Anđela Šarić
Saric Group
69 Publications
2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17460 |
Vanhille-Campos, Christian Eduardo, et al. “Self-Organization of Mortal Filaments and Its Role in Bacterial Division Ring Formation.” Nature Physics, Springer Nature, 2024, doi:10.1038/s41567-024-02597-8.
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2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17239 |
Garcia-Sacristan, Clara, et al. “In Operando Imaging Electrostatic-Driven Disassembly and Reassembly of Collagen Nanostructures.” ACS Nano, American Chemical Society, 2024, doi:10.1021/acsnano.4c03839.
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2024 | Published | Journal Article | IST-REx-ID: 18072 |
Hernandez-Armendariz, Alberto, et al. “A Liquid-like Coat Mediates Chromosome Clustering during Mitotic Exit.” Molecular Cell, vol. 84, no. 17, Cell Press, 2024, p. P3254–3270.E9, doi:10.1016/j.molcel.2024.07.022.
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2024 | Published | Journal Article | IST-REx-ID: 14844 |
Azadbakht, Ali, et al. “Nonadditivity in Interactions between Three Membrane-Wrapped Colloidal Spheres.” Biophysical Journal, vol. 123, no. 3, Elsevier, 2024, pp. 307–16, doi:10.1016/j.bpj.2023.12.020.
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2024 | Published | Journal Article | IST-REx-ID: 15001 |
Curk, Samo, et al. “Self-Replication of Aβ42 Aggregates Occurs on Small and Isolated Fibril Sites.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 7, e2220075121, Proceedings of the National Academy of Sciences, 2024, doi:10.1073/pnas.2220075121.
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2024 | Published | Journal Article | IST-REx-ID: 15116 |
Giubertoni, Giulia, et al. “Elucidating the Role of Water in Collagen Self-Assembly by Isotopically Modulating Collagen Hydration.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 11, e2313162121, Proceedings of the National Academy of Sciences, 2024, doi:10.1073/pnas.2313162121.
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2024 | Published | Journal Article | IST-REx-ID: 18526 |
Weiner, Ethan, et al. “Endosomal Membrane Budding Patterns in Plants.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 44, e2409407121, National Academy of Sciences, 2024, doi:10.1073/pnas.2409407121.
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2023 | Published | Journal Article | IST-REx-ID: 12708 |
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
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2023 | Published | Journal Article | IST-REx-ID: 12756 |
Hurtig, Fredrik, et al. “The Patterned Assembly and Stepwise Vps4-Mediated Disassembly of Composite ESCRT-III Polymers Drives Archaeal Cell Division.” Science Advances, vol. 9, no. 11, eade5224, American Association for the Advancement of Science, 2023, doi:10.1126/sciadv.ade5224.
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2023 | Published | Journal Article | IST-REx-ID: 13094 |
Azadbakht, Ali, et al. “Wrapping Pathways of Anisotropic Dumbbell Particles by Giant Unilamellar Vesicles.” Nano Letters, vol. 23, no. 10, American Chemical Society, 2023, pp. 4267–4273, doi:10.1021/acs.nanolett.3c00375.
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2023 | Published | Journal Article | IST-REx-ID: 13237
Michaels, Thomas C. T., et al. “Amyloid Formation as a Protein Phase Transition.” Nature Reviews Physics, vol. 5, Springer Nature, 2023, pp. 379–397, doi:10.1038/s42254-023-00598-9.
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2023 | Published | Journal Article | IST-REx-ID: 13971 |
Grober, Daniel, et al. “Unconventional Colloidal Aggregation in Chiral Bacterial Baths.” Nature Physics, vol. 19, Springer Nature, 2023, pp. 1680–88, doi:10.1038/s41567-023-02136-x.
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2023 | Research Data | IST-REx-ID: 14472 |
Vanhille-Campos, Christian Eduardo, and Anđela Šarić. Stress Granules Plug and Stabilize Damaged Endolysosomal Membranes. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:14472.
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2023 | Published | Journal Article | IST-REx-ID: 14610 |
Bussi, Claudio, et al. “Stress Granules Plug and Stabilize Damaged Endolysosomal Membranes.” Nature, vol. 623, Springer Nature, 2023, pp. 1062–69, doi:10.1038/s41586-023-06726-w.
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2022 | Published | Journal Article | IST-REx-ID: 11400 |
Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating Binary Mixtures with Specific Interactions.” The Journal of Chemical Physics, vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:10.1063/5.0087769.
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2022 | Published | Journal Article | IST-REx-ID: 12108 |
Meadowcroft, Billie, et al. “Mechanochemical Rules for Shape-Shifting Filaments That Remodel Membranes.” Physical Review Letters, vol. 129, no. 26, 268101, American Physical Society, 2022, doi:10.1103/PhysRevLett.129.268101.
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2022 | Published | Journal Article | IST-REx-ID: 12152 |
Jiang, Xiuyun, et al. “Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments.” PLOS Computational Biology, vol. 18, no. 10, e1010586, Public Library of Science, 2022, doi:10.1371/journal.pcbi.1010586.
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2022 | Published | Journal Article | IST-REx-ID: 12251 |
Weiffert, Tanja, et al. “Influence of Denaturants on Amyloid Β42 Aggregation Kinetics.” Frontiers in Neuroscience, vol. 16, 943355, Frontiers Media, 2022, doi:10.3389/fnins.2022.943355.
