Anđela Šarić

Saric Group

65 Publications

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[65]
2024 | Journal Article | IST-REx-ID: 15001 | OA
Curk S, Krausser J, Meisl G, et al. Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(7). doi:10.1073/pnas.2220075121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[64]
2024 | Journal Article | IST-REx-ID: 15116 | OA
Giubertoni G, Feng L, Klein K, et al. Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(11). doi:10.1073/pnas.2313162121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[63]
2023 | Journal Article | IST-REx-ID: 12708 | OA
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
[Published Version] View | Files available | DOI | WoS | arXiv
 
[62]
2023 | Journal Article | IST-REx-ID: 12756 | OA
Hurtig F, Burgers TCQ, Cezanne A, et al. The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division. Science Advances. 2023;9(11). doi:10.1126/sciadv.ade5224
[Published Version] View | Files available | DOI | WoS
 
[61]
2023 | Journal Article | IST-REx-ID: 13094 | OA
Azadbakht A, Meadowcroft B, Varkevisser T, Šarić A, Kraft DJ. Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. Nano Letters. 2023;23(10):4267–4273. doi:10.1021/acs.nanolett.3c00375
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[60]
2023 | Journal Article | IST-REx-ID: 13237
Michaels TCT, Qian D, Šarić A, Vendruscolo M, Linse S, Knowles TPJ. Amyloid formation as a protein phase transition. Nature Reviews Physics. 2023;5:379–397. doi:10.1038/s42254-023-00598-9
View | DOI | WoS
 
[59]
2023 | Journal Article | IST-REx-ID: 14610 | OA
Bussi C, Mangiarotti A, Vanhille-Campos CE, et al. Stress granules plug and stabilize damaged endolysosomal membranes. Nature. 2023. doi:10.1038/s41586-023-06726-w
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[58]
2023 | Research Data | IST-REx-ID: 14472 | OA
Vanhille-Campos CE, Šarić A. Stress granules plug and stabilize damaged endolysosomal membranes. 2023. doi:10.15479/AT:ISTA:14472
[Published Version] View | Files available | DOI
 
[57]
2023 | Journal Article | IST-REx-ID: 14844 | OA
Azadbakht A, Meadowcroft B, Majek J, Šarić A, Kraft DJ. Nonadditivity in interactions between three membrane-wrapped colloidal spheres. Biophysical Journal. doi:10.1016/j.bpj.2023.12.020
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[56]
2023 | Journal Article | IST-REx-ID: 13971 | OA
Grober D, Palaia I, Ucar MC, Hannezo EB, Šarić A, Palacci JA. Unconventional colloidal aggregation in chiral bacterial baths. Nature Physics. 2023;19:1680-1688. doi:10.1038/s41567-023-02136-x
[Published Version] View | Files available | DOI | WoS
 
[55]
2022 | Journal Article | IST-REx-ID: 12108 | OA
Meadowcroft B, Palaia I, Pfitzner AK, Roux A, Baum B, Šarić A. Mechanochemical rules for shape-shifting filaments that remodel membranes. Physical Review Letters. 2022;129(26). doi:10.1103/PhysRevLett.129.268101
[Preprint] View | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
[54]
2022 | Journal Article | IST-REx-ID: 12152 | OA
Jiang X, Harker-Kirschneck L, Vanhille-Campos CE, et al. Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. PLOS Computational Biology. 2022;18(10). doi:10.1371/journal.pcbi.1010586
[Published Version] View | Files available | DOI | WoS
 
[53]
2022 | Journal Article | IST-REx-ID: 12251 | OA
Weiffert T, Meisl G, Curk S, et al. Influence of denaturants on amyloid β42 aggregation kinetics. Frontiers in Neuroscience. 2022;16. doi:10.3389/fnins.2022.943355
[Published Version] View | Files available | DOI | WoS
 
[52]
2022 | Journal Article | IST-REx-ID: 11400 | OA
Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures with specific interactions. The Journal of Chemical Physics. 2022;156(19). doi:10.1063/5.0087769
[Published Version] View | Files available | DOI | WoS
 
[51]
2022 | Journal Article | IST-REx-ID: 11841 | OA
Toprakcioglu Z, Kamada A, Michaels TCT, et al. Adsorption free energy predicts amyloid protein nucleation rates. Proceedings of the National Academy of Sciences of the United States of America. 2022;119(31). doi:10.1073/pnas.2109718119
[Published Version] View | Files available | DOI | WoS
 
