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3417 Publications


2013 | Technical Report | IST-REx-ID: 6440 | OA
Replacing competition with cooperation to achieve scalable lock-free FIFO queues
T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 1374 | OA
Infinite-state games with finitary conditions
K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
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2013 | Conference Paper | IST-REx-ID: 1385 | OA
Synthesizing multiple boolean functions using interpolation on a single proof
G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.
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2013 | Conference Paper | IST-REx-ID: 1387 | OA
Nondeterminism in the presence of a diverse or unknown future
U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.
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2013 | Thesis | IST-REx-ID: 1405 | OA
Analysis of dynamic message passing programs
D. Zufferey, Analysis of Dynamic Message Passing Programs, IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 10396 | OA
Stimfit: A fast visualization and analysis environment for cellular neurophysiology
A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013).
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2013 | Conference Paper | IST-REx-ID: 2000 | OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
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2013 | Journal Article | IST-REx-ID: 2009 | OA
Privacy-preserving data sharing for genome-wide association studies
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
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2013 | Journal Article | IST-REx-ID: 2010 | OA
Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
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2013 | Conference Paper | IST-REx-ID: 2181 | OA
Quantitative relaxation of concurrent data structures
T.A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, A. Sokolova, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 317–328.
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2013 | Conference Paper | IST-REx-ID: 2210 | OA
Reconstructing polygons from embedded straight skeletons
T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational Geometry, TU Braunschweig, 2013, pp. 95–98.
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2013 | Conference Paper | IST-REx-ID: 2237 | OA
Tree interpolation in Vampire
R. Blanc, A. Gupta, L. Kovács, B. Kragl, 8312 (2013) 173–181.
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2013 | Conference Paper | IST-REx-ID: 2243 | OA
Elementary modal logics over transitive structures
J. Michaliszyn, J. Otop, 23 (2013) 563–577.
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2013 | Conference Paper | IST-REx-ID: 2244 | OA
Untangling two systems of noncrossing curves
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
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2013 | Journal Article | IST-REx-ID: 2247 | OA
Forgiver triumphs in alternating prisoner's dilemma
B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2256 | OA
Linked (Open) Data - Bibliographische Daten im Semantic Web
P. Danowski, D. Goldfarb, V. Schaffner, W. Seidler, VÖB Mitteilungen 66 (2013) 559–587.
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2013 | Conference Paper | IST-REx-ID: 2258 | OA
Digital signatures with minimal overhead from indifferentiable random invertible functions
E. Kiltz, K.Z. Pietrzak, M. Szegedy, 8042 (2013) 571–588.
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2013 | Conference Paper | IST-REx-ID: 2259 | OA
Learning with rounding, revisited: New reduction properties and applications
J.F. Alwen, S. Krenn, K.Z. Pietrzak, D. Wichs, 8042 (2013) 57–74.
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2013 | Conference Paper | IST-REx-ID: 2260 | OA
Efficient signatures of knowledge and DAA in the standard model
D. Bernhard, G. Fuchsbauer, E. Ghadafi, 7954 (2013) 518–533.
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2013 | Journal Article | IST-REx-ID: 2264 | OA
Neural development is dependent on the function of specificity protein 2 in cell cycle progression
H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, T. Ghashghaei, Development 140 (2013) 552–561.
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2013 | Conference Paper | IST-REx-ID: 2270 | OA
Optimal Coalition Structures in Cooperative Graph Games
Y. Bachrach, P. Kohli, V. Kolmogorov, M. Zadimoghaddam, in:, AAAI Press, 2013, pp. 81–87.
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2013 | Conference Paper | IST-REx-ID: 2272 | OA
Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, International Machine Learning Society, 2013, pp. 145–153.
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2013 | Report | IST-REx-ID: 2273 | OA
Reweighted message passing revisited
V. Kolmogorov, Reweighted Message Passing Revisited, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 2274 | OA
Proofs of Space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2276 | OA
Potts model, parametric maxflow and k-submodular functions
I. Gridchyn, V. Kolmogorov, in:, IEEE, 2013, pp. 2320–2327.
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2013 | Conference Paper | IST-REx-ID: 2279 | OA
Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, 8172 (2013) 118–132.
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2013 | Journal Article | IST-REx-ID: 2280 | OA
Packing ellipsoids with overlap
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
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2013 | Journal Article | IST-REx-ID: 2282 | OA
Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly
P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, C.-P.J. Heisenberg, Nature Cell Biology 15 (2013) 1405–1414.