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2022 | Published | Journal Article | IST-REx-ID: 11841 |
Toprakcioglu, Zenon, et al. “Adsorption Free Energy Predicts Amyloid Protein Nucleation Rates.” Proceedings of the National Academy of Sciences of the United States of America, vol. 119, no. 31, e2109718119, Proceedings of the National Academy of Sciences, 2022, doi:10.1073/pnas.2109718119.
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2021 | Published | Journal Article | IST-REx-ID: 10124 |
Palaia, Ivan, et al. “Durotaxis of Passive Nanoparticles on Elastic Membranes.” ACS Nano, American Chemical Society, 2021, doi:10.1021/acsnano.1c02777 .
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2021 | Submitted | Preprint | IST-REx-ID: 10125 |
Harker-Kirschneck, L., et al. “Physical Mechanisms of ESCRT-III-Driven Cell Division in Archaea.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2021.03.23.436559.
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2021 | Published | Journal Article | IST-REx-ID: 10337
Zeng, Longhui, et al. “PLCγ1 Promotes Phase Separation of T Cell Signaling Components.” Journal of Cell Biology, vol. 220, no. 6, e202009154, Rockefeller University Press, 2021, doi:10.1083/jcb.202009154.
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2021 | Published | Journal Article | IST-REx-ID: 10338 |
Davis, Luke K., et al. “Physical Modeling of Multivalent Interactions in the Nuclear Pore Complex.” Biophysical Journal, vol. 120, no. 9, Elsevier, 2021, pp. 1565–77, doi:10.1016/j.bpj.2021.01.039.
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2021 | Published | Journal Article | IST-REx-ID: 10340 |
Paraschiv, Alexandru, et al. “Influence of Membrane-Cortex Linkers on the Extrusion of Membrane Tubes.” Biophysical Journal, vol. 120, no. 4, Cell Press, 2021, pp. 598–606, doi:10.1016/j.bpj.2020.12.028.
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2021 | Published | Journal Article | IST-REx-ID: 10339 |
Vanhille-Campos, Christian, and Anđela Šarić. “Modelling the Dynamics of Vesicle Reshaping and Scission under Osmotic Shocks.” Soft Matter, vol. 17, no. 14, Royal Society of Chemistry, 2021, pp. 3798–806, doi:10.1039/d0sm02012e.
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2020 | Published | Journal Article | IST-REx-ID: 10336 |
Krausser, Johannes, et al. “Physical Mechanisms of Amyloid Nucleation on Fluid Membranes.” Proceedings of the National Academy of Sciences, vol. 117, no. 52, National Academy of Sciences, 2020, pp. 33090–98, doi:10.1073/pnas.2007694117.
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2020 | Published | Journal Article | IST-REx-ID: 10347 |
Michaels, Thomas C. T., et al. “Thermodynamic and Kinetic Design Principles for Amyloid-Aggregation Inhibitors.” Proceedings of the National Academy of Sciences, vol. 117, no. 39, National Academy of Sciences, 2020, pp. 24251–57, doi:10.1073/pnas.2006684117.
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2020 | Published | Journal Article | IST-REx-ID: 10348 |
Pfitzner, Anna-Katharina, et al. “An ESCRT-III Polymerization Sequence Drives Membrane Deformation and Fission.” Cell, vol. 182, no. 5, Elsevier, 2020, p. 1140–1155.e18, doi:10.1016/j.cell.2020.07.021.
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2020 | Published | Journal Article | IST-REx-ID: 10349 |
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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2020 | Published | Journal Article | IST-REx-ID: 10350 |
Dear, Alexander J., et al. “Identification of On- and off-Pathway Oligomers in Amyloid Fibril Formation.” Chemical Science, vol. 11, no. 24, Royal Society of Chemistry, 2020, pp. 6236–47, doi:10.1039/c9sc06501f.
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2020 | Published | Journal Article | IST-REx-ID: 10351 |
Michaels, Thomas C. T., et al. “Dynamics of Oligomer Populations Formed during the Aggregation of Alzheimer’s Aβ42 Peptide.” Nature Chemistry, vol. 12, no. 5, Springer Nature, 2020, pp. 445–51, doi:10.1038/s41557-020-0452-1.
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2020 | Published | Journal Article | IST-REx-ID: 10352 |
Davis, Luke K., et al. “Intrinsically Disordered Nuclear Pore Proteins Show Ideal-Polymer Morphologies and Dynamics.” Physical Review E, vol. 101, no. 2, 022420, American Physical Society, 2020, doi:10.1103/physreve.101.022420.
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2020 | Published | Journal Article | IST-REx-ID: 10353 |
Paraschiv, Alexandru, et al. “Dynamic Clustering Regulates Activity of Mechanosensitive Membrane Channels.” Physical Review Letters, vol. 124, no. 4, 048102, American Physical Society, 2020, doi:10.1103/physrevlett.124.048102.
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2020 | Published | Journal Article | IST-REx-ID: 10342 |
Tian, Xiaohe, et al. “On the Shuttling across the Blood-Brain Barrier via Tubule Formation: Mechanism and Cargo Avidity Bias.” Science Advances, vol. 6, no. 48, eabc4397, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.abc4397.
