.013
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[39]
2020 | Journal Article | IST-REx-ID: 10350 | OA
Dear, A. J., Meisl, G., Šarić, A., Michaels, T. C. T., Kjaergaard, M., Linse, S., & Knowles, T. P. J. (2020). Identification of on- and off-pathway oligomers in amyloid fibril formation. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c9sc06501f
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[38]
2020 | Journal Article | IST-REx-ID: 10349 | OA
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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[37]
2020 | Journal Article | IST-REx-ID: 10347 | OA
Michaels, T. C. T., Šarić, A., Meisl, G., Heller, G. T., Curk, S., Arosio, P., … Knowles, T. P. J. (2020). Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2006684117
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[36]
2020 | Journal Article | IST-REx-ID: 10351 | OA
Michaels, T. C. T., Šarić, A., Curk, S., Bernfur, K., Arosio, P., Meisl, G., … Knowles, T. P. J. (2020). Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-020-0452-1
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[35]
2020 | Journal Article | IST-REx-ID: 10348 | OA
Pfitzner, A.-K., Mercier, V., Jiang, X., Moser von Filseck, J., Baum, B., Šarić, A., & Roux, A. (2020). An ESCRT-III polymerization sequence drives membrane deformation and fission. Cell. Elsevier. https://doi.org/10.1016/j.cell.2020.07.021
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[34]
2020 | Journal Article | IST-REx-ID: 10352 | OA
Davis, L. K., Ford, I. J., Šarić, A., & Hoogenboom, B. W. (2020). Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics. Physical Review E. American Physical Society. https://doi.org/10.1103/physreve.101.022420
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[33]
2020 | Journal Article | IST-REx-ID: 10353 | OA
Paraschiv, A., Hegde, S., Ganti, R., Pilizota, T., & Šarić, A. (2020). Dynamic clustering regulates activity of mechanosensitive membrane channels. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.124.048102
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[32]
2019 | Journal Article | IST-REx-ID: 10354 | OA
Harker-Kirschneck, L., Baum, B., & Šarić, A. (2019). Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico. BMC Biology. Springer Nature. https://doi.org/10.1186/s12915-019-0700-2
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[31]
2019 | Journal Article | IST-REx-ID: 10355 | OA
Hafner, A. E., Krausser, J., & Šarić, A. (2019). Minimal coarse-grained models for molecular self-organisation in biology. Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2019.05.018
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[30]
2018 | Journal Article | IST-REx-ID: 10362
Fisher, P. D. E., Shen, Q., Akpinar, B., Davis, L. K., Chung, K. K. H., Baddeley, D., … Lusk, C. P. (2018). A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.7b08044
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[29]
2018 | Journal Article | IST-REx-ID: 10360
Cohen, S. I. A., Cukalevski, R., Michaels, T. C. T., Šarić, A., Törnquist, M., Vendruscolo, M., … Linse, S. (2018). Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-018-0023-x
View | DOI | PubMed | Europe PMC
 
[28]
2018 | Journal Article | IST-REx-ID: 10357
Dear, A. J., Šarić, A., Michaels, T. C. T., Dobson, C. M., & Knowles, T. P. J. (2018). Statistical mechanics of globular oligomer formation by protein molecules. The Journal of Physical Chemistry B. American Chemical Society. https://doi.org/10.1021/acs.jpcb.8b07805
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[27]
2018 | Journal Article | IST-REx-ID: 10359 | OA
Curk, T., Wirnsberger, P., Dobnikar, J., Frenkel, D., & Šarić, A. (2018). Controlling cargo trafficking in multicomponent membranes. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.8b00786
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[26]
2018 | Journal Article | IST-REx-ID: 10358 | OA
Michaels, T. C. T., Liu, L. X., Curk, S., Bolhuis, P. G., Šarić, A., & Knowles, T. P. J. (2018). Reaction rate theory for supramolecular kinetics: application to protein aggregation. Molecular Physics. Taylor & Francis. https://doi.org/10.1080/00268976.2018.1474280
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[25]
2018 | Journal Article | IST-REx-ID: 10361