[50]
2021 | Journal Article | IST-REx-ID: 10124 | OA
Palaia I, Paraschiv A, Debets V, Storm C, Šarić A. Durotaxis of passive nanoparticles on elastic membranes. ACS Nano. 2021. doi:10.1021/acsnano.1c02777
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[49]
2021 | Preprint | IST-REx-ID: 10125 | OA
Harker-Kirschneck L, Hafner AE, Yao T, et al. Physical mechanisms of ESCRT-III-driven cell division in archaea. bioRxiv. doi:10.1101/2021.03.23.436559
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[48]
2021 | Journal Article | IST-REx-ID: 10340 | OA
Paraschiv A, Lagny TJ, Campos CV, Coudrier E, Bassereau P, Šarić A. Influence of membrane-cortex linkers on the extrusion of membrane tubes. Biophysical Journal. 2021;120(4):598-606. doi:10.1016/j.bpj.2020.12.028
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[47]
2021 | Journal Article | IST-REx-ID: 10338 | OA
Davis LK, Šarić A, Hoogenboom BW, Zilman A. Physical modeling of multivalent interactions in the nuclear pore complex. Biophysical Journal. 2021;120(9):1565-1577. doi:10.1016/j.bpj.2021.01.039
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[46]
2021 | Journal Article | IST-REx-ID: 10337
Zeng L, Palaia I, Šarić A, Su X. PLCγ1 promotes phase separation of T cell signaling components. Journal of Cell Biology. 2021;220(6). doi:10.1083/jcb.202009154
View | DOI | PubMed | Europe PMC
 
[45]
2021 | Journal Article | IST-REx-ID: 10339 | OA
Vanhille-Campos C, Šarić A. Modelling the dynamics of vesicle reshaping and scission under osmotic shocks. Soft Matter. 2021;17(14):3798-3806. doi:10.1039/d0sm02012e
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[44]
2020 | Journal Article | IST-REx-ID: 10336 | OA
Krausser J, Knowles TPJ, Šarić A. Physical mechanisms of amyloid nucleation on fluid membranes. Proceedings of the National Academy of Sciences. 2020;117(52):33090-33098. doi:10.1073/pnas.2007694117
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[43]
2020 | Journal Article | IST-REx-ID: 10342 | OA
Tian X, Leite DM, Scarpa E, et al. On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias. Science Advances. 2020;6(48). doi:10.1126/sciadv.abc4397
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[42]
2020 | Journal Article | IST-REx-ID: 10344 | OA
Forster JC, Krausser J, Vuyyuru MR, Baum B, Šarić A. Exploring the design rules for efficient membrane-reshaping nanostructures. Physical Review Letters. 2020;125(22). doi:10.1103/physrevlett.125.228101
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[41]
2020 | Journal Article | IST-REx-ID: 10341 | OA
Debets VE, Janssen LMC, Šarić A. Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes. Soft Matter. 2020;16(47):10628-10639. doi:10.1039/d0sm00712a
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[40]
2020 | Journal Article | IST-REx-ID: 10346 | OA
Hafner AE, Gyori NG, Bench CA, Davis LK, Šarić A. Modeling fibrillogenesis of collagen-mimetic molecules. Biophysical Journal. 2020;119(9):1791-1799. doi:10.1016/j.bpj.2020.09.013
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[39]
2020 | Journal Article | IST-REx-ID: 10350 | OA
Dear AJ, Meisl G, Šarić A, et al. Identification of on- and off-pathway oligomers in amyloid fibril formation. Chemical Science. 2020;11(24):6236-6247. doi:10.1039/c9sc06501f
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[38]
2020 | Journal Article | IST-REx-ID: 10349 | OA
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[37]
2020 | Journal Article | IST-REx-ID: 10347 | OA
Michaels TCT, Šarić A, Meisl G, et al. Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors. Proceedings of the National Academy of Sciences. 2020;117(39):24251-24257. doi:10.1073/pnas.2006684117
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[36]
2020 | Journal Article | IST-REx-ID: 10351 | OA
Michaels TCT, Šarić A, Curk S, et al. Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide. Nature Chemistry. 2020;12(5):445-451. doi:10.1038/s41557-020-0452-1
View | Files available | DOI | Download None (ext.) | PubMed | Europe PMC
 
