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4181 Publications


2011 | Conference Paper | IST-REx-ID: 9648 | OA
Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.
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2011 | Research Data Reference | IST-REx-ID: 9762 | OA
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas), IST Austria, 10.5061/dryad.299h8.
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2011 | Thesis | IST-REx-ID: 3275 | OA
Schumann K. 2011. The role of chemotactic gradients in dendritic cell migration. Institute of Science and Technology Austria.
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2011 | Journal Article | IST-REx-ID: 3320 | OA
Nowozin S, Lampert C. 2011. Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. 6(3–4), 185–365.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar H, Barton NH. 2011. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 8(58), 720–739.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2010 | Conference Paper | IST-REx-ID: 10908 | OA
Blanc R, Henzinger TA, Hottelier T, Kovács L. 2010. ABC: Algebraic Bound Computation for loops. Logic for Programming, Artificial Intelligence, and Reasoning. LPAR: Conference on Logic for Programming, Artificial Intelligence and ReasoningLNCS vol. 6355, 103–118.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1), 37.
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2010 | Journal Article | IST-REx-ID: 3303 | OA
Weissman D, Feldman M, Fisher D. 2010. The rate of fitness-valley crossing in sexual populations. Genetics. 186(4), 1389–1410.
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
Feret J, Henzinger TA, Koeppl H, Petrov T. 2010. Lumpability abstractions of rule-based systems. MECBIC: Membrane Computing and Biologically Inspired Process Calculi, EPTCS, vol. 40, 142–161.
[Submitted Version] View | Files available | arXiv
 

2010 | Book Chapter | IST-REx-ID: 3795 | OA
Edelsbrunner H, Morozov D, Patel A. 2010.The stability of the apparent contour of an orientable 2-manifold. In: Topological Data Analysis and Visualization: Theory, Algorithms and Applications. Mathematics and Visualization, , 27–42.
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2010 | Journal Article | IST-REx-ID: 3832 | OA
Guzmán J, Jonas PM. 2010. Beyond TARPs: The growing list of auxiliary AMPAR subunits. Neuron. 66(1), 8–10.
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2010 | Conference Paper | IST-REx-ID: 3847 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. SABRE: A tool for the stochastic analysis of biochemical reaction networks. QEST: Quantitative Evaluation of Systems, 193–194.
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2010 | Conference Paper | IST-REx-ID: 3845 | OA
Henzinger TA, Hottelier T, Kovács L, Rybalchenko A. 2010. Aligators for arrays. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397, 348–356.
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2010 | Journal Article | IST-REx-ID: 3842 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. Fast adaptive uniformization of the chemical master equation. IET Systems Biology. 4(6), 441–452.
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2010 | Conference Paper | IST-REx-ID: 3858 | OA
Chatterjee K, Doyen L. 2010. The complexity of partial-observation parity games. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397, 1–14.
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2010 | Conference Paper | IST-REx-ID: 3856 | OA
Chatterjee K, Doyen L, Gimbert H, Henzinger TA. 2010. Randomness for free. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 246–257.
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2010 | Conference Paper | IST-REx-ID: 3866 | OA
Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2010. Robustness in the presence of liveness. CAV: Computer Aided Verification, LNCS, vol. 6174, 410–424.
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2010 | Journal Article | IST-REx-ID: 3868 | OA
Chatterjee K, De Alfaro L, Majumdar R, Raman V. 2010. Algorithms for game metrics. Logical Methods in Computer Science. 6(3), 1–27.
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2010 | Journal Article | IST-REx-ID: 4243 | OA
Barton NH, Etheridge A, Véber A. 2010. A new model for evolution in a spatial continuum. Electronic Journal of Probability. 15(7), 162–216.
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2010 | Book (Editor) | IST-REx-ID: 4346 | OA
Danowski P, Bergmann J eds. 2010. Handbuch Bibliothek 2.0, De Gruyter, 405p.
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2010 | Conference Paper | IST-REx-ID: 4369 | OA
Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246, 152–167.