Michaels, T. C. T., Šarić, A., Habchi, J., Chia, S., Meisl, G., Vendruscolo, M., … Knowles, T. P. J. (2018). Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation. Annual Review of Physical Chemistry. Annual Reviews. https://doi.org/10.1146/annurev-physchem-050317-021322
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[24]
2017 | Journal Article | IST-REx-ID: 10126 | OA
Vahid Belarghou, A., Šarić, A., & Idema, T. (2017). Curvature mediated interactions in highly curved membranes. Biophysical Journal. Elsevier . https://doi.org/10.1016/j.bpj.2016.11.2123
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[23]
2017 | Journal Article | IST-REx-ID: 10370 | OA
Helle, S. C. J., Feng, Q., Aebersold, M. J., Hirt, L., Grüter, R. R., Vahid, A., … Kornmann, B. (2017). Mechanical force induces mitochondrial fission. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.30292
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[22]
2017 | Journal Article | IST-REx-ID: 10369 | OA
Simunovic, M., Šarić, A., Henderson, J. M., Lee, K. Y. C., & Voth, G. A. (2017). Long-range organization of membrane-curving proteins. ACS Central Science. American Chemical Society. https://doi.org/10.1021/acscentsci.7b00392
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[21]
2017 | Journal Article | IST-REx-ID: 10373 | OA
Wirnsberger, P., Fijan, D., Lightwood, R. A., Šarić, A., Dellago, C., & Frenkel, D. (2017). Numerical evidence for thermally induced monopoles. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1621494114
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[20]
2017 | Journal Article | IST-REx-ID: 10374 | OA
Meisl, G., Rajah, L., Cohen, S. A. I., Pfammatter, M., Šarić, A., Hellstrand, E., … Knowles, T. P. J. (2017). Scaling behaviour and rate-determining steps in filamentous self-assembly. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c7sc01965c
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[19]
2017 | Journal Article | IST-REx-ID: 10375 | OA
Vahid, A., Šarić, A., & Idema, T. (2017). Curvature variation controls particle aggregation on fluid vesicles. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c7sm00433h
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[18]
2016 | Journal Article | IST-REx-ID: 10377 | OA
van der Wel, C., Vahid, A., Šarić, A., Idema, T., Heinrich, D., & Kraft, D. J. (2016). Lipid membrane-mediated attraction between curvature inducing objects. Scientific Reports. Springer Nature. https://doi.org/10.1038/srep32825
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[17]
2016 | Journal Article | IST-REx-ID: 10376 | OA
Šarić, A., Michaels, T. C. T., Zaccone, A., Knowles, T. P. J., & Frenkel, D. (2016). Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation. The Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/1.4965040
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[16]
2016 | Journal Article | IST-REx-ID: 10380 | OA
Wirnsberger, P., Fijan, D., Šarić, A., Neumann, M., Dellago, C., & Frenkel, D. (2016). Non-equilibrium simulations of thermally induced electric fields in water. The Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/1.4953036
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[15]
2016 | Journal Article | IST-REx-ID: 10381 | OA
Bachmann, S. J., Kotar, J., Parolini, L., Šarić, A., Cicuta, P., Di Michele, L., & Mognetti, B. M. (2016). Melting transition in lipid vesicles functionalised by mobile DNA linkers. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c6sm01515h
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[14]
2016 | Journal Article | IST-REx-ID: 10378 | OA
Šarić, A., Buell, A. K., Meisl, G., Michaels, T. C. T., Dobson, C. M., Linse, S., … Frenkel, D. (2016). Physical determinants of the self-replication of protein fibrils. Nature Physics. Springer Nature. https://doi.org/10.1038/nphys3828
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[13]
2014 | Journal Article | IST-REx-ID: 10382 | OA
Šarić, A., Chebaro, Y. C., Knowles, T. P. J., & Frenkel, D. (2014). Crucial role of nonspecific interactions in amyloid nucleation. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1410159111
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[12]
2014 | Journal Article | IST-REx-ID: 10383 | OA
Mallory, S. A., Šarić, A., Valeriani, C., & Cacciuto, A. (2014). Anomalous thermomechanical properties of a self-propelled colloidal fluid. Physical Review E. American Physical Society. https://doi.org/10.1103/physreve.89.052303
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[11]
2013 | Journal Article | IST-REx-ID: 10384 | OA