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2020 | Published | Journal Article | IST-REx-ID: 10344 |
Forster, Joel C., et al. “Exploring the Design Rules for Efficient Membrane-Reshaping Nanostructures.” Physical Review Letters, vol. 125, no. 22, 228101, American Physical Society, 2020, doi:10.1103/physrevlett.125.228101.
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2020 | Published | Journal Article | IST-REx-ID: 10341 |
Debets, V. E., et al. “Characterising the Diffusion of Biological Nanoparticles on Fluid and Cross-Linked Membranes.” Soft Matter, vol. 16, no. 47, Royal Society of Chemistry, 2020, pp. 10628–39, doi:10.1039/d0sm00712a.
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2020 | Published | Journal Article | IST-REx-ID: 10346 |
Hafner, Anne E., et al. “Modeling Fibrillogenesis of Collagen-Mimetic Molecules.” Biophysical Journal, vol. 119, no. 9, Cell Press, 2020, pp. 1791–99, doi:10.1016/j.bpj.2020.09.013.
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2019 | Published | Journal Article | IST-REx-ID: 10354 |
Harker-Kirschneck, Lena, et al. “Changes in ESCRT-III Filament Geometry Drive Membrane Remodelling and Fission in Silico.” BMC Biology, vol. 17, no. 1, 82, Springer Nature, 2019, doi:10.1186/s12915-019-0700-2.
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2019 | Published | Journal Article | IST-REx-ID: 10355 |
Hafner, Anne E., et al. “Minimal Coarse-Grained Models for Molecular Self-Organisation in Biology.” Current Opinion in Structural Biology, vol. 58, Elsevier, 2019, pp. 43–52, doi:10.1016/j.sbi.2019.05.018.
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2018 | Published | Journal Article | IST-REx-ID: 10357
Dear, Alexander J., et al. “Statistical Mechanics of Globular Oligomer Formation by Protein Molecules.” The Journal of Physical Chemistry B, vol. 122, no. 49, American Chemical Society, 2018, pp. 11721–30, doi:10.1021/acs.jpcb.8b07805.
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2018 | Published | Journal Article | IST-REx-ID: 10358 |
Michaels, Thomas C. T., et al. “Reaction Rate Theory for Supramolecular Kinetics: Application to Protein Aggregation.” Molecular Physics, vol. 116, no. 21–22, Taylor & Francis, 2018, pp. 3055–65, doi:10.1080/00268976.2018.1474280.
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2018 | Published | Journal Article | IST-REx-ID: 10359 |
Curk, Tine, et al. “Controlling Cargo Trafficking in Multicomponent Membranes.” Nano Letters, vol. 18, no. 9, American Chemical Society, 2018, pp. 5350–56, doi:10.1021/acs.nanolett.8b00786.
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2018 | Published | Journal Article | IST-REx-ID: 10360
Cohen, Samuel I. A., et al. “Distinct Thermodynamic Signatures of Oligomer Generation in the Aggregation of the Amyloid-β Peptide.” Nature Chemistry, vol. 10, no. 5, Springer Nature, 2018, pp. 523–31, doi:10.1038/s41557-018-0023-x.
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2018 | Published | Journal Article | IST-REx-ID: 10361
Michaels, Thomas C. T., et al. “Chemical Kinetics for Bridging Molecular Mechanisms and Macroscopic Measurements of Amyloid Fibril Formation.” Annual Review of Physical Chemistry, vol. 69, no. 1, Annual Reviews, 2018, pp. 273–98, doi:10.1146/annurev-physchem-050317-021322.
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2018 | Published | Journal Article | IST-REx-ID: 10362
Fisher, Patrick D. Ellis, et al. “A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.” ACS Nano, vol. 12, no. 2, American Chemical Society, 2018, pp. 1508–18, doi:10.1021/acsnano.7b08044.
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2017 | Published | Journal Article | IST-REx-ID: 10126 |
Vahid Belarghou, Afshin, et al. “Curvature Mediated Interactions in Highly Curved Membranes.” Biophysical Journal, vol. 112, no. 3, 391a, Elsevier , 2017, doi:10.1016/j.bpj.2016.11.2123.
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2017 | Published | Journal Article | IST-REx-ID: 10369 |
Simunovic, Mijo, et al. “Long-Range Organization of Membrane-Curving Proteins.” ACS Central Science, vol. 3, no. 12, American Chemical Society, 2017, pp. 1246–53, doi:10.1021/acscentsci.7b00392.
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2017 | Published | Journal Article | IST-REx-ID: 10370 |
Helle, Sebastian Carsten Johannes, et al. “Mechanical Force Induces Mitochondrial Fission.” ELife, vol. 6, e30292, eLife Sciences Publications, 2017, doi:10.7554/elife.30292.
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2017 | Published | Journal Article | IST-REx-ID: 10373 |
Wirnsberger, Peter, et al. “Numerical Evidence for Thermally Induced Monopoles.” Proceedings of the National Academy of Sciences, vol. 114, no. 19, National Academy of Sciences, 2017, pp. 4911–14, doi:10.1073/pnas.1621494114.
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2017 | Published | Journal Article | IST-REx-ID: 10374 |
Meisl, Georg, et al. “Scaling Behaviour and Rate-Determining Steps in Filamentous Self-Assembly.” Chemical Science, vol. 8, no. 10, Royal Society of Chemistry, 2017, pp. 7087–97, doi:10.1039/c7sc01965c.