[35]
2020 | Journal Article | IST-REx-ID: 10348 | OA
Pfitzner A-K, Mercier V, Jiang X, et al. An ESCRT-III polymerization sequence drives membrane deformation and fission. Cell. 2020;182(5):1140-1155.e18. doi:10.1016/j.cell.2020.07.021
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[34]
2020 | Journal Article | IST-REx-ID: 10352 | OA
Davis LK, Ford IJ, Šarić A, Hoogenboom BW. Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics. Physical Review E. 2020;101(2). doi:10.1103/physreve.101.022420
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[33]
2020 | Journal Article | IST-REx-ID: 10353 | OA
Paraschiv A, Hegde S, Ganti R, Pilizota T, Šarić A. Dynamic clustering regulates activity of mechanosensitive membrane channels. Physical Review Letters. 2020;124(4). doi:10.1103/physrevlett.124.048102
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[32]
2019 | Journal Article | IST-REx-ID: 10354 | OA
Harker-Kirschneck L, Baum B, Šarić A. Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico. BMC Biology. 2019;17(1). doi:10.1186/s12915-019-0700-2
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[31]
2019 | Journal Article | IST-REx-ID: 10355 | OA
Hafner AE, Krausser J, Šarić A. Minimal coarse-grained models for molecular self-organisation in biology. Current Opinion in Structural Biology. 2019;58:43-52. doi:10.1016/j.sbi.2019.05.018
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[30]
2018 | Journal Article | IST-REx-ID: 10362
Fisher PDE, Shen Q, Akpinar B, et al. A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement. ACS Nano. 2018;12(2):1508-1518. doi:10.1021/acsnano.7b08044
View | DOI | PubMed | Europe PMC
 
[29]
2018 | Journal Article | IST-REx-ID: 10360
Cohen SIA, Cukalevski R, Michaels TCT, et al. Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide. Nature Chemistry. 2018;10(5):523-531. doi:10.1038/s41557-018-0023-x
View | DOI | PubMed | Europe PMC
 
[28]
2018 | Journal Article | IST-REx-ID: 10357
Dear AJ, Šarić A, Michaels TCT, Dobson CM, Knowles TPJ. Statistical mechanics of globular oligomer formation by protein molecules. The Journal of Physical Chemistry B. 2018;122(49):11721-11730. doi:10.1021/acs.jpcb.8b07805
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[27]
2018 | Journal Article | IST-REx-ID: 10359 | OA
Curk T, Wirnsberger P, Dobnikar J, Frenkel D, Šarić A. Controlling cargo trafficking in multicomponent membranes. Nano Letters. 2018;18(9):5350-5356. doi:10.1021/acs.nanolett.8b00786
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[26]
2018 | Journal Article | IST-REx-ID: 10358 | OA
Michaels TCT, Liu LX, Curk S, Bolhuis PG, Šarić A, Knowles TPJ. Reaction rate theory for supramolecular kinetics: application to protein aggregation. Molecular Physics. 2018;116(21-22):3055-3065. doi:10.1080/00268976.2018.1474280
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[25]
2018 | Journal Article | IST-REx-ID: 10361
Michaels TCT, Šarić A, Habchi J, et al. Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation. Annual Review of Physical Chemistry. 2018;69(1):273-298. doi:10.1146/annurev-physchem-050317-021322
View | DOI | PubMed | Europe PMC
 