Mognetti, B. M., Šarić, A., Angioletti-Uberti, S., Cacciuto, A., Valeriani, C., & Frenkel, D. (2013). Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.111.245702
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[10]
2013 | Journal Article | IST-REx-ID: 10386
Šarić, A., & Cacciuto, A. (2013). Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm50188d
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[9]
2013 | Journal Article | IST-REx-ID: 10385
Napoli, J. A., Šarić, A., & Cacciuto, A. (2013). Collapsing nanoparticle-laden nanotubes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm51495a
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[8]
2012 | Journal Article | IST-REx-ID: 10387 | OA
Šarić, A., & Cacciuto, A. (2012). Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.109.188101
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[7]
2012 | Journal Article | IST-REx-ID: 10388 | OA
Šarić, A., & Cacciuto, A. (2012). Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.108.118101
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[6]
2011 | Journal Article | IST-REx-ID: 10389 | OA
Šarić, A., & Cacciuto, A. (2011). Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c1sm05773a
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[5]
2010 | Journal Article | IST-REx-ID: 10128
Šarić, A., Hrenar, T., Mališ, M., & Došlić, N. (2010). Quantum mechanical study of secondary structure formation in protected dipeptides. Physical Chemistry Chemical Physics. Royal Society of Chemistry . https://doi.org/10.1039/b923041f
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[4]
2010 | Journal Article | IST-REx-ID: 10127 | OA
Šarić, A., & Cacciuto, A. (2010). Particle self-assembly on soft elastic shells. Soft Matter. Royal Society of Chemistry (RSC). https://doi.org/10.1039/c0sm01143f
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[3]
2010 | Journal Article | IST-REx-ID: 10390 | OA
Šarić, A., Bozorgui, B., & Cacciuto, A. (2010). Packing of soft asymmetric dumbbells. The Journal of Physical Chemistry B. American Chemical Society. https://doi.org/10.1021/jp107545w
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[2]
2010 | Journal Article | IST-REx-ID: 10391 | OA
Šarić, A., Pàmies, J. C., & Cacciuto, A. (2010). Effective elasticity of a flexible filament bound to a deformable cylindrical surface. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.104.226101
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[1]
2008 | Journal Article | IST-REx-ID: 10392
Šarić, A., Vrček, V., & Bühl, M. (2008). Density functional study of protonated formylmetallocenes. Organometallics. American Chemical Society. https://doi.org/10.1021/om700916f
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[65]
2024 | Journal Article | IST-REx-ID: 15001 | OA
Curk, S., Krausser, J., Meisl, G., Frenkel, D., Linse, S., Michaels, T. C. T., … Šarić, A. (2024). Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2220075121
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[64]
2024 | Journal Article | IST-REx-ID: 15116 | OA
Giubertoni, G., Feng, L., Klein, K., Giannetti, G., Rutten, L., Choi, Y., … Woutersen, S. (2024). Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2313162121
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[63]
2023 | Journal Article | IST-REx-ID: 12708 | OA
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
[Published Version] View | Files available | DOI | WoS | arXiv
 
[62]
2023 | Journal Article | IST-REx-ID: 12756 | OA
Hurtig, F., Burgers, T. C. Q., Cezanne, A., Jiang, X., Mol, F. N., Traparić, J., … Baum, B. (2023). The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.ade5224
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[61]
2023 | Journal Article | IST-REx-ID: 13094 | OA
Azadbakht, A., Meadowcroft, B., Varkevisser, T., Šarić, A., & Kraft, D. J. (2023). Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.3c00375
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[60]
2023 | Journal Article | IST-REx-ID: 13237
Michaels, T. C. T., Qian, D., Šarić, A., Vendruscolo, M., Linse, S., & Knowles, T. P. J. (2023). Amyloid formation as a protein phase transition. Nature Reviews Physics. Springer Nature. https://doi.org/10.1038/s42254-023-00598-9
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[59]
2023 | Journal Article | IST-REx-ID: 14610 | OA