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2017 | Published | Journal Article | IST-REx-ID: 10375 |
Vahid, Afshin, et al. “Curvature Variation Controls Particle Aggregation on Fluid Vesicles.” Soft Matter, vol. 13, no. 28, Royal Society of Chemistry, 2017, pp. 4924–30, doi:10.1039/c7sm00433h.
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2016 | Published | Journal Article | IST-REx-ID: 10376 |
Šarić, Anđela, et al. “Kinetics of Spontaneous Filament Nucleation via Oligomers: Insights from Theory and Simulation.” The Journal of Chemical Physics, vol. 145, no. 21, 211926, American Institute of Physics, 2016, doi:10.1063/1.4965040.
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2016 | Published | Journal Article | IST-REx-ID: 10377 |
van der Wel, Casper, et al. “Lipid Membrane-Mediated Attraction between Curvature Inducing Objects.” Scientific Reports, vol. 6, no. 1, 32825, Springer Nature, 2016, doi:10.1038/srep32825.
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2016 | Published | Journal Article | IST-REx-ID: 10378 |
Šarić, Anđela, et al. “Physical Determinants of the Self-Replication of Protein Fibrils.” Nature Physics, vol. 12, no. 9, Springer Nature, 2016, pp. 874–80, doi:10.1038/nphys3828.
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2016 | Published | Journal Article | IST-REx-ID: 10380 |
Wirnsberger, P., et al. “Non-Equilibrium Simulations of Thermally Induced Electric Fields in Water.” The Journal of Chemical Physics, vol. 144, no. 22, 224102, American Institute of Physics, 2016, doi:10.1063/1.4953036.
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2016 | Published | Journal Article | IST-REx-ID: 10381 |
Bachmann, Stephan Jan, et al. “Melting Transition in Lipid Vesicles Functionalised by Mobile DNA Linkers.” Soft Matter, vol. 12, no. 37, Royal Society of Chemistry, 2016, pp. 7804–17, doi:10.1039/c6sm01515h.
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2014 | Published | Journal Article | IST-REx-ID: 10382 |
Šarić, Anđela, et al. “Crucial Role of Nonspecific Interactions in Amyloid Nucleation.” Proceedings of the National Academy of Sciences, vol. 111, no. 50, National Academy of Sciences, 2014, pp. 17869–74, doi:10.1073/pnas.1410159111.
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2014 | Published | Journal Article | IST-REx-ID: 10383 |
Mallory, S. A., et al. “Anomalous Thermomechanical Properties of a Self-Propelled Colloidal Fluid.” Physical Review E, vol. 89, no. 5, 052303, American Physical Society, 2014, doi:10.1103/physreve.89.052303.
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2013 | Published | Journal Article | IST-REx-ID: 10384 |
Mognetti, B. M., et al. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters, vol. 111, no. 24, 245702, American Physical Society, 2013, doi:10.1103/physrevlett.111.245702.
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2013 | Published | Journal Article | IST-REx-ID: 10385
Napoli, Joseph A., et al. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter, vol. 9, no. 37, Royal Society of Chemistry, 2013, pp. 8881–86, doi:10.1039/c3sm51495a.
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2013 | Published | Journal Article | IST-REx-ID: 10386
Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter, vol. 9, no. 29, 6677, Royal Society of Chemistry, 2013, doi:10.1039/c3sm50188d.
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2012 | Published | Journal Article | IST-REx-ID: 10387 |
Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters, vol. 109, no. 18, 188101, American Physical Society, 2012, doi:10.1103/physrevlett.109.188101.
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2012 | Published | Journal Article | IST-REx-ID: 10388 |
Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters, vol. 108, no. 11, 118101, American Physical Society, 2012, doi:10.1103/physrevlett.108.118101.
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2011 | Published | Journal Article | IST-REx-ID: 10389 |
Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” Soft Matter, vol. 7, no. 18, 8324, Royal Society of Chemistry, 2011, doi:10.1039/c1sm05773a.
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2010 | Published | Journal Article | IST-REx-ID: 10127 |
Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic Shells.” Soft Matter, vol. 7, no. 5, Royal Society of Chemistry (RSC), 2010, pp. 1874–78, doi:10.1039/c0sm01143f.
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2010 | Published | Journal Article | IST-REx-ID: 10128
Šarić, Anđela, et al. “Quantum Mechanical Study of Secondary Structure Formation in Protected Dipeptides.” Physical Chemistry Chemical Physics, vol. 12, no. 18, Royal Society of Chemistry , 2010, pp. 4678–85, doi:10.1039/b923041f.
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2010 | Published | Journal Article | IST-REx-ID: 10390 |
Šarić, Anđela, et al. “Packing of Soft Asymmetric Dumbbells.” The Journal of Physical Chemistry B, vol. 115, no. 22, American Chemical Society, 2010, pp. 7182–89, doi:10.1021/jp107545w.
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2010 | Published | Journal Article | IST-REx-ID: 10391 |
Šarić, Anđela, et al. “Effective Elasticity of a Flexible Filament Bound to a Deformable Cylindrical Surface.” Physical Review Letters, vol. 104, no. 22, 226101, American Physical Society, 2010, doi:10.1103/physrevlett.104.226101.
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2008 | Published | Journal Article | IST-REx-ID: 10392
Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.” Organometallics, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401, doi:10.1021/om700916f.