[24]
2017 | Journal Article | IST-REx-ID: 10126 | OA
Vahid Belarghou A, Šarić A, Idema T. Curvature mediated interactions in highly curved membranes. Biophysical Journal. 2017;112(3). doi:10.1016/j.bpj.2016.11.2123
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[23]
2017 | Journal Article | IST-REx-ID: 10370 | OA
Helle SCJ, Feng Q, Aebersold MJ, et al. Mechanical force induces mitochondrial fission. eLife. 2017;6. doi:10.7554/elife.30292
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2017 | Journal Article | IST-REx-ID: 10369 | OA
Simunovic M, Šarić A, Henderson JM, Lee KYC, Voth GA. Long-range organization of membrane-curving proteins. ACS Central Science. 2017;3(12):1246-1253. doi:10.1021/acscentsci.7b00392
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[21]
2017 | Journal Article | IST-REx-ID: 10373 | OA
Wirnsberger P, Fijan D, Lightwood RA, Šarić A, Dellago C, Frenkel D. Numerical evidence for thermally induced monopoles. Proceedings of the National Academy of Sciences. 2017;114(19):4911-4914. doi:10.1073/pnas.1621494114
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[20]
2017 | Journal Article | IST-REx-ID: 10374 | OA
Meisl G, Rajah L, Cohen SAI, et al. Scaling behaviour and rate-determining steps in filamentous self-assembly. Chemical Science. 2017;8(10):7087-7097. doi:10.1039/c7sc01965c
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[19]
2017 | Journal Article | IST-REx-ID: 10375 | OA
Vahid A, Šarić A, Idema T. Curvature variation controls particle aggregation on fluid vesicles. Soft Matter. 2017;13(28):4924-4930. doi:10.1039/c7sm00433h
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[18]
2016 | Journal Article | IST-REx-ID: 10377 | OA
van der Wel C, Vahid A, Šarić A, Idema T, Heinrich D, Kraft DJ. Lipid membrane-mediated attraction between curvature inducing objects. Scientific Reports. 2016;6(1). doi:10.1038/srep32825
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[17]
2016 | Journal Article | IST-REx-ID: 10376 | OA
Šarić A, Michaels TCT, Zaccone A, Knowles TPJ, Frenkel D. Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation. The Journal of Chemical Physics. 2016;145(21). doi:10.1063/1.4965040
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[16]
2016 | Journal Article | IST-REx-ID: 10380 | OA
Wirnsberger P, Fijan D, Šarić A, Neumann M, Dellago C, Frenkel D. Non-equilibrium simulations of thermally induced electric fields in water. The Journal of Chemical Physics. 2016;144(22). doi:10.1063/1.4953036
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[15]
2016 | Journal Article | IST-REx-ID: 10381 | OA
Bachmann SJ, Kotar J, Parolini L, et al. Melting transition in lipid vesicles functionalised by mobile DNA linkers. Soft Matter. 2016;12(37):7804-7817. doi:10.1039/c6sm01515h
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[14]
2016 | Journal Article | IST-REx-ID: 10378 | OA
Šarić A, Buell AK, Meisl G, et al. Physical determinants of the self-replication of protein fibrils. Nature Physics. 2016;12(9):874-880. doi:10.1038/nphys3828
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[13]
2014 | Journal Article | IST-REx-ID: 10382 | OA
Šarić A, Chebaro YC, Knowles TPJ, Frenkel D. Crucial role of nonspecific interactions in amyloid nucleation. Proceedings of the National Academy of Sciences. 2014;111(50):17869-17874. doi:10.1073/pnas.1410159111
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[12]
2014 | Journal Article | IST-REx-ID: 10383 | OA
Mallory SA, Šarić A, Valeriani C, Cacciuto A. Anomalous thermomechanical properties of a self-propelled colloidal fluid. Physical Review E. 2014;89(5). doi:10.1103/physreve.89.052303
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[11]
2013 | Journal Article | IST-REx-ID: 10384 | OA
Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 2013;111(24). doi:10.1103/physrevlett.111.245702
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 10386
Šarić A, Cacciuto A. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 2013;9(29). doi:10.1039/c3sm50188d
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[9]
2013 | Journal Article | IST-REx-ID: 10385
Napoli JA, Šarić A, Cacciuto A. Collapsing nanoparticle-laden nanotubes. Soft Matter. 2013;9(37):8881-8886. doi:10.1039/c3sm51495a
View | DOI
 
[8]
2012 | Journal Article | IST-REx-ID: 10387 | OA
Šarić A, Cacciuto A. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 2012;109(18). doi:10.1103/physrevlett.109.188101
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 10388 | OA
Šarić A, Cacciuto A. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 2012;108(11). doi:10.1103/physrevlett.108.118101
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[6]
2011 | Journal Article | IST-REx-ID: 10389 | OA
Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 2011;7(18). doi:10.1039/c1sm05773a
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[5]
2010 | Journal Article | IST-REx-ID: 10128
Šarić A, Hrenar T, Mališ M, Došlić N. Quantum mechanical study of secondary structure formation in protected dipeptides. Physical Chemistry Chemical Physics. 2010;12(18):4678-4685. doi:10.1039/b923041f
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[4]
2010 | Journal Article | IST-REx-ID: 10127 | OA
Šarić A, Cacciuto A. Particle self-assembly on soft elastic shells. Soft Matter. 2010;7(5):1874-1878. doi:10.1039/c0sm01143f
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[3]
2010 | Journal Article | IST-REx-ID: 10390 | OA
Šarić A, Bozorgui B, Cacciuto A. Packing of soft asymmetric dumbbells. The Journal of Physical Chemistry B. 2010;115(22):7182-7189. doi:10.1021/jp107545w
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[2]
2010 | Journal Article | IST-REx-ID: 10391 | OA
Šarić A, Pàmies JC, Cacciuto A. Effective elasticity of a flexible filament bound to a deformable cylindrical surface. Physical Review Letters. 2010;104(22). doi:10.1103/physrevlett.104.226101
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[1]
2008 | Journal Article | IST-REx-ID: 10392
Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes. Organometallics. 2008;27(3):394-401. doi:10.1021/om700916f
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65 Publications