Bussi, C., Mangiarotti, A., Vanhille-Campos, C. E., Aylan, B., Pellegrino, E., Athanasiadi, N., … Gutierrez, M. G. (2023). Stress granules plug and stabilize damaged endolysosomal membranes. Nature. Springer Nature. https://doi.org/10.1038/s41586-023-06726-w
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[58]
2023 | Research Data | IST-REx-ID: 14472 | OA
Vanhille-Campos, C. E., & Šarić, A. (2023). Stress granules plug and stabilize damaged endolysosomal membranes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14472
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[57]
2023 | Journal Article | IST-REx-ID: 14844 | OA
Azadbakht, A., Meadowcroft, B., Majek, J., Šarić, A., & Kraft, D. J. (n.d.). Nonadditivity in interactions between three membrane-wrapped colloidal spheres. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2023.12.020
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[56]
2023 | Journal Article | IST-REx-ID: 13971 | OA
Grober, D., Palaia, I., Ucar, M. C., Hannezo, E. B., Šarić, A., & Palacci, J. A. (2023). Unconventional colloidal aggregation in chiral bacterial baths. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-023-02136-x
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[55]
2022 | Journal Article | IST-REx-ID: 12108 | OA
Meadowcroft, B., Palaia, I., Pfitzner, A. K., Roux, A., Baum, B., & Šarić, A. (2022). Mechanochemical rules for shape-shifting filaments that remodel membranes. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.129.268101
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[54]
2022 | Journal Article | IST-REx-ID: 12152 | OA
Jiang, X., Harker-Kirschneck, L., Vanhille-Campos, C. E., Pfitzner, A.-K., Lominadze, E., Roux, A., … Šarić, A. (2022). Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. PLOS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1010586
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[53]
2022 | Journal Article | IST-REx-ID: 12251 | OA
Weiffert, T., Meisl, G., Curk, S., Cukalevski, R., Šarić, A., Knowles, T. P. J., & Linse, S. (2022). Influence of denaturants on amyloid β42 aggregation kinetics. Frontiers in Neuroscience. Frontiers Media. https://doi.org/10.3389/fnins.2022.943355
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[52]
2022 | Journal Article | IST-REx-ID: 11400 | OA
Palaia, I., & Šarić, A. (2022). Controlling cluster size in 2D phase-separating binary mixtures with specific interactions. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0087769
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[51]
2022 | Journal Article | IST-REx-ID: 11841 | OA
Toprakcioglu, Z., Kamada, A., Michaels, T. C. T., Xie, M., Krausser, J., Wei, J., … Knowles, T. P. J. (2022). Adsorption free energy predicts amyloid protein nucleation rates. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2109718119
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[50]
2021 | Journal Article | IST-REx-ID: 10124 | OA
Palaia, I., Paraschiv, A., Debets, V., Storm, C., & Šarić, A. (2021). Durotaxis of passive nanoparticles on elastic membranes. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.1c02777
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[49]
2021 | Preprint | IST-REx-ID: 10125 | OA
Harker-Kirschneck, L., Hafner, A. E., Yao, T., Pulschen, A., Hurtig, F., Vanhille-Campos, C., … Šarić, A. (n.d.). Physical mechanisms of ESCRT-III-driven cell division in archaea. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.03.23.436559
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[48]
2021 | Journal Article | IST-REx-ID: 10340 | OA
Paraschiv, A., Lagny, T. J., Campos, C. V., Coudrier, E., Bassereau, P., & Šarić, A. (2021). Influence of membrane-cortex linkers on the extrusion of membrane tubes. Biophysical Journal. Cell Press. https://doi.org/10.1016/j.bpj.2020.12.028
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[47]
2021 | Journal Article | IST-REx-ID: 10338 | OA
Davis, L. K., Šarić, A., Hoogenboom, B. W., & Zilman, A. (2021). Physical modeling of multivalent interactions in the nuclear pore complex. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2021.01.039
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[46]
2021 | Journal Article | IST-REx-ID: 10337
Zeng, L., Palaia, I., Šarić, A., & Su, X. (2021). PLCγ1 promotes phase separation of T cell signaling components. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.202009154
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[45]