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69 Publications
2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17460 |
Vanhille-Campos, Christian Eduardo, et al. “Self-Organization of Mortal Filaments and Its Role in Bacterial Division Ring Formation.” Nature Physics, Springer Nature, 2024, doi:10.1038/s41567-024-02597-8.
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2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17239 |
Garcia-Sacristan, Clara, et al. “In Operando Imaging Electrostatic-Driven Disassembly and Reassembly of Collagen Nanostructures.” ACS Nano, American Chemical Society, 2024, doi:10.1021/acsnano.4c03839.
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2024 | Published | Journal Article | IST-REx-ID: 18072 |
Hernandez-Armendariz, Alberto, et al. “A Liquid-like Coat Mediates Chromosome Clustering during Mitotic Exit.” Molecular Cell, vol. 84, no. 17, Cell Press, 2024, p. P3254–3270.E9, doi:10.1016/j.molcel.2024.07.022.
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2024 | Published | Journal Article | IST-REx-ID: 14844 |
Azadbakht, Ali, et al. “Nonadditivity in Interactions between Three Membrane-Wrapped Colloidal Spheres.” Biophysical Journal, vol. 123, no. 3, Elsevier, 2024, pp. 307–16, doi:10.1016/j.bpj.2023.12.020.
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2024 | Published | Journal Article | IST-REx-ID: 15001 |
Curk, Samo, et al. “Self-Replication of Aβ42 Aggregates Occurs on Small and Isolated Fibril Sites.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 7, e2220075121, Proceedings of the National Academy of Sciences, 2024, doi:10.1073/pnas.2220075121.
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2024 | Published | Journal Article | IST-REx-ID: 15116 |
Giubertoni, Giulia, et al. “Elucidating the Role of Water in Collagen Self-Assembly by Isotopically Modulating Collagen Hydration.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 11, e2313162121, Proceedings of the National Academy of Sciences, 2024, doi:10.1073/pnas.2313162121.
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2024 | Published | Journal Article | IST-REx-ID: 18526 |
Weiner, Ethan, et al. “Endosomal Membrane Budding Patterns in Plants.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 44, e2409407121, National Academy of Sciences, 2024, doi:10.1073/pnas.2409407121.
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2023 | Published | Journal Article | IST-REx-ID: 12708 |
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
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2023 | Published | Journal Article | IST-REx-ID: 12756 |
Hurtig, Fredrik, et al. “The Patterned Assembly and Stepwise Vps4-Mediated Disassembly of Composite ESCRT-III Polymers Drives Archaeal Cell Division.” Science Advances, vol. 9, no. 11, eade5224, American Association for the Advancement of Science, 2023, doi:10.1126/sciadv.ade5224.
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2023 | Published | Journal Article | IST-REx-ID: 13094 |
Azadbakht, Ali, et al. “Wrapping Pathways of Anisotropic Dumbbell Particles by Giant Unilamellar Vesicles.” Nano Letters, vol. 23, no. 10, American Chemical Society, 2023, pp. 4267–4273, doi:10.1021/acs.nanolett.3c00375.
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2023 | Published | Journal Article | IST-REx-ID: 13237
Michaels, Thomas C. T., et al. “Amyloid Formation as a Protein Phase Transition.” Nature Reviews Physics, vol. 5, Springer Nature, 2023, pp. 379–397, doi:10.1038/s42254-023-00598-9.
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2023 | Published | Journal Article | IST-REx-ID: 13971 |
Grober, Daniel, et al. “Unconventional Colloidal Aggregation in Chiral Bacterial Baths.” Nature Physics, vol. 19, Springer Nature, 2023, pp. 1680–88, doi:10.1038/s41567-023-02136-x.
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2023 | Research Data | IST-REx-ID: 14472 |
Vanhille-Campos, Christian Eduardo, and Anđela Šarić. Stress Granules Plug and Stabilize Damaged Endolysosomal Membranes. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:14472.
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2023 | Published | Journal Article | IST-REx-ID: 14610 |
Bussi, Claudio, et al. “Stress Granules Plug and Stabilize Damaged Endolysosomal Membranes.” Nature, vol. 623, Springer Nature, 2023, pp. 1062–69, doi:10.1038/s41586-023-06726-w.
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2022 | Published | Journal Article | IST-REx-ID: 11400 |
Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating Binary Mixtures with Specific Interactions.” The Journal of Chemical Physics, vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:10.1063/5.0087769.
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2022 | Published | Journal Article | IST-REx-ID: 12108 |
Meadowcroft, Billie, et al. “Mechanochemical Rules for Shape-Shifting Filaments That Remodel Membranes.” Physical Review Letters, vol. 129, no. 26, 268101, American Physical Society, 2022, doi:10.1103/PhysRevLett.129.268101.
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2022 | Published | Journal Article | IST-REx-ID: 12152 |
Jiang, Xiuyun, et al. “Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments.” PLOS Computational Biology, vol. 18, no. 10, e1010586, Public Library of Science, 2022, doi:10.1371/journal.pcbi.1010586.
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2022 | Published | Journal Article | IST-REx-ID: 12251 |
Weiffert, Tanja, et al. “Influence of Denaturants on Amyloid Β42 Aggregation Kinetics.” Frontiers in Neuroscience, vol. 16, 943355, Frontiers Media, 2022, doi:10.3389/fnins.2022.943355.