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[65]
2024 | Journal Article | IST-REx-ID: 15001 | OA
Curk S, Krausser J, Meisl G, et al. Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(7). doi:10.1073/pnas.2220075121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[64]
2024 | Journal Article | IST-REx-ID: 15116 | OA
Giubertoni G, Feng L, Klein K, et al. Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(11). doi:10.1073/pnas.2313162121
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[63]
2023 | Journal Article | IST-REx-ID: 12708 | OA
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
[Published Version] View | Files available | DOI | WoS | arXiv
 
[62]
2023 | Journal Article | IST-REx-ID: 12756 | OA
Hurtig F, Burgers TCQ, Cezanne A, et al. The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division. Science Advances. 2023;9(11). doi:10.1126/sciadv.ade5224
[Published Version] View | Files available | DOI | WoS
 
[61]
2023 | Journal Article | IST-REx-ID: 13094 | OA
Azadbakht A, Meadowcroft B, Varkevisser T, Šarić A, Kraft DJ. Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. Nano Letters. 2023;23(10):4267–4273. doi:10.1021/acs.nanolett.3c00375
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[60]
2023 | Journal Article | IST-REx-ID: 13237
Michaels TCT, Qian D, Šarić A, Vendruscolo M, Linse S, Knowles TPJ. Amyloid formation as a protein phase transition. Nature Reviews Physics. 2023;5:379–397. doi:10.1038/s42254-023-00598-9
View | DOI | WoS
 
[59]
2023 | Journal Article | IST-REx-ID: 14610 | OA
Bussi C, Mangiarotti A, Vanhille-Campos CE, et al. Stress granules plug and stabilize damaged endolysosomal membranes. Nature. 2023. doi:10.1038/s41586-023-06726-w
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[58]
2023 | Research Data | IST-REx-ID: 14472 | OA
Vanhille-Campos CE, Šarić A. Stress granules plug and stabilize damaged endolysosomal membranes. 2023. doi:10.15479/AT:ISTA:14472
[Published Version] View | Files available | DOI
 
[57]
2023 | Journal Article | IST-REx-ID: 14844 | OA
Azadbakht A, Meadowcroft B, Majek J, Šarić A, Kraft DJ. Nonadditivity in interactions between three membrane-wrapped colloidal spheres. Biophysical Journal. doi:10.1016/j.bpj.2023.12.020
[Published Version] View | DOI | Download Published Version (ext.)
 
[56]
2023 | Journal Article | IST-REx-ID: 13971 | OA
Grober D, Palaia I, Ucar MC, Hannezo EB, Šarić A, Palacci JA. Unconventional colloidal aggregation in chiral bacterial baths. Nature Physics. 2023;19:1680-1688. doi:10.1038/s41567-023-02136-x
[Published Version] View | Files available | DOI | WoS
 
[55]
2022 | Journal Article | IST-REx-ID: 12108 | OA
Meadowcroft B, Palaia I, Pfitzner AK, Roux A, Baum B, Šarić A. Mechanochemical rules for shape-shifting filaments that remodel membranes. Physical Review Letters. 2022;129(26). doi:10.1103/PhysRevLett.129.268101
[Preprint] View | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
[54]
2022 | Journal Article | IST-REx-ID: 12152 | OA
Jiang X, Harker-Kirschneck L, Vanhille-Campos CE, et al. Modelling membrane reshaping by staged polymerization of ESCRT-III filaments. PLOS Computational Biology. 2022;18(10). doi:10.1371/journal.pcbi.1010586
[Published Version] View | Files available | DOI | WoS
 
[53]
2022 | Journal Article | IST-REx-ID: 12251 | OA
Weiffert T, Meisl G, Curk S, et al. Influence of denaturants on amyloid β42 aggregation kinetics. Frontiers in Neuroscience. 2022;16. doi:10.3389/fnins.2022.943355
[Published Version] View | Files available | DOI | WoS
 
[52]
2022 | Journal Article | IST-REx-ID: 11400 | OA
Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures with specific interactions. The Journal of Chemical Physics. 2022;156(19). doi:10.1063/5.0087769
[Published Version] View | Files available | DOI | WoS
 
[51]
2022 | Journal Article | IST-REx-ID: 11841 | OA
Toprakcioglu Z, Kamada A, Michaels TCT, et al. Adsorption free energy predicts amyloid protein nucleation rates. Proceedings of the National Academy of Sciences of the United States of America. 2022;119(31). doi:10.1073/pnas.2109718119
[Published Version] View | Files available | DOI | WoS
 
[50]
2021 | Journal Article | IST-REx-ID: 10124 | OA
Palaia I, Paraschiv A, Debets V, Storm C, Šarić A. Durotaxis of passive nanoparticles on elastic membranes. ACS Nano. 2021. doi:10.1021/acsnano.1c02777
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[49]
2021 | Preprint | IST-REx-ID: 10125 | OA
Harker-Kirschneck L, Hafner AE, Yao T, et al. Physical mechanisms of ESCRT-III-driven cell division in archaea. bioRxiv. doi:10.1101/2021.03.23.436559
[Preprint] View | DOI | Download Preprint (ext.)
 
