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376 Publications


2017 | Conference Paper | IST-REx-ID: 646 | OA
Kuske, J., Swoboda, P., & Petra, S. (2017). A novel convex relaxation for non binary discrete tomography. In F. Lauze, Y. Dong, & A. Bjorholm Dahl (Eds.) (Vol. 10302, pp. 235–246). Presented at the SSVM: Scale Space and Variational Methods in Computer Vision, Kolding, Denmark: Springer. https://doi.org/10.1007/978-3-319-58771-4_19
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2017 | Journal Article | IST-REx-ID: 698 | OA
Wang, Y., Nagarajan, M., Uhler, C., & Shivashankar, G. (2017). Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. American Society for Cell Biology. https://doi.org/10.1091/mbc.E16-12-0825
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 722 | OA
Morris, E., Griffiths, M., Golebiowska, A., Mairhofer, S., Burr Hersey, J., Goh, T., … Bennett, M. (2017). Shaping 3D root system architecture. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2017.06.043
[Submitted Version] View | Files available | DOI | PubMed | Europe PMC
 

2017 | Journal Article | IST-REx-ID: 7729
Yengo, L., Zhu, Z., Wray, N. R., Weir, B. S., Yang, J., Robinson, M. R., & Visscher, P. M. (2017). Detection and quantification of inbreeding depression for complex traits from SNP data. Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1621096114
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2017 | Journal Article | IST-REx-ID: 7731
Lloyd-Jones, L. R., Robinson, M. R., Moser, G., Zeng, J., Beleza, S., Barsh, G. S., … Visscher, P. M. (2017). Inference on the genetic basis of eye and skin color in an admixed population via Bayesian linear mixed models. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.116.193383
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2017 | Journal Article | IST-REx-ID: 7757
Rocks, J. W., Pashine, N., Bischofberger, I., Goodrich, C. P., Liu, A. J., & Nagel, S. R. (2017). Designing allostery-inspired response in mechanical networks. Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1612139114
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2017 | Journal Article | IST-REx-ID: 817 | OA
Turoňová, B., Schur, F. K., Wan, W., & Briggs, J. (2017). Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å. Journal of Structural Biology. Academic Press. https://doi.org/10.1016/j.jsb.2017.07.007
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 8240 | OA
Singer, J., Grunt, T. W., Jensen-Jarolim, E., & Singer, J. (2017). Long term storage in liquid nitrogen leads to only minor phenotypic and gene expression changes in the mammary carcinoma model cell line BT474. Oncotarget. Impact Journals. https://doi.org/10.18632/oncotarget.16623
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2017 | Journal Article | IST-REx-ID: 8446
Fraga, H., Arnaud, C., Gauto, D. F., Audin, M., Kurauskas, V., Macek, P., … Schanda, P. (2017). Solid‐state NMR H–N–(C)–H and H–N–C–C 3D/4D correlation experiments for resonance assignment of large proteins. ChemPhysChem. Wiley. https://doi.org/10.1002/cphc.201700572
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2017 | Journal Article | IST-REx-ID: 680 | OA
Chalk, M. J., Masset, P., Gutkin, B., & Denève, S. (2017). Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005582
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 486 | OA
Elek, O., Sumin, D., Zhang, R., Weyrich, T., Myszkowski, K., Bickel, B., … Krivanek, J. (2017). Scattering-aware texture reproduction for 3D printing. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/3130800.3130890
[Submitted Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 1074 | OA
Ringbauer, H., Coop, G., & Barton, N. H. (2017). Inferring recent demography from isolation by distance of long shared sequence blocks. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.116.196220
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 

2017 | Conference Paper | IST-REx-ID: 1002 | OA
Zhang, R., Auzinger, T., Ceylan, D., Li, W., & Bickel, B. (2017). Functionality-aware retargeting of mechanisms to 3D shapes (Vol. 36). Presented at the SIGGRAPH: Computer Graphics and Interactive Techniques, Los Angeles, CA, United States : ACM. https://doi.org/10.1145/3072959.3073710
[Submitted Version] View | Files available | DOI | WoS
 

2017 | Conference Paper | IST-REx-ID: 1001 | OA
Guseinov, R., Miguel, E., & Bickel, B. (2017). CurveUps: Shaping objects from flat plates with tension-actuated curvature (Vol. 36). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States: ACM. https://doi.org/10.1145/3072959.3073709
[Submitted Version] View | Files available | DOI | WoS
 

2017 | Journal Article | IST-REx-ID: 994 | OA
Cherepanov, I., & Lemeshko, M. (2017). Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules. Physical Review Materials. American Physical Society. https://doi.org/10.1103/PhysRevMaterials.1.035602
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 

