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5762 Publications
2018 | Published | Journal Article | IST-REx-ID: 5914 |

Tetrode recording from the hippocampus of behaving mice coupled with four-point-irradiation closed-loop optogenetics: A technique to study the contribution of Hippocampal SWR events to learning
D.K. Rangel Guerrero, J.G. Donnett, J.L. Csicsvari, K. Kovács, ENeuro 5 (2018).
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D.K. Rangel Guerrero, J.G. Donnett, J.L. Csicsvari, K. Kovács, ENeuro 5 (2018).
2018 | Published | Journal Article | IST-REx-ID: 15 |

Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells
M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.
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M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.
2018 | Published | Journal Article | IST-REx-ID: 3 |

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition
E. Deliu, N. Arecco, J. Morandell, C. Dotter, X. Contreras, C. Girardot, E. Käsper, A. Kozlova, K. Kishi, I. Chiaradia, K. Noh, G. Novarino, Nature Neuroscience 21 (2018) 1717–1727.
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E. Deliu, N. Arecco, J. Morandell, C. Dotter, X. Contreras, C. Girardot, E. Käsper, A. Kozlova, K. Kishi, I. Chiaradia, K. Noh, G. Novarino, Nature Neuroscience 21 (2018) 1717–1727.
2018 | Published | Thesis | IST-REx-ID: 50 |

Optogenetic Frizzled 7 reveals a permissive function of Wnt/PCP signaling in directed mesenchymal cell migration
D. Capek, Optogenetic Frizzled 7 Reveals a Permissive Function of Wnt/PCP Signaling in Directed Mesenchymal Cell Migration, Institute of Science and Technology Austria, 2018.
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D. Capek, Optogenetic Frizzled 7 Reveals a Permissive Function of Wnt/PCP Signaling in Directed Mesenchymal Cell Migration, Institute of Science and Technology Austria, 2018.
2018 | Published | Journal Article | IST-REx-ID: 47
Transporters and mechanisms of hormone transport in arabidopsis
R. Abualia, E. Benková, B. Lacombe, Advances in Botanical Research 87 (2018) 115–138.
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R. Abualia, E. Benková, B. Lacombe, Advances in Botanical Research 87 (2018) 115–138.
2018 | Published | Thesis | IST-REx-ID: 6263 |

Genetic determinants of antibiotic resistance evolution
M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, Institute of Science and Technology Austria, 2018.
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M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, Institute of Science and Technology Austria, 2018.
2018 | Published | Thesis | IST-REx-ID: 51 |

From the left to the right: A tale of asymmetries, environments, and hippocampal development
M.J. Case, From the Left to the Right: A Tale of Asymmetries, Environments, and Hippocampal Development, Institute of Science and Technology Austria, 2018.
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M.J. Case, From the Left to the Right: A Tale of Asymmetries, Environments, and Hippocampal Development, Institute of Science and Technology Austria, 2018.
2018 | Published | Journal Article | IST-REx-ID: 412 |

A functional study of AUXILIN LIKE1 and 2 two putative clathrin uncoating factors in Arabidopsis
M. Adamowski, M. Narasimhan, U. Kania, M. Glanc, G. De Jaeger, J. Friml, The Plant Cell 30 (2018) 700–716.
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M. Adamowski, M. Narasimhan, U. Kania, M. Glanc, G. De Jaeger, J. Friml, The Plant Cell 30 (2018) 700–716.
2018 | Published | Thesis | IST-REx-ID: 6266 |

Design and characterization of methods and biological components to realize synthetic neurotransmission
C. Mckenzie, Design and Characterization of Methods and Biological Components to Realize Synthetic Neurotransmission , Institute of Science and Technology Austria, 2018.
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C. Mckenzie, Design and Characterization of Methods and Biological Components to Realize Synthetic Neurotransmission , Institute of Science and Technology Austria, 2018.
2018 | Published | Thesis | IST-REx-ID: 26 |