[48]
2021 | Journal Article | IST-REx-ID: 10340 | OA
Paraschiv A, Lagny TJ, Campos CV, Coudrier E, Bassereau P, Šarić A. Influence of membrane-cortex linkers on the extrusion of membrane tubes. Biophysical Journal. 2021;120(4):598-606. doi:10.1016/j.bpj.2020.12.028
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[47]
2021 | Journal Article | IST-REx-ID: 10338 | OA
Davis LK, Šarić A, Hoogenboom BW, Zilman A. Physical modeling of multivalent interactions in the nuclear pore complex. Biophysical Journal. 2021;120(9):1565-1577. doi:10.1016/j.bpj.2021.01.039
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[46]
2021 | Journal Article | IST-REx-ID: 10337
Zeng L, Palaia I, Šarić A, Su X. PLCγ1 promotes phase separation of T cell signaling components. Journal of Cell Biology. 2021;220(6). doi:10.1083/jcb.202009154
View | DOI | PubMed | Europe PMC
 
[45]
2021 | Journal Article | IST-REx-ID: 10339 | OA
Vanhille-Campos C, Šarić A. Modelling the dynamics of vesicle reshaping and scission under osmotic shocks. Soft Matter. 2021;17(14):3798-3806. doi:10.1039/d0sm02012e
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[44]
2020 | Journal Article | IST-REx-ID: 10336 | OA
Krausser J, Knowles TPJ, Šarić A. Physical mechanisms of amyloid nucleation on fluid membranes. Proceedings of the National Academy of Sciences. 2020;117(52):33090-33098. doi:10.1073/pnas.2007694117
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[43]
2020 | Journal Article | IST-REx-ID: 10342 | OA
Tian X, Leite DM, Scarpa E, et al. On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias. Science Advances. 2020;6(48). doi:10.1126/sciadv.abc4397
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[42]
2020 | Journal Article | IST-REx-ID: 10344 | OA
Forster JC, Krausser J, Vuyyuru MR, Baum B, Šarić A. Exploring the design rules for efficient membrane-reshaping nanostructures. Physical Review Letters. 2020;125(22). doi:10.1103/physrevlett.125.228101
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[41]
2020 | Journal Article | IST-REx-ID: 10341 | OA
Debets VE, Janssen LMC, Šarić A. Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes. Soft Matter. 2020;16(47):10628-10639. doi:10.1039/d0sm00712a
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[40]
2020 | Journal Article | IST-REx-ID: 10346 | OA
Hafner AE, Gyori NG, Bench CA, Davis LK, Šarić A. Modeling fibrillogenesis of collagen-mimetic molecules. Biophysical Journal. 2020;119(9):1791-1799. doi:10.1016/j.bpj.2020.09.013
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[39]
2020 | Journal Article | IST-REx-ID: 10350 | OA
Dear AJ, Meisl G, Šarić A, et al. Identification of on- and off-pathway oligomers in amyloid fibril formation. Chemical Science. 2020;11(24):6236-6247. doi:10.1039/c9sc06501f
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[38]
2020 | Journal Article | IST-REx-ID: 10349 | OA
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[37]
2020 | Journal Article | IST-REx-ID: 10347 | OA
Michaels TCT, Šarić A, Meisl G, et al. Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors. Proceedings of the National Academy of Sciences. 2020;117(39):24251-24257. doi:10.1073/pnas.2006684117
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[36]
2020 | Journal Article | IST-REx-ID: 10351 | OA
Michaels TCT, Šarić A, Curk S, et al. Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide. Nature Chemistry. 2020;12(5):445-451. doi:10.1038/s41557-020-0452-1
View | Files available | DOI | Download None (ext.) | PubMed | Europe PMC
 