2021 | Journal Article | IST-REx-ID: 10339 | OA
Vanhille-Campos, C., & Šarić, A. (2021). Modelling the dynamics of vesicle reshaping and scission under osmotic shocks. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/d0sm02012e
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[44]
2020 | Journal Article | IST-REx-ID: 10336 | OA
Krausser, J., Knowles, T. P. J., & Šarić, A. (2020). Physical mechanisms of amyloid nucleation on fluid membranes. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2007694117
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[43]
2020 | Journal Article | IST-REx-ID: 10342 | OA
Tian, X., Leite, D. M., Scarpa, E., Nyberg, S., Fullstone, G., Forth, J., … Battaglia, G. (2020). On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.abc4397
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[42]
2020 | Journal Article | IST-REx-ID: 10344 | OA
Forster, J. C., Krausser, J., Vuyyuru, M. R., Baum, B., & Šarić, A. (2020). Exploring the design rules for efficient membrane-reshaping nanostructures. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.125.228101
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[41]
2020 | Journal Article | IST-REx-ID: 10341 | OA
Debets, V. E., Janssen, L. M. C., & Šarić, A. (2020). Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/d0sm00712a
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[40]
2020 | Journal Article | IST-REx-ID: 10346 | OA
Hafner, A. E., Gyori, N. G., Bench, C. A., Davis, L. K., & Šarić, A. (2020). Modeling fibrillogenesis of collagen-mimetic molecules. Biophysical Journal. Cell Press. https://doi.org/10.1016/j.bpj.2020.09.013
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[39]
2020 | Journal Article | IST-REx-ID: 10350 | OA
Dear, A. J., Meisl, G., Šarić, A., Michaels, T. C. T., Kjaergaard, M., Linse, S., & Knowles, T. P. J. (2020). Identification of on- and off-pathway oligomers in amyloid fibril formation. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c9sc06501f
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[38]
2020 | Journal Article | IST-REx-ID: 10349 | OA
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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[37]
2020 | Journal Article | IST-REx-ID: 10347 | OA
Michaels, T. C. T., Šarić, A., Meisl, G., Heller, G. T., Curk, S., Arosio, P., … Knowles, T. P. J. (2020). Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2006684117
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[36]
2020 | Journal Article | IST-REx-ID: 10351 | OA
Michaels, T. C. T., Šarić, A., Curk, S., Bernfur, K., Arosio, P., Meisl, G., … Knowles, T. P. J. (2020). Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-020-0452-1
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[35]
2020 | Journal Article | IST-REx-ID: 10348 | OA
Pfitzner, A.-K., Mercier, V., Jiang, X., Moser von Filseck, J., Baum, B., Šarić, A., & Roux, A. (2020). An ESCRT-III polymerization sequence drives membrane deformation and fission. Cell. Elsevier. https://doi.org/10.1016/j.cell.2020.07.021
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[34]
2020 | Journal Article | IST-REx-ID: 10352 | OA
Davis, L. K., Ford, I. J., Šarić, A., & Hoogenboom, B. W. (2020). Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics. Physical Review E. American Physical Society. https://doi.org/10.1103/physreve.101.022420
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[33]
2020 | Journal Article | IST-REx-ID: 10353 | OA
Paraschiv, A., Hegde, S., Ganti, R., Pilizota, T., & Šarić, A. (2020). Dynamic clustering regulates activity of mechanosensitive membrane channels. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.124.048102
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[32]
2019 | Journal Article | IST-REx-ID: 10354 | OA
Harker-Kirschneck, L., Baum, B., & Šarić, A. (2019). Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico. BMC Biology. Springer Nature. https://doi.org/10.1186/s12915-019-0700-2
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[31]
2019 | Journal Article | IST-REx-ID: 10355 | OA
Hafner, A. E., Krausser, J., & Šarić, A. (2019). Minimal coarse-grained models for molecular self-organisation in biology. Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2019.05.018
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[30]
2018 | Journal Article | IST-REx-ID: 10362