The influence of sequence context on the evolution of bacterial gene expression
M. Steinrück, The Influence of Sequence Context on the Evolution of Bacterial Gene Expression, Institute of Science and Technology Austria, 2018.
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M. Steinrück, The Influence of Sequence Context on the Evolution of Bacterial Gene Expression, Institute of Science and Technology Austria, 2018.
2018 | Published | Journal Article | IST-REx-ID: 402 |

Lymph node blood vessels provide exit routes for metastatic tumor cell dissemination in mice
M. Brown, F.P. Assen, A.F. Leithner, J. Abe, H. Schachner, G. Asfour, Z. Bagó Horváth, J. Stein, P. Uhrin, M.K. Sixt, D. Kerjaschki, Science 359 (2018) 1408–1411.
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M. Brown, F.P. Assen, A.F. Leithner, J. Abe, H. Schachner, G. Asfour, Z. Bagó Horváth, J. Stein, P. Uhrin, M.K. Sixt, D. Kerjaschki, Science 359 (2018) 1408–1411.
2018 | Published | Journal Article | IST-REx-ID: 422 |

Relaminarization by steady modification of the streamwise velocity profile in a pipe
J. Kühnen, D. Scarselli, M. Schaner, B. Hof, Flow Turbulence and Combustion 100 (2018) 919–942.
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J. Kühnen, D. Scarselli, M. Schaner, B. Hof, Flow Turbulence and Combustion 100 (2018) 919–942.
2018 | Published | Journal Article | IST-REx-ID: 461 |

Destabilizing turbulence in pipe flow
J. Kühnen, B. Song, D. Scarselli, N.B. Budanur, M. Riedl, A. Willis, M. Avila, B. Hof, Nature Physics 14 (2018) 386–390.
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J. Kühnen, B. Song, D. Scarselli, N.B. Budanur, M. Riedl, A. Willis, M. Avila, B. Hof, Nature Physics 14 (2018) 386–390.
2017 | Published | Conference Paper | IST-REx-ID: 13160 |

Index appearance record for transforming Rabin automata into parity automata
J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, in:, Tools and Algorithms for the Construction and Analysis of Systems, Springer, 2017, pp. 443–460.
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J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, in:, Tools and Algorithms for the Construction and Analysis of Systems, Springer, 2017, pp. 443–460.
2017 | Published | Journal Article | IST-REx-ID: 1367 |

Adaptive physically based models in computer graphics
P. Manteaux, C. Wojtan, R. Narain, S. Redon, F. Faure, M. Cani, Computer Graphics Forum 36 (2017) 312–337.
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P. Manteaux, C. Wojtan, R. Narain, S. Redon, F. Faure, M. Cani, Computer Graphics Forum 36 (2017) 312–337.
2017 | Published | Journal Article | IST-REx-ID: 1084
Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis
C. Fang, A.A. Nagy-Staron, M. Grafe, R. Heermann, K. Jung, S. Gebhard, T. Mascher, Molecular Microbiology 104 (2017) 16–31.
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C. Fang, A.A. Nagy-Staron, M. Grafe, R. Heermann, K. Jung, S. Gebhard, T. Mascher, Molecular Microbiology 104 (2017) 16–31.
2017 | Published | Journal Article | IST-REx-ID: 1086 |

Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide
M. Di Giglio, M. Muttenthaler, K. Harpsøe, Z. Liutkeviciute, P. Keov, T. Eder, T. Rattei, S. Arrowsmith, S. Wray, A. Marek, T. Elbert, P. Alewood, D. Gloriam, C. Gruber, Scientific Reports 7 (2017) 41002.
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M. Di Giglio, M. Muttenthaler, K. Harpsøe, Z. Liutkeviciute, P. Keov, T. Eder, T. Rattei, S. Arrowsmith, S. Wray, A. Marek, T. Elbert, P. Alewood, D. Gloriam, C. Gruber, Scientific Reports 7 (2017) 41002.
2017 | Published | Conference Paper | IST-REx-ID: 1112
An application of stochastic differential equations to evolutionary algorithms
T. Paixao, J. Pérez Heredia, in:, Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, ACM, 2017, pp. 3–11.
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T. Paixao, J. Pérez Heredia, in:, Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, ACM, 2017, pp. 3–11.
2017 | Published | Journal Article | IST-REx-ID: 1146
Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels
W. Sun, M.-Z. Zhai, D. Li, Y. Zhou, N. Chen, M. Guo, S. Zhou, Clinical Nutrition 36 (2017) 1136–1142.
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W. Sun, M.-Z. Zhai, D. Li, Y. Zhou, N. Chen, M. Guo, S. Zhou, Clinical Nutrition 36 (2017) 1136–1142.
2017 | Published | Journal Article | IST-REx-ID: 1168 |