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2022 | Published | Journal Article | IST-REx-ID: 11841 |
Toprakcioglu, Zenon, et al. “Adsorption Free Energy Predicts Amyloid Protein Nucleation Rates.” Proceedings of the National Academy of Sciences of the United States of America, vol. 119, no. 31, e2109718119, Proceedings of the National Academy of Sciences, 2022, doi:10.1073/pnas.2109718119.
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2021 | Published | Journal Article | IST-REx-ID: 10124 |
Palaia, Ivan, et al. “Durotaxis of Passive Nanoparticles on Elastic Membranes.” ACS Nano, American Chemical Society, 2021, doi:10.1021/acsnano.1c02777 .
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2021 | Submitted | Preprint | IST-REx-ID: 10125 |
Harker-Kirschneck, L., et al. “Physical Mechanisms of ESCRT-III-Driven Cell Division in Archaea.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2021.03.23.436559.
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2021 | Published | Journal Article | IST-REx-ID: 10337
Zeng, Longhui, et al. “PLCγ1 Promotes Phase Separation of T Cell Signaling Components.” Journal of Cell Biology, vol. 220, no. 6, e202009154, Rockefeller University Press, 2021, doi:10.1083/jcb.202009154.
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2021 | Published | Journal Article | IST-REx-ID: 10338 |
Davis, Luke K., et al. “Physical Modeling of Multivalent Interactions in the Nuclear Pore Complex.” Biophysical Journal, vol. 120, no. 9, Elsevier, 2021, pp. 1565–77, doi:10.1016/j.bpj.2021.01.039.
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2021 | Published | Journal Article | IST-REx-ID: 10340 |
Paraschiv, Alexandru, et al. “Influence of Membrane-Cortex Linkers on the Extrusion of Membrane Tubes.” Biophysical Journal, vol. 120, no. 4, Cell Press, 2021, pp. 598–606, doi:10.1016/j.bpj.2020.12.028.
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2021 | Published | Journal Article | IST-REx-ID: 10339 |
Vanhille-Campos, Christian, and Anđela Šarić. “Modelling the Dynamics of Vesicle Reshaping and Scission under Osmotic Shocks.” Soft Matter, vol. 17, no. 14, Royal Society of Chemistry, 2021, pp. 3798–806, doi:10.1039/d0sm02012e.
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2020 | Published | Journal Article | IST-REx-ID: 10336 |
Krausser, Johannes, et al. “Physical Mechanisms of Amyloid Nucleation on Fluid Membranes.” Proceedings of the National Academy of Sciences, vol. 117, no. 52, National Academy of Sciences, 2020, pp. 33090–98, doi:10.1073/pnas.2007694117.
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2020 | Published | Journal Article | IST-REx-ID: 10347 |
Michaels, Thomas C. T., et al. “Thermodynamic and Kinetic Design Principles for Amyloid-Aggregation Inhibitors.” Proceedings of the National Academy of Sciences, vol. 117, no. 39, National Academy of Sciences, 2020, pp. 24251–57, doi:10.1073/pnas.2006684117.
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2020 | Published | Journal Article | IST-REx-ID: 10348 |
Pfitzner, Anna-Katharina, et al. “An ESCRT-III Polymerization Sequence Drives Membrane Deformation and Fission.” Cell, vol. 182, no. 5, Elsevier, 2020, p. 1140–1155.e18, doi:10.1016/j.cell.2020.07.021.
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2020 | Published | Journal Article | IST-REx-ID: 10349 |
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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2020 | Published | Journal Article | IST-REx-ID: 10350 |
Dear, Alexander J., et al. “Identification of On- and off-Pathway Oligomers in Amyloid Fibril Formation.” Chemical Science, vol. 11, no. 24, Royal Society of Chemistry, 2020, pp. 6236–47, doi:10.1039/c9sc06501f.
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2020 | Published | Journal Article | IST-REx-ID: 10351 |
Michaels, Thomas C. T., et al. “Dynamics of Oligomer Populations Formed during the Aggregation of Alzheimer’s Aβ42 Peptide.” Nature Chemistry, vol. 12, no. 5, Springer Nature, 2020, pp. 445–51, doi:10.1038/s41557-020-0452-1.
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2020 | Published | Journal Article | IST-REx-ID: 10352 |
Davis, Luke K., et al. “Intrinsically Disordered Nuclear Pore Proteins Show Ideal-Polymer Morphologies and Dynamics.” Physical Review E, vol. 101, no. 2, 022420, American Physical Society, 2020, doi:10.1103/physreve.101.022420.
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2020 | Published | Journal Article | IST-REx-ID: 10353 |
Paraschiv, Alexandru, et al. “Dynamic Clustering Regulates Activity of Mechanosensitive Membrane Channels.” Physical Review Letters, vol. 124, no. 4, 048102, American Physical Society, 2020, doi:10.1103/physrevlett.124.048102.
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2020 | Published | Journal Article | IST-REx-ID: 10342 |
Tian, Xiaohe, et al. “On the Shuttling across the Blood-Brain Barrier via Tubule Formation: Mechanism and Cargo Avidity Bias.” Science Advances, vol. 6, no. 48, eabc4397, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.abc4397.
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2020 | Published | Journal Article | IST-REx-ID: 10344 |
Forster, Joel C., et al. “Exploring the Design Rules for Efficient Membrane-Reshaping Nanostructures.” Physical Review Letters, vol. 125, no. 22, 228101, American Physical Society, 2020, doi:10.1103/physrevlett.125.228101.