Fisher, P. D. E., Shen, Q., Akpinar, B., Davis, L. K., Chung, K. K. H., Baddeley, D., … Lusk, C. P. (2018). A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.7b08044
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[29]
2018 | Journal Article | IST-REx-ID: 10360
Cohen, S. I. A., Cukalevski, R., Michaels, T. C. T., Šarić, A., Törnquist, M., Vendruscolo, M., … Linse, S. (2018). Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-018-0023-x
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[28]
2018 | Journal Article | IST-REx-ID: 10357
Dear, A. J., Šarić, A., Michaels, T. C. T., Dobson, C. M., & Knowles, T. P. J. (2018). Statistical mechanics of globular oligomer formation by protein molecules. The Journal of Physical Chemistry B. American Chemical Society. https://doi.org/10.1021/acs.jpcb.8b07805
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[27]
2018 | Journal Article | IST-REx-ID: 10359 | OA
Curk, T., Wirnsberger, P., Dobnikar, J., Frenkel, D., & Šarić, A. (2018). Controlling cargo trafficking in multicomponent membranes. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.8b00786
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[26]
2018 | Journal Article | IST-REx-ID: 10358 | OA
Michaels, T. C. T., Liu, L. X., Curk, S., Bolhuis, P. G., Šarić, A., & Knowles, T. P. J. (2018). Reaction rate theory for supramolecular kinetics: application to protein aggregation. Molecular Physics. Taylor & Francis. https://doi.org/10.1080/00268976.2018.1474280
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[25]
2018 | Journal Article | IST-REx-ID: 10361
Michaels, T. C. T., Šarić, A., Habchi, J., Chia, S., Meisl, G., Vendruscolo, M., … Knowles, T. P. J. (2018). Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation. Annual Review of Physical Chemistry. Annual Reviews. https://doi.org/10.1146/annurev-physchem-050317-021322
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[24]
2017 | Journal Article | IST-REx-ID: 10126 | OA
Vahid Belarghou, A., Šarić, A., & Idema, T. (2017). Curvature mediated interactions in highly curved membranes. Biophysical Journal. Elsevier . https://doi.org/10.1016/j.bpj.2016.11.2123
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[23]
2017 | Journal Article | IST-REx-ID: 10370 | OA
Helle, S. C. J., Feng, Q., Aebersold, M. J., Hirt, L., Grüter, R. R., Vahid, A., … Kornmann, B. (2017). Mechanical force induces mitochondrial fission. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.30292
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2017 | Journal Article | IST-REx-ID: 10369 | OA
Simunovic, M., Šarić, A., Henderson, J. M., Lee, K. Y. C., & Voth, G. A. (2017). Long-range organization of membrane-curving proteins. ACS Central Science. American Chemical Society. https://doi.org/10.1021/acscentsci.7b00392
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[21]
2017 | Journal Article | IST-REx-ID: 10373 | OA
Wirnsberger, P., Fijan, D., Lightwood, R. A., Šarić, A., Dellago, C., & Frenkel, D. (2017). Numerical evidence for thermally induced monopoles. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1621494114
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[20]
2017 | Journal Article | IST-REx-ID: 10374 | OA
Meisl, G., Rajah, L., Cohen, S. A. I., Pfammatter, M., Šarić, A., Hellstrand, E., … Knowles, T. P. J. (2017). Scaling behaviour and rate-determining steps in filamentous self-assembly. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c7sc01965c
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[19]
2017 | Journal Article | IST-REx-ID: 10375 | OA
Vahid, A., Šarić, A., & Idema, T. (2017). Curvature variation controls particle aggregation on fluid vesicles. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c7sm00433h
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[18]
2016 | Journal Article | IST-REx-ID: 10377 | OA
van der Wel, C., Vahid, A., Šarić, A., Idema, T., Heinrich, D., & Kraft, D. J. (2016). Lipid membrane-mediated attraction between curvature inducing objects. Scientific Reports. Springer Nature. https://doi.org/10.1038/srep32825
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[17]
2016 | Journal Article | IST-REx-ID: 10376 | OA
Šarić, A., Michaels, T. C. T., Zaccone, A., Knowles, T. P. J., & Frenkel, D. (2016). Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation. The Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/1.4965040
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[16]
2016 | Journal Article | IST-REx-ID: 10380 | OA