D inf s optimality in copula models
E. Perrone, A. Rappold, W. Müller, Statistical Methods and Applications 26 (2017) 403–418.
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E. Perrone, A. Rappold, W. Müller, Statistical Methods and Applications 26 (2017) 403–418.
2017 | Published | Conference Paper | IST-REx-ID: 1176 |

Towards practical attacks on Argon2i and balloon hashing
J.F. Alwen, J. Blocki, in:, IEEE, 2017.
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J.F. Alwen, J. Blocki, in:, IEEE, 2017.
2017 | Published | Book Chapter | IST-REx-ID: 444
Structure of respiratory complex I: “Minimal” bacterial and “de luxe” mammalian versions
L.A. Sazanov, in:, M. Wikström (Ed.), Mechanisms of Primary Energy Transduction in Biology , Royal Society of Chemistry, 2017, pp. 25–59.
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L.A. Sazanov, in:, M. Wikström (Ed.), Mechanisms of Primary Energy Transduction in Biology , Royal Society of Chemistry, 2017, pp. 25–59.
2017 | Published | Journal Article | IST-REx-ID: 453 |

Ensembles of bidirectional kinesin Cin8 produce additive forces in both directions of movement
T. Fallesen, J. Roostalu, C.F. Düllberg, G. Pruessner, T. Surrey, Biophysical Journal 113 (2017) 2055–2067.
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T. Fallesen, J. Roostalu, C.F. Düllberg, G. Pruessner, T. Surrey, Biophysical Journal 113 (2017) 2055–2067.
2017 | Published | Journal Article | IST-REx-ID: 459 |

Invasive Ameisen in Europa: Wie sie sich ausbreiten und die heimische Fauna verändern
S. Cremer, Rundgespräche Forum Ökologie 46 (2017) 105–116.
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S. Cremer, Rundgespräche Forum Ökologie 46 (2017) 105–116.
2017 | Published | Journal Article | IST-REx-ID: 481 |

Planar matchings for weighted straight skeletons
T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
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T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
2017 | Published | Conference Paper | IST-REx-ID: 487
Towards unlicensed cellular networks in TV white spaces
G. Baig, B. Radunovic, D.-A. Alistarh, M. Balkwill, T. Karagiannis, L. Qiu, in:, Proceedings of the 2017 13th International Conference on Emerging Networking EXperiments and Technologies, ACM, 2017, pp. 2–14.
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G. Baig, B. Radunovic, D.-A. Alistarh, M. Balkwill, T. Karagiannis, L. Qiu, in:, Proceedings of the 2017 13th International Conference on Emerging Networking EXperiments and Technologies, ACM, 2017, pp. 2–14.
2017 | Research Data | IST-REx-ID: 5561 |

Graph matching problems for annotating C. Elegans
D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017).
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D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017).
2017 | Research Data | IST-REx-ID: 5563 |

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, (2017).
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M. Lukacisin, (2017).
2017 | Research Data | IST-REx-ID: 5567 |

Immunological synapse DC-Tcells
A.F. Leithner, (2017).
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A.F. Leithner, (2017).
2017 | Published | Journal Article | IST-REx-ID: 557 |

AAV2 mediated transduction of the mouse retina after optic nerve injury
R. Nickells, H. Schmitt, M.E. Maes, C. Schlamp, Investigative Ophthalmology and Visual Science 58 (2017) 6091–6104.
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R. Nickells, H. Schmitt, M.E. Maes, C. Schlamp, Investigative Ophthalmology and Visual Science 58 (2017) 6091–6104.
2017 | Research Data | IST-REx-ID: 5570 |