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2020 | Published | Journal Article | IST-REx-ID: 10341 |
Debets, V. E., et al. “Characterising the Diffusion of Biological Nanoparticles on Fluid and Cross-Linked Membranes.” Soft Matter, vol. 16, no. 47, Royal Society of Chemistry, 2020, pp. 10628–39, doi:10.1039/d0sm00712a.
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2020 | Published | Journal Article | IST-REx-ID: 10346 |
Hafner, Anne E., et al. “Modeling Fibrillogenesis of Collagen-Mimetic Molecules.” Biophysical Journal, vol. 119, no. 9, Cell Press, 2020, pp. 1791–99, doi:10.1016/j.bpj.2020.09.013.
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2019 | Published | Journal Article | IST-REx-ID: 10354 |
Harker-Kirschneck, Lena, et al. “Changes in ESCRT-III Filament Geometry Drive Membrane Remodelling and Fission in Silico.” BMC Biology, vol. 17, no. 1, 82, Springer Nature, 2019, doi:10.1186/s12915-019-0700-2.
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2019 | Published | Journal Article | IST-REx-ID: 10355 |
Hafner, Anne E., et al. “Minimal Coarse-Grained Models for Molecular Self-Organisation in Biology.” Current Opinion in Structural Biology, vol. 58, Elsevier, 2019, pp. 43–52, doi:10.1016/j.sbi.2019.05.018.
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2018 | Published | Journal Article | IST-REx-ID: 10357
Dear, Alexander J., et al. “Statistical Mechanics of Globular Oligomer Formation by Protein Molecules.” The Journal of Physical Chemistry B, vol. 122, no. 49, American Chemical Society, 2018, pp. 11721–30, doi:10.1021/acs.jpcb.8b07805.
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2018 | Published | Journal Article | IST-REx-ID: 10358 |
Michaels, Thomas C. T., et al. “Reaction Rate Theory for Supramolecular Kinetics: Application to Protein Aggregation.” Molecular Physics, vol. 116, no. 21–22, Taylor & Francis, 2018, pp. 3055–65, doi:10.1080/00268976.2018.1474280.
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| arXiv
2018 | Published | Journal Article | IST-REx-ID: 10359 |
Curk, Tine, et al. “Controlling Cargo Trafficking in Multicomponent Membranes.” Nano Letters, vol. 18, no. 9, American Chemical Society, 2018, pp. 5350–56, doi:10.1021/acs.nanolett.8b00786.
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2018 | Published | Journal Article | IST-REx-ID: 10360
Cohen, Samuel I. A., et al. “Distinct Thermodynamic Signatures of Oligomer Generation in the Aggregation of the Amyloid-β Peptide.” Nature Chemistry, vol. 10, no. 5, Springer Nature, 2018, pp. 523–31, doi:10.1038/s41557-018-0023-x.
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2018 | Published | Journal Article | IST-REx-ID: 10361
Michaels, Thomas C. T., et al. “Chemical Kinetics for Bridging Molecular Mechanisms and Macroscopic Measurements of Amyloid Fibril Formation.” Annual Review of Physical Chemistry, vol. 69, no. 1, Annual Reviews, 2018, pp. 273–98, doi:10.1146/annurev-physchem-050317-021322.
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2018 | Published | Journal Article | IST-REx-ID: 10362
Fisher, Patrick D. Ellis, et al. “A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.” ACS Nano, vol. 12, no. 2, American Chemical Society, 2018, pp. 1508–18, doi:10.1021/acsnano.7b08044.
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2017 | Published | Journal Article | IST-REx-ID: 10126 |
Vahid Belarghou, Afshin, et al. “Curvature Mediated Interactions in Highly Curved Membranes.” Biophysical Journal, vol. 112, no. 3, 391a, Elsevier , 2017, doi:10.1016/j.bpj.2016.11.2123.
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2017 | Published | Journal Article | IST-REx-ID: 10369 |
Simunovic, Mijo, et al. “Long-Range Organization of Membrane-Curving Proteins.” ACS Central Science, vol. 3, no. 12, American Chemical Society, 2017, pp. 1246–53, doi:10.1021/acscentsci.7b00392.
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2017 | Published | Journal Article | IST-REx-ID: 10370 |
Helle, Sebastian Carsten Johannes, et al. “Mechanical Force Induces Mitochondrial Fission.” ELife, vol. 6, e30292, eLife Sciences Publications, 2017, doi:10.7554/elife.30292.
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2017 | Published | Journal Article | IST-REx-ID: 10373 |
Wirnsberger, Peter, et al. “Numerical Evidence for Thermally Induced Monopoles.” Proceedings of the National Academy of Sciences, vol. 114, no. 19, National Academy of Sciences, 2017, pp. 4911–14, doi:10.1073/pnas.1621494114.
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| arXiv
2017 | Published | Journal Article | IST-REx-ID: 10374 |
Meisl, Georg, et al. “Scaling Behaviour and Rate-Determining Steps in Filamentous Self-Assembly.” Chemical Science, vol. 8, no. 10, Royal Society of Chemistry, 2017, pp. 7087–97, doi:10.1039/c7sc01965c.