Wirnsberger, P., Fijan, D., Šarić, A., Neumann, M., Dellago, C., & Frenkel, D. (2016). Non-equilibrium simulations of thermally induced electric fields in water. The Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/1.4953036
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[15]
2016 | Journal Article | IST-REx-ID: 10381 | OA
Bachmann, S. J., Kotar, J., Parolini, L., Šarić, A., Cicuta, P., Di Michele, L., & Mognetti, B. M. (2016). Melting transition in lipid vesicles functionalised by mobile DNA linkers. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c6sm01515h
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[14]
2016 | Journal Article | IST-REx-ID: 10378 | OA
Šarić, A., Buell, A. K., Meisl, G., Michaels, T. C. T., Dobson, C. M., Linse, S., … Frenkel, D. (2016). Physical determinants of the self-replication of protein fibrils. Nature Physics. Springer Nature. https://doi.org/10.1038/nphys3828
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[13]
2014 | Journal Article | IST-REx-ID: 10382 | OA
Šarić, A., Chebaro, Y. C., Knowles, T. P. J., & Frenkel, D. (2014). Crucial role of nonspecific interactions in amyloid nucleation. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1410159111
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[12]
2014 | Journal Article | IST-REx-ID: 10383 | OA
Mallory, S. A., Šarić, A., Valeriani, C., & Cacciuto, A. (2014). Anomalous thermomechanical properties of a self-propelled colloidal fluid. Physical Review E. American Physical Society. https://doi.org/10.1103/physreve.89.052303
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[11]
2013 | Journal Article | IST-REx-ID: 10384 | OA
Mognetti, B. M., Šarić, A., Angioletti-Uberti, S., Cacciuto, A., Valeriani, C., & Frenkel, D. (2013). Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.111.245702
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[10]
2013 | Journal Article | IST-REx-ID: 10386
Šarić, A., & Cacciuto, A. (2013). Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm50188d
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[9]
2013 | Journal Article | IST-REx-ID: 10385
Napoli, J. A., Šarić, A., & Cacciuto, A. (2013). Collapsing nanoparticle-laden nanotubes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm51495a
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[8]
2012 | Journal Article | IST-REx-ID: 10387 | OA
Šarić, A., & Cacciuto, A. (2012). Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.109.188101
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[7]
2012 | Journal Article | IST-REx-ID: 10388 | OA
Šarić, A., & Cacciuto, A. (2012). Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.108.118101
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[6]
2011 | Journal Article | IST-REx-ID: 10389 | OA
Šarić, A., & Cacciuto, A. (2011). Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c1sm05773a
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[5]
2010 | Journal Article | IST-REx-ID: 10128
Šarić, A., Hrenar, T., Mališ, M., & Došlić, N. (2010). Quantum mechanical study of secondary structure formation in protected dipeptides. Physical Chemistry Chemical Physics. Royal Society of Chemistry . https://doi.org/10.1039/b923041f
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[4]
2010 | Journal Article | IST-REx-ID: 10127 | OA
Šarić, A., & Cacciuto, A. (2010). Particle self-assembly on soft elastic shells. Soft Matter. Royal Society of Chemistry (RSC). https://doi.org/10.1039/c0sm01143f
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[3]
2010 | Journal Article | IST-REx-ID: 10390 | OA
Šarić, A., Bozorgui, B., & Cacciuto, A. (2010). Packing of soft asymmetric dumbbells. The Journal of Physical Chemistry B. American Chemical Society. https://doi.org/10.1021/jp107545w
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[2]
2010 | Journal Article | IST-REx-ID: 10391 | OA
Šarić, A., Pàmies, J. C., & Cacciuto, A. (2010). Effective elasticity of a flexible filament bound to a deformable cylindrical surface. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.104.226101
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[1]
2008 | Journal Article | IST-REx-ID: 10392
Šarić, A., Vrček, V., & Bühl, M. (2008). Density functional study of protonated formylmetallocenes. Organometallics. American Chemical Society. https://doi.org/10.1021/om700916f
View | DOI | Download None (ext.)
 
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