Forward migration indexes
R. Hauschild, (2017).
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R. Hauschild, (2017).
2017 | Published | Journal Article | IST-REx-ID: 558
Specificity of oral immune priming in the red flour beetle Tribolium castaneum
M. Futo, M. Sell, M. Kutzer, J. Kurtz, Biology Letters 13 (2017).
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M. Futo, M. Sell, M. Kutzer, J. Kurtz, Biology Letters 13 (2017).
2017 | Published | Journal Article | IST-REx-ID: 572 |

Control of endogenous auxin levels in plant root development
D. Olatunji, D. Geelen, I. Verstraeten, International Journal of Molecular Sciences 18 (2017).
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D. Olatunji, D. Geelen, I. Verstraeten, International Journal of Molecular Sciences 18 (2017).
2017 | Published | Conference Paper | IST-REx-ID: 609 |

Moderately hard functions: Definition, instantiations, and applications
J.F. Alwen, B. Tackmann, in:, Y. Kalai, L. Reyzin (Eds.), Springer, 2017, pp. 493–526.
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J.F. Alwen, B. Tackmann, in:, Y. Kalai, L. Reyzin (Eds.), Springer, 2017, pp. 493–526.
2017 | Published | Journal Article | IST-REx-ID: 1211 |

Unstable manifolds of relative periodic orbits in the symmetry reduced state space of the Kuramoto–Sivashinsky system
N.B. Budanur, P. Cvitanović, Journal of Statistical Physics 167 (2017) 636–655.
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N.B. Budanur, P. Cvitanović, Journal of Statistical Physics 167 (2017) 636–655.
2017 | Published | Journal Article | IST-REx-ID: 1228 |

Are reprogrammed cells a useful tool for studying dopamine dysfunction in psychotic disorders? A review of the current evidence
U. Sauerzopf, R. Sacco, G. Novarino, M. Niello, A. Weidenauer, N. Praschak Rieder, H. Sitte, M. Willeit, European Journal of Neuroscience 45 (2017) 45–57.
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U. Sauerzopf, R. Sacco, G. Novarino, M. Niello, A. Weidenauer, N. Praschak Rieder, H. Sitte, M. Willeit, European Journal of Neuroscience 45 (2017) 45–57.
2017 | Published | Conference Abstract | IST-REx-ID: 12905 |

Scientific Computing at IST Austria
A. Schlögl, J. Kiss, in:, AHPC17 – Austrian HPC Meeting 2017, FSP Scientific Computing, 2017, p. 28.
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A. Schlögl, J. Kiss, in:, AHPC17 – Austrian HPC Meeting 2017, FSP Scientific Computing, 2017, p. 28.
2017 | Published | Journal Article | IST-REx-ID: 7360 |

A synthetic mammalian therapeutic gene circuit for sensing and suppressing inflammation
A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, R. Jerala, Molecular Therapy 25 (2017) 102–119.
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A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, R. Jerala, Molecular Therapy 25 (2017) 102–119.
2017 | Published | Journal Article | IST-REx-ID: 737
A new topology on the universal path space
Z. Virk, A. Zastrow, Topology and Its Applications 231 (2017) 186–196.
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Z. Virk, A. Zastrow, Topology and Its Applications 231 (2017) 186–196.
2017 | Published | Journal Article | IST-REx-ID: 743
Preface of the special issue in memoriam Helmut Veith
G. Gottlob, T.A. Henzinger, G. Weißenbacher, Formal Methods in System Design 51 (2017) 267–269.
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G. Gottlob, T.A. Henzinger, G. Weißenbacher, Formal Methods in System Design 51 (2017) 267–269.
2017 | Published | Journal Article | IST-REx-ID: 747 |

Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus
E. Brǎiloiu, M. Mcguire, S. Shuler, E. Deliu, J. Barr, M. Abood, G. Brailoiu, Neuroscience 365 (2017) 23–32.
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E. Brǎiloiu, M. Mcguire, S. Shuler, E. Deliu, J. Barr, M. Abood, G. Brailoiu, Neuroscience 365 (2017) 23–32.
2017 | Published | Conference Paper | IST-REx-ID: 750
Optimal geospatial volunteer allocation needs realistic distances
J. Pielorz, M. Prandtstetter, M. Straub, C. Lampert, in:, 2017 IEEE International Conference on Big Data, IEEE, 2017, pp. 3760–3763.
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J. Pielorz, M. Prandtstetter, M. Straub, C. Lampert, in:, 2017 IEEE International Conference on Big Data, IEEE, 2017, pp. 3760–3763.
2017 | Published | Journal Article | IST-REx-ID: 751 |

A moving source of matrix components is essential for De Novo basement membrane formation
Y. Matsubayashi, A. Louani, A. Dragu, B. Sanchez Sanchez, E. Serna Morales, L. Yolland, A. György, G. Vizcay, R. Fleck, J. Heddleston, T. Chew, D.E. Siekhaus, B. Stramer, Current Biology 27 (2017) 3526–3534e.4.
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Y. Matsubayashi, A. Louani, A. Dragu, B. Sanchez Sanchez, E. Serna Morales, L. Yolland, A. György, G. Vizcay, R. Fleck, J. Heddleston, T. Chew, D.E. Siekhaus, B. Stramer, Current Biology 27 (2017) 3526–3534e.4.
2017 | Published | Journal Article | IST-REx-ID: 797
Photonenblockade aufgelöst
J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.
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J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.
2017 | Published | Journal Article | IST-REx-ID: 805
The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development
S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931.
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S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931.
2017 | Published | Book Chapter | IST-REx-ID: 84
Computational topology for structural molecular biology
H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, Taylor & Francis, 2017, pp. 1709–1735.
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H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, Taylor & Francis, 2017, pp. 1709–1735.
2017 | Published | Book Chapter | IST-REx-ID: 623
Extracerebral dysfunction in animal models of autism spectrum disorder
E. Hill Yardin, S. Mckeown, G. Novarino, A. Grabrucker, in:, M. Schmeisser, T. Boekers (Eds.), Translational Anatomy and Cell Biology of Autism Spectrum Disorder, Springer, 2017, pp. 159–187.
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E. Hill Yardin, S. Mckeown, G. Novarino, A. Grabrucker, in:, M. Schmeisser, T. Boekers (Eds.), Translational Anatomy and Cell Biology of Autism Spectrum Disorder, Springer, 2017, pp. 159–187.
2017 | Published | Journal Article | IST-REx-ID: 627 |

Dietary menthol-induced TRPM8 activation enhances WAT “browning” and ameliorates diet-induced obesity
C. Jiang, M.-Z. Zhai, D. Yan, D. Li, C. Li, Y. Zhang, L. Xiao, D. Xiong, Q. Deng, W. Sun, Oncotarget 8 (2017) 75114–75126.
[Published Version]
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C. Jiang, M.-Z. Zhai, D. Yan, D. Li, C. Li, Y. Zhang, L. Xiao, D. Xiong, Q. Deng, W. Sun, Oncotarget 8 (2017) 75114–75126.
2017 | Published | Book Chapter | IST-REx-ID: 629
Reconstitution of protein dynamics involved in bacterial cell division
M. Loose, K. Zieske, P. Schwille, in:, Prokaryotic Cytoskeletons, Springer, 2017, pp. 419–444.
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| PubMed | Europe PMC
M. Loose, K. Zieske, P. Schwille, in:, Prokaryotic Cytoskeletons, Springer, 2017, pp. 419–444.
2017 | Published | Conference Paper | IST-REx-ID: 630 |

Biosignals standards and FHIR: The way to go
S. Sauermann, V. David, A. Schlögl, R. Egelkraut, M. Frohner, B. Pohn, P. Urbauer, A. Mense, in:, IOS Press, 2017, pp. 356–362.
[Published Version]
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S. Sauermann, V. David, A. Schlögl, R. Egelkraut, M. Frohner, B. Pohn, P. Urbauer, A. Mense, in:, IOS Press, 2017, pp. 356–362.