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2013 | Journal Article | IST-REx-ID: 2286 | OA
The force and effect of cell proliferation
P. Campinho, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 2783–2784.
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2013 | Journal Article | IST-REx-ID: 2287 | OA View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2289 | OA
Quantitative reactive modeling and verification
T.A. Henzinger, Computer Science Research and Development 28 (2013) 331–344.
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2013 | Journal Article | IST-REx-ID: 2290 | OA
ECHIDNA mediated post Golgi trafficking of auxin carriers for differential cell elongation
Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J. Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
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2013 | Conference Paper | IST-REx-ID: 2291 | OA
Cryptographically enforced RBAC
A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
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2013 | Conference Paper | IST-REx-ID: 2293 | OA
Learning to rank using privileged information
V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
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2013 | Conference Paper | IST-REx-ID: 2294 | OA
Drosophila Embryo Stage Annotation using Label Propagation
T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
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2013 | Conference Paper | IST-REx-ID: 2295 | OA View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2297 | OA
Hot topics in cold gases: A mathematical physics perspective
R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
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2013 | Conference Paper | IST-REx-ID: 2298 | OA
Local shape analysis for overlaid data structures
C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
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2013 | Journal Article | IST-REx-ID: 2299 | OA
Synthesis of AMBA AHB from formal specification: A case study
Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software Tools for Technology Transfer 15 (2013) 585–601.
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2013 | Journal Article | IST-REx-ID: 2300 | OA
Realization of stripes and slabs in two and three dimensions
A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
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2013 | Conference Paper | IST-REx-ID: 2305 | OA
Trading performance for stability in Markov decision processes
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
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2013 | Book | IST-REx-ID: 2306 | OA
(Open) Linked Data in Bibliotheken
P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
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2013 | Conference Paper | IST-REx-ID: 2327 | OA
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
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2013 | Conference Paper | IST-REx-ID: 2328 | OA
Aspect-oriented linearizability proofs
T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
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2013 | Conference Paper | IST-REx-ID: 2329 | OA
Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
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2013 | Journal Article | IST-REx-ID: 2410 | OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
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2013 | Journal Article | IST-REx-ID: 2412 | OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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2013 | Conference Paper | IST-REx-ID: 2444 | OA
Faster algorithms for Markov decision processes with low treewidth
K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.
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2013 | Conference Paper | IST-REx-ID: 2445 | OA
Efficient synthesis for concurrency by semantics-preserving transformations
P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2013, pp. 951–967.
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2013 | Conference Paper | IST-REx-ID: 2446 | OA
Automata with generalized Rabin pairs for probabilistic model checking and LTL synthesis
K. Chatterjee, A. Gaiser, J. Kretinsky, 8044 (2013) 559–575.
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2013 | Conference Paper | IST-REx-ID: 2447 | OA
Automating separation logic using SMT
R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
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2013 | Journal Article | IST-REx-ID: 2448 | OA View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2466 | OA
Highly adaptive liquid simulations on tetrahedral meshes
R. Ando, N. Thuerey, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2467 | OA
Putting holes in holey geometry: Topology change for arbitrary surfaces
G. Bernstein, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2468 | OA
Liquid surface tracking with error compensation
M. Bojsen-Hansen, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2469 | OA
Three functions of cadherins in cell adhesion
J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) R626–R633.
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2013 | Journal Article | IST-REx-ID: 2470 | OA
Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells
M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2471 | OA
Mechanism of protein kinetic stabilization by engineered disulfide crosslinks
I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2472 | OA
Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2473 | OA
Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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2013 | Conference Paper | IST-REx-ID: 2517 | OA
Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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2013 | Conference Paper | IST-REx-ID: 2518 | OA View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Conference Paper | IST-REx-ID: 2520 | OA
The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
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2013 | Journal Article | IST-REx-ID: 2698 | OA
Stability and semiclassics in self-generated fields
L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
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2013 | Conference Paper | IST-REx-ID: 2718 | OA
Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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2013 | Journal Article | IST-REx-ID: 2720 | OA
Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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2013 | Journal Article | IST-REx-ID: 2782 | OA
Local eigenvalue density for general MANOVA matrices
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
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2013 | Journal Article | IST-REx-ID: 2815 | OA
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
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2013 | Journal Article | IST-REx-ID: 2443 | OA
Defining the selectivity of processes along the auxin response chain: A study using auxin analogues
S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
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2013 | Journal Article | IST-REx-ID: 2839 | OA
Interstitial dendritic cell guidance by haptotactic chemokine gradients
M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. de Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
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2013 | Journal Article | IST-REx-ID: 2831 | OA
Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.