2017 | Research Data | IST-REx-ID: 5561 | OA
Kainmueller, D., Jug, F., Rother, C., & Meyers, G. (2017). Graph matching problems for annotating C. Elegans. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:57
[Published Version] View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1088
Uhler, C., & Shivashankar, G. V. (2016). Geometric control and modeling of genome reprogramming. BioArchitecture. Taylor & Francis. https://doi.org/10.1080/19490992.2016.1201620
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2016 | Conference Paper | IST-REx-ID: 1099 | OA
Malomo, L., Pietroni, N., Bickel, B., & Cignoni, P. (2016). FlexMolds: Automatic design of flexible shells for molding (Vol. 35). Presented at the SIGGRAPH Asia: Conference and Exhibition on Computer Graphics and Interactive Techniques in Asia, Macao, China: ACM. https://doi.org/10.1145/2980179.2982397
[Submitted Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1105
Savin, C., & Tkačik, G. (2016). Estimating nonlinear neural response functions using GP priors and Kronecker methods (Vol. 29, pp. 3610–3618). Presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain: Neural Information Processing Systems.
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2016 | Conference Paper | IST-REx-ID: 1115 | OA
Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., … Schwefel, H. (2016). Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator. Presented at the CLEO: Conference on Lasers and Electro Optics, San Jose, CA, USA: IEEE. https://doi.org/10.1364/CLEO_SI.2016.SF2G.3
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2016 | Conference Paper | IST-REx-ID: 1319
Bächer, M., Hepp, B., Pece, F., Kry, P., Bickel, B., Thomaszewski, B., & Hilliges, O. (2016). DefSense: computational design of customized deformable input devices (pp. 3806–3816). Presented at the CHI: Conference on Human Factors in Computing Systems, San Jose, California, USA: ACM. https://doi.org/10.1145/2858036.2858354
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2016 | Journal Article | IST-REx-ID: 1518 | OA
Lohse, K., Chmelik, M., Martin, S., & Barton, N. H. (2016). Efficient strategies for calculating blockwise likelihoods under the coalescent. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.115.183814
[Preprint] View | Files available | DOI | PubMed | Europe PMC
 

2016 | Journal Article | IST-REx-ID: 1148
Schilling, C., Bogomolov, S., Henzinger, T. A., Podelski, A., & Ruess, J. (2016). Adaptive moment closure for parameter inference of biochemical reaction networks. Biosystems. Elsevier. https://doi.org/10.1016/j.biosystems.2016.07.005
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2016 | Conference Paper | IST-REx-ID: 5806
Biswas, R., & Bhowmick, P. (2016). On functionality of quadraginta octants of naive sphere with application to circle drawing. In Discrete Geometry for Computer Imagery (Vol. 9647, pp. 256–267). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-32360-2_20
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2016 | Book Chapter | IST-REx-ID: 5809
Biswas, R., Bhowmick, P., & Brimkov, V. E. (2016). On the connectivity and smoothness of discrete spherical circles. In Combinatorial image analysis (Vol. 9448, pp. 86–100). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-26145-4_7
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2016 | Journal Article | IST-REx-ID: 983 | OA
Potter, A., Serbyn, M., & Vishwanath, A. (2016). Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. Physical Review X. American Physical Society. https://doi.org/10.1103/PhysRevX.6.031026
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2016 | Conference Paper | IST-REx-ID: 948
Monk, T., Savin, C., & Lücke, J. (2016). Neurons equipped with intrinsic plasticity learn stimulus intensity statistics (Vol. 29, pp. 4285–4293). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spaine: Neural Information Processing Systems.
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2016 | Journal Article | IST-REx-ID: 1794 | OA
Kolmogorov, V., & Takhanov, R. (2016). Inference algorithms for pattern-based CRFs on sequence data. Algorithmica. Springer. https://doi.org/10.1007/s00453-015-0017-7
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2016 | Journal Article | IST-REx-ID: 1263 | OA
Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., … Schwefel, H. (2016). Efficient microwave to optical photon conversion: An electro-optical realization. Optica. Optica Publishing Group. https://doi.org/10.1364/OPTICA.3.000597
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2016 | Journal Article | IST-REx-ID: 14302
Stahl, E., Praetorius, F. M., de Oliveira Mann, C. C., Hopfner, K.-P., & Dietz, H. (2016). Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.6b04787
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2016 | Journal Article | IST-REx-ID: 14304
Martin, T. G., Bharat, T. A. M., Joerger, A. C., Bai, X., Praetorius, F. M., Fersht, A. R., … Scheres, S. H. W. (2016). Design of a molecular support for cryo-EM structure determination. PNAS. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1612720113
[Published Version] View | DOI | PubMed | Europe PMC
 