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2017 | Published | Journal Article | IST-REx-ID: 10375 |
Vahid, Afshin, et al. “Curvature Variation Controls Particle Aggregation on Fluid Vesicles.” Soft Matter, vol. 13, no. 28, Royal Society of Chemistry, 2017, pp. 4924–30, doi:10.1039/c7sm00433h.
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| arXiv
2016 | Published | Journal Article | IST-REx-ID: 10376 |
Šarić, Anđela, et al. “Kinetics of Spontaneous Filament Nucleation via Oligomers: Insights from Theory and Simulation.” The Journal of Chemical Physics, vol. 145, no. 21, 211926, American Institute of Physics, 2016, doi:10.1063/1.4965040.
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2016 | Published | Journal Article | IST-REx-ID: 10377 |
van der Wel, Casper, et al. “Lipid Membrane-Mediated Attraction between Curvature Inducing Objects.” Scientific Reports, vol. 6, no. 1, 32825, Springer Nature, 2016, doi:10.1038/srep32825.
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2016 | Published | Journal Article | IST-REx-ID: 10378 |
Šarić, Anđela, et al. “Physical Determinants of the Self-Replication of Protein Fibrils.” Nature Physics, vol. 12, no. 9, Springer Nature, 2016, pp. 874–80, doi:10.1038/nphys3828.
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2016 | Published | Journal Article | IST-REx-ID: 10380 |
Wirnsberger, P., et al. “Non-Equilibrium Simulations of Thermally Induced Electric Fields in Water.” The Journal of Chemical Physics, vol. 144, no. 22, 224102, American Institute of Physics, 2016, doi:10.1063/1.4953036.
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2016 | Published | Journal Article | IST-REx-ID: 10381 |
Bachmann, Stephan Jan, et al. “Melting Transition in Lipid Vesicles Functionalised by Mobile DNA Linkers.” Soft Matter, vol. 12, no. 37, Royal Society of Chemistry, 2016, pp. 7804–17, doi:10.1039/c6sm01515h.
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2014 | Published | Journal Article | IST-REx-ID: 10382 |
Šarić, Anđela, et al. “Crucial Role of Nonspecific Interactions in Amyloid Nucleation.” Proceedings of the National Academy of Sciences, vol. 111, no. 50, National Academy of Sciences, 2014, pp. 17869–74, doi:10.1073/pnas.1410159111.
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| arXiv
2014 | Published | Journal Article | IST-REx-ID: 10383 |
Mallory, S. A., et al. “Anomalous Thermomechanical Properties of a Self-Propelled Colloidal Fluid.” Physical Review E, vol. 89, no. 5, 052303, American Physical Society, 2014, doi:10.1103/physreve.89.052303.
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2013 | Published | Journal Article | IST-REx-ID: 10384 |
Mognetti, B. M., et al. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters, vol. 111, no. 24, 245702, American Physical Society, 2013, doi:10.1103/physrevlett.111.245702.
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2013 | Published | Journal Article | IST-REx-ID: 10385
Napoli, Joseph A., et al. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter, vol. 9, no. 37, Royal Society of Chemistry, 2013, pp. 8881–86, doi:10.1039/c3sm51495a.
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2013 | Published | Journal Article | IST-REx-ID: 10386
Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter, vol. 9, no. 29, 6677, Royal Society of Chemistry, 2013, doi:10.1039/c3sm50188d.
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2012 | Published | Journal Article | IST-REx-ID: 10387 |
Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters, vol. 109, no. 18, 188101, American Physical Society, 2012, doi:10.1103/physrevlett.109.188101.
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2012 | Published | Journal Article | IST-REx-ID: 10388 |
Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters, vol. 108, no. 11, 118101, American Physical Society, 2012, doi:10.1103/physrevlett.108.118101.
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| arXiv
2011 | Published | Journal Article | IST-REx-ID: 10389 |
Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” Soft Matter, vol. 7, no. 18, 8324, Royal Society of Chemistry, 2011, doi:10.1039/c1sm05773a.
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2010 | Published | Journal Article | IST-REx-ID: 10127 |
Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic Shells.” Soft Matter, vol. 7, no. 5, Royal Society of Chemistry (RSC), 2010, pp. 1874–78, doi:10.1039/c0sm01143f.
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| arXiv
2010 | Published | Journal Article | IST-REx-ID: 10128
Šarić, Anđela, et al. “Quantum Mechanical Study of Secondary Structure Formation in Protected Dipeptides.” Physical Chemistry Chemical Physics, vol. 12, no. 18, Royal Society of Chemistry , 2010, pp. 4678–85, doi:10.1039/b923041f.
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| PubMed | Europe PMC
2010 | Published | Journal Article | IST-REx-ID: 10390 |
Šarić, Anđela, et al. “Packing of Soft Asymmetric Dumbbells.” The Journal of Physical Chemistry B, vol. 115, no. 22, American Chemical Society, 2010, pp. 7182–89, doi:10.1021/jp107545w.
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| arXiv
2010 | Published | Journal Article | IST-REx-ID: 10391 |
Šarić, Anđela, et al. “Effective Elasticity of a Flexible Filament Bound to a Deformable Cylindrical Surface.” Physical Review Letters, vol. 104, no. 22, 226101, American Physical Society, 2010, doi:10.1103/physrevlett.104.226101.
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| arXiv
2008 | Published | Journal Article | IST-REx-ID: 10392
Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.” Organometallics, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401, doi:10.1021/om700916f.
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