[35]
2020 | Journal Article | IST-REx-ID: 10348 | OA
Pfitzner A-K, Mercier V, Jiang X, et al. An ESCRT-III polymerization sequence drives membrane deformation and fission. Cell. 2020;182(5):1140-1155.e18. doi:10.1016/j.cell.2020.07.021
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[34]
2020 | Journal Article | IST-REx-ID: 10352 | OA
Davis LK, Ford IJ, Šarić A, Hoogenboom BW. Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics. Physical Review E. 2020;101(2). doi:10.1103/physreve.101.022420
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[33]
2020 | Journal Article | IST-REx-ID: 10353 | OA
Paraschiv A, Hegde S, Ganti R, Pilizota T, Šarić A. Dynamic clustering regulates activity of mechanosensitive membrane channels. Physical Review Letters. 2020;124(4). doi:10.1103/physrevlett.124.048102
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[32]
2019 | Journal Article | IST-REx-ID: 10354 | OA
Harker-Kirschneck L, Baum B, Šarić A. Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico. BMC Biology. 2019;17(1). doi:10.1186/s12915-019-0700-2
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[31]
2019 | Journal Article | IST-REx-ID: 10355 | OA
Hafner AE, Krausser J, Šarić A. Minimal coarse-grained models for molecular self-organisation in biology. Current Opinion in Structural Biology. 2019;58:43-52. doi:10.1016/j.sbi.2019.05.018
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[30]
2018 | Journal Article | IST-REx-ID: 10362
Fisher PDE, Shen Q, Akpinar B, et al. A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement. ACS Nano. 2018;12(2):1508-1518. doi:10.1021/acsnano.7b08044
View | DOI | PubMed | Europe PMC
 
[29]
2018 | Journal Article | IST-REx-ID: 10360
Cohen SIA, Cukalevski R, Michaels TCT, et al. Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide. Nature Chemistry. 2018;10(5):523-531. doi:10.1038/s41557-018-0023-x
View | DOI | PubMed | Europe PMC
 
[28]
2018 | Journal Article | IST-REx-ID: 10357
Dear AJ, Šarić A, Michaels TCT, Dobson CM, Knowles TPJ. Statistical mechanics of globular oligomer formation by protein molecules. The Journal of Physical Chemistry B. 2018;122(49):11721-11730. doi:10.1021/acs.jpcb.8b07805
View | DOI | PubMed | Europe PMC
 
[27]
2018 | Journal Article | IST-REx-ID: 10359 | OA
Curk T, Wirnsberger P, Dobnikar J, Frenkel D, Šarić A. Controlling cargo trafficking in multicomponent membranes. Nano Letters. 2018;18(9):5350-5356. doi:10.1021/acs.nanolett.8b00786
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[26]
2018 | Journal Article | IST-REx-ID: 10358 | OA
Michaels TCT, Liu LX, Curk S, Bolhuis PG, Šarić A, Knowles TPJ. Reaction rate theory for supramolecular kinetics: application to protein aggregation. Molecular Physics. 2018;116(21-22):3055-3065. doi:10.1080/00268976.2018.1474280
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[25]
2018 | Journal Article | IST-REx-ID: 10361
Michaels TCT, Šarić A, Habchi J, et al. Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation. Annual Review of Physical Chemistry. 2018;69(1):273-298. doi:10.1146/annurev-physchem-050317-021322
View | DOI | PubMed | Europe PMC
 
[24]
2017 | Journal Article | IST-REx-ID: 10126 | OA
Vahid Belarghou A, Šarić A, Idema T. Curvature mediated interactions in highly curved membranes. Biophysical Journal. 2017;112(3). doi:10.1016/j.bpj.2016.11.2123
[Published Version] View | DOI | Download Published Version (ext.)
 