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2013 | Journal Article | IST-REx-ID: 2284 | OA
Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies
S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, BMC Evolutionary Biology 13 (2013).
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2013 | Journal Article | IST-REx-ID: 2277 | OA
Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, PLoS Computational Biology 9 (2013).
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2013 | Journal Article | IST-REx-ID: 2853 | OA
Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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2013 | Research Data Reference | IST-REx-ID: 9754 | OA View | Files available | DOI | Download Published Version (ext.)
 

2012 | Journal Article | IST-REx-ID: 2848 | OA
Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.
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2012 | Journal Article | IST-REx-ID: 2849 | OA
On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
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2012 | Conference Paper | IST-REx-ID: 2891 | OA
Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.
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2012 | Conference Paper | IST-REx-ID: 2903 | OA
The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
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2012 | Journal Article | IST-REx-ID: 2904 | OA
Weak multipliers for generalized van der Corput sequences
F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749.
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2012 | Conference Paper | IST-REx-ID: 2916 | OA
Interface Simulation Distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, 2012, pp. 29–42.
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2012 | Preprint | IST-REx-ID: 2928 | OA
Generalized sequential tree-reweighted message passing
V. Kolmogorov, T. Schoenemann, ArXiv (2012).
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2012 | Conference Paper | IST-REx-ID: 2930 | OA
Towards minimizing k-submodular functions
A. Huber, V. Kolmogorov, in:, Springer, 2012, pp. 451–462.
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2012 | Conference Paper | IST-REx-ID: 2936 | OA
Finite automata with time delay blocks
K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Roceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 43–52.
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2012 | Conference Paper | IST-REx-ID: 2937 | OA
Full proof cryptography: Verifiable compilation of efficient zero-knowledge protocols
J. Almeida, M. Barbosa, E. Bangerter, G. Barthe, S. Krenn, S. Béguelin, in:, Proceedings of the 2012 ACM Conference on Computer and Communications Security, ACM, 2012, pp. 488–500.
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2012 | Journal Article | IST-REx-ID: 2941 | OA
On the optimality of functionals over triangulations of Delaunay sets
N. Dolbilin, H. Edelsbrunner, O. Musin, Russian Mathematical Surveys 67 (2012) 781–783.
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2012 | Journal Article | IST-REx-ID: 2943 | OA
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
N. Hadizadeh Yazdi, C.C. Guet, R. Johnson, J. Marko, Molecular Microbiology 86 (2012) 1318–1333.
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2012 | Journal Article | IST-REx-ID: 2946 | OA
MicroRNAs associated with the different human Argonaute proteins
A. Dueck, C. Ziegler, A. Eichner, E. Berezikov, G. Meister, Nucleic Acids Research 40 (2012) 9850–9862.
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2012 | Conference Paper | IST-REx-ID: 2947 | OA
Equivalence of games with probabilistic uncertainty and partial observation games
K. Chatterjee, M. Chmelik, R. Majumdar, in:, Springer, 2012, pp. 385–399.
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2012 | Journal Article | IST-REx-ID: 2954 | OA
A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo
A. Pernia-Andrade, S. Goswami, Y. Stickler, U. Fröbe, A. Schlögl, P.M. Jonas, Biophysical Journal 103 (2012) 1429–1439.
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2012 | Conference Paper | IST-REx-ID: 2955 | OA
Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
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2012 | Conference Paper | IST-REx-ID: 2957 | OA
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
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2012 | Journal Article | IST-REx-ID: 2958 | OA
Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.
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2012 | Journal Article | IST-REx-ID: 2959 | OA
Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.
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2012 | Journal Article | IST-REx-ID: 2962 | OA
A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.
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2012 | Journal Article | IST-REx-ID: 2965 | OA
Kontext Open Access: Creative Commons
P. Danowski, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 65 (2012) 200–212.
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2012 | Journal Article | IST-REx-ID: 2966 | OA
The dynamics of male-male competition in Cardiocondyla obscurior ants
S. Cremer, M. Suefuji, A. Schrempf, J. Heinze, BMC Ecology 12 (2012).
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2012 | Journal Article | IST-REx-ID: 2968 | OA
A likelihood based comparison of population histories in a parasitoid guild
K. Lohse, N.H. Barton, G. Melika, G. Stone, Molecular Ecology 21 (2012) 4605–4617.
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2012 | Journal Article | IST-REx-ID: 2969 | OA
Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling
S. Goswami, I. Bucurenciu, P.M. Jonas, Journal of Neuroscience 32 (2012) 14294–14304.
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