2016 | Research Data | IST-REx-ID: 5553 | OA
Field, D., & Ellis, T. (2016). Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:37
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 10794 | OA
Parise, F., Lygeros, J., & Ruess, J. (2015). Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study. Frontiers in Environmental Science. Frontiers. https://doi.org/10.3389/fenvs.2015.00042
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 11668 | OA
Colini-Baldeschi, R., Leonardi, S., Henzinger, M. H., & Starnberger, M. (2015). On multiple keyword sponsored search auctions with budgets. ACM Transactions on Economics and Computation. Association for Computing Machinery. https://doi.org/10.1145/2818357
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2015 | Conference Paper | IST-REx-ID: 1483 | OA
Reininghaus, J., Huber, S., Bauer, U., & Kwitt, R. (2015). A stable multi-scale kernel for topological machine learning (pp. 4741–4748). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, USA: IEEE. https://doi.org/10.1109/CVPR.2015.7299106
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2015 | Journal Article | IST-REx-ID: 1538 | OA
Ruess, J., Parise, F., Milias Argeitis, A., Khammash, M., & Lygeros, J. (2015). Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1423947112
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2015 | Book Chapter | IST-REx-ID: 1596 | OA
Fulek, R., & Radoičić, R. (2015). Vertical visibility among parallel polygons in three dimensions. In Graph Drawing and Network Visualization (Vol. 9411, pp. 373–379). Los Angeles, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-319-27261-0_31
[Submitted Version] View | Files available | DOI
 

2015 | Conference Paper | IST-REx-ID: 1625
Bermano, A., Beeler, T., Kozlov, Y., Bradley, D., Bickel, B., & Gross, M. (2015). Detailed spatio-temporal reconstruction of eyelids (Vol. 34). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States: ACM. https://doi.org/10.1145/2766924
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2015 | Conference Paper | IST-REx-ID: 1628 | OA
Schumacher, C., Bickel, B., Rys, J., Marschner, S., Daraio, C., & Gross, M. (2015). Microstructures to control elasticity in 3D printing (Vol. 34). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, USA: ACM. https://doi.org/10.1145/2766926
[Published Version] View | DOI | Download Published Version (ext.)
 

2015 | Conference Paper | IST-REx-ID: 1630 | OA
Guerrero, P., Jeschke, S., Wimmer, M., & Wonka, P. (2015). Learning shape placements by example (Vol. 34). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States: ACM. https://doi.org/10.1145/2766933
[Submitted Version] View | Files available | DOI
 

2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov, S., Henzinger, T. A., Podelski, A., Ruess, J., & Schilling, C. (2015). Adaptive moment closure for parameter inference of biochemical reaction networks. Presented at the CMSB: Computational Methods in Systems Biology, Nantes, France: Springer. https://doi.org/10.1007/978-3-319-23401-4_8
View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1684 | OA
Vicoso, B., & Bachtrog, D. (2015). Numerous transitions of sex chromosomes in Diptera. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.1002078
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1817 | OA
Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2015 | Journal Article | IST-REx-ID: 1861
Ruess, J., & Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation. ACM. https://doi.org/10.1145/2688906
View | DOI
 

2015 | Journal Article | IST-REx-ID: 1874
Boccara, C. N., Kjønigsen, L., Hammer, I., Bjaalie, J., Leergaard, T., & Witter, M. (2015). A three-plane architectonic atlas of the rat hippocampal region. Hippocampus. Wiley. https://doi.org/10.1002/hipo.22407
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2015 | Journal Article | IST-REx-ID: 1879 | OA
Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
[Published Version] View | Files available | DOI
 

2015 | Conference Paper | IST-REx-ID: 1992 | OA
Gupta, A., Henzinger, T. A., Radhakrishna, A., Samanta, R., & Tarrach, T. (2015). Succinct representation of concurrent trace sets (pp. 433–444). Presented at the POPL: Principles of Programming Languages, Mumbai, India: ACM. https://doi.org/10.1145/2676726.2677008
[Submitted Version] View | Files available | DOI
 

2015 | Technical Report | IST-REx-ID: 5444 | OA
Reiter, J., Makohon-Moore, A., Gerold, J., Bozic, I., Chatterjee, K., Iacobuzio-Donahue, C., … Nowak, M. (2015). Reconstructing robust phylogenies of metastatic cancers. IST Austria. https://doi.org/10.15479/AT:IST-2015-399-v1-1
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 7456
Caruntu, D., Rostamzadeh, T., Costanzo, T., Salemizadeh Parizi, S., & Caruntu, G. (2015). Solvothermal synthesis and controlled self-assembly of monodisperse titanium-based perovskite colloidal nanocrystals. Nanoscale. RSC. https://doi.org/10.1039/c5nr00737b
View | DOI | PubMed | Europe PMC
 

2015 | Journal Article | IST-REx-ID: 1793 | OA
Symonova, O., Topp, C., & Edelsbrunner, H. (2015). DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0127657
[Published Version] View | Files available | DOI
 

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