[23]
2017 | Journal Article | IST-REx-ID: 10370 | OA
Helle SCJ, Feng Q, Aebersold MJ, et al. Mechanical force induces mitochondrial fission. eLife. 2017;6. doi:10.7554/elife.30292
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2017 | Journal Article | IST-REx-ID: 10369 | OA
Simunovic M, Šarić A, Henderson JM, Lee KYC, Voth GA. Long-range organization of membrane-curving proteins. ACS Central Science. 2017;3(12):1246-1253. doi:10.1021/acscentsci.7b00392
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[21]
2017 | Journal Article | IST-REx-ID: 10373 | OA
Wirnsberger P, Fijan D, Lightwood RA, Šarić A, Dellago C, Frenkel D. Numerical evidence for thermally induced monopoles. Proceedings of the National Academy of Sciences. 2017;114(19):4911-4914. doi:10.1073/pnas.1621494114
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[20]
2017 | Journal Article | IST-REx-ID: 10374 | OA
Meisl G, Rajah L, Cohen SAI, et al. Scaling behaviour and rate-determining steps in filamentous self-assembly. Chemical Science. 2017;8(10):7087-7097. doi:10.1039/c7sc01965c
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[19]
2017 | Journal Article | IST-REx-ID: 10375 | OA
Vahid A, Šarić A, Idema T. Curvature variation controls particle aggregation on fluid vesicles. Soft Matter. 2017;13(28):4924-4930. doi:10.1039/c7sm00433h
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[18]
2016 | Journal Article | IST-REx-ID: 10377 | OA
van der Wel C, Vahid A, Šarić A, Idema T, Heinrich D, Kraft DJ. Lipid membrane-mediated attraction between curvature inducing objects. Scientific Reports. 2016;6(1). doi:10.1038/srep32825
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[17]
2016 | Journal Article | IST-REx-ID: 10376 | OA
Šarić A, Michaels TCT, Zaccone A, Knowles TPJ, Frenkel D. Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation. The Journal of Chemical Physics. 2016;145(21). doi:10.1063/1.4965040
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[16]
2016 | Journal Article | IST-REx-ID: 10380 | OA
Wirnsberger P, Fijan D, Šarić A, Neumann M, Dellago C, Frenkel D. Non-equilibrium simulations of thermally induced electric fields in water. The Journal of Chemical Physics. 2016;144(22). doi:10.1063/1.4953036
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[15]
2016 | Journal Article | IST-REx-ID: 10381 | OA
Bachmann SJ, Kotar J, Parolini L, et al. Melting transition in lipid vesicles functionalised by mobile DNA linkers. Soft Matter. 2016;12(37):7804-7817. doi:10.1039/c6sm01515h
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[14]
2016 | Journal Article | IST-REx-ID: 10378 | OA
Šarić A, Buell AK, Meisl G, et al. Physical determinants of the self-replication of protein fibrils. Nature Physics. 2016;12(9):874-880. doi:10.1038/nphys3828
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[13]
2014 | Journal Article | IST-REx-ID: 10382 | OA
Šarić A, Chebaro YC, Knowles TPJ, Frenkel D. Crucial role of nonspecific interactions in amyloid nucleation. Proceedings of the National Academy of Sciences. 2014;111(50):17869-17874. doi:10.1073/pnas.1410159111
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
[12]
2014 | Journal Article | IST-REx-ID: 10383 | OA
Mallory SA, Šarić A, Valeriani C, Cacciuto A. Anomalous thermomechanical properties of a self-propelled colloidal fluid. Physical Review E. 2014;89(5). doi:10.1103/physreve.89.052303
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[11]
2013 | Journal Article | IST-REx-ID: 10384 | OA
Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 2013;111(24). doi:10.1103/physrevlett.111.245702
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 10386
Šarić A, Cacciuto A. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 2013;9(29). doi:10.1039/c3sm50188d
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[9]
2013 | Journal Article | IST-REx-ID: 10385
Napoli JA, Šarić A, Cacciuto A. Collapsing nanoparticle-laden nanotubes. Soft Matter. 2013;9(37):8881-8886. doi:10.1039/c3sm51495a
View | DOI
 
[8]
2012 | Journal Article | IST-REx-ID: 10387 | OA
Šarić A, Cacciuto A. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 2012;109(18). doi:10.1103/physrevlett.109.188101
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 10388 | OA
Šarić A, Cacciuto A. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 2012;108(11). doi:10.1103/physrevlett.108.118101
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[6]
2011 | Journal Article | IST-REx-ID: 10389 | OA
Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 2011;7(18). doi:10.1039/c1sm05773a
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[5]
2010 | Journal Article | IST-REx-ID: 10128
Šarić A, Hrenar T, Mališ M, Došlić N. Quantum mechanical study of secondary structure formation in protected dipeptides. Physical Chemistry Chemical Physics. 2010;12(18):4678-4685. doi:10.1039/b923041f
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[4]
2010 | Journal Article | IST-REx-ID: 10127 | OA
Šarić A, Cacciuto A. Particle self-assembly on soft elastic shells. Soft Matter. 2010;7(5):1874-1878. doi:10.1039/c0sm01143f
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[3]
2010 | Journal Article | IST-REx-ID: 10390 | OA
Šarić A, Bozorgui B, Cacciuto A. Packing of soft asymmetric dumbbells. The Journal of Physical Chemistry B. 2010;115(22):7182-7189. doi:10.1021/jp107545w
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[2]
2010 | Journal Article | IST-REx-ID: 10391 | OA
Šarić A, Pàmies JC, Cacciuto A. Effective elasticity of a flexible filament bound to a deformable cylindrical surface. Physical Review Letters. 2010;104(22). doi:10.1103/physrevlett.104.226101
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 
[1]
2008 | Journal Article | IST-REx-ID: 10392
Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes. Organometallics. 2008;27(3):394-401. doi:10.1021/om700916f
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