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2010 | Journal Article | IST-REx-ID: 3776 | OA
Barton NH. 2010. Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1552), 2559–2569.
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2010 | Journal Article | IST-REx-ID: 3773 | OA
Barton NH. 2010. What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1547), 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3777 | OA
Barton NH. 2010. Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1544), 1281–1294.
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2010 | Journal Article | IST-REx-ID: 3772 | OA
Barton NH. 2010. Understanding adaptation in large populations. PLoS Genetics. 6(6), e1000987.
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2010 | Journal Article | IST-REx-ID: 3790 | OA
Diz Muñoz A, Krieg M, Bergert M, Ibarlucea Benitez I, Müller D, Paluch E, Heisenberg C-PJ. 2010. Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biology. 8(11), e1000544.
[Published Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3793 | OA
Nowozin S, Gehler P, Lampert C. 2010. On parameter learning in CRF-based approaches to object class image segmentation. ECCV: European Conference on Computer Vision, LNCS, vol. 6316, 98–111.
[Submitted Version] View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3787 | OA
Palero F, Hall S, Clark P, Johnston D, Mackenzie Dodds J, Thatje S. 2010. DNA extraction from formalin-fixed tissue: new light from the deep sea. Scientia Marina. 74(3), 465–470.
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2010 | Journal Article | IST-REx-ID: 3834 | OA
Wolf V, Goel R, Mateescu M, Henzinger TA. 2010. Solving the chemical master equation using sliding windows. BMC Systems Biology. 4(42), 1–19.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Henzinger TA, Hottelier T, Kovács L, Voronkov A. 2010. Invariant and type inference for matrices. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 163–179.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3838 | OA
Henzinger TA, Mateescu M, Mikeev L, Wolf V. 2010. Hybrid numerical solution of the chemical master equation. CMSB: Computational Methods in Systems Biology, 55–65.
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2010 | Conference Paper | IST-REx-ID: 3853 | OA
Chatterjee K, Doyen L, Edelsbrunner H, Henzinger TA, Rannou P. 2010. Mean-payoff automaton expressions. CONCUR: Concurrency Theory, LNCS, vol. 6269, 269–283.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3849 | OA
Bendich P, Edelsbrunner H, Kerber M, Patel A. 2010. Persistent homology under non-uniform error. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 | OA
Chatterjee K, Doyen L. 2010. Energy parity games. ICALP: Automata, Languages and Programming, 37th International Colloquium, LNCS, vol. 6199, 599–610.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2010 | Conference Paper | IST-REx-ID: 3860 | OA
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2010. Generalized mean-payoff and energy games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 505–516.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3864 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2010. Measuring and synthesizing systems in probabilistic environments. CAV: Computer Aided Verification, LNCS, vol. 6174, 380–395.
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2010 | Journal Article | IST-REx-ID: 3863 | OA
Berwanger D, Chatterjee K, De Wulf M, Doyen L, Henzinger TA. 2010. Strategy construction for parity games with imperfect information. Information and Computation. 208(10), 1206–1220.
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2010 | Journal Article | IST-REx-ID: 3861 | OA
Chatterjee K, Henzinger TA, Piterman N. 2010. Strategy logic. Information and Computation. 208(6), 677–693.
[Submitted Version] View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3901 | OA
Bendich P, Edelsbrunner H, Kerber M. 2010. Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. 16(6), 1251–1260.
[Submitted Version] View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 4157 | OA
Papusheva E, Heisenberg C-PJ. 2010. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 29(16), 2753–2768.
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2010 | Book Chapter | IST-REx-ID: 4339 | OA
Bergmann J, Danowski P. 2010.Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch. In: Handbuch Bibliothek 2.0. , 5–20.
[Published Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4378 | OA
Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 26–44.
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2010 | Conference Paper | IST-REx-ID: 4381 | OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible provisioning of resources in a cloud environment. CLOUD: Cloud Computing, 83–90.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4382 | OA
Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures, 263–272.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4380 | OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for cloud resources. EMSOFT: Embedded Software , 1–8.
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2010 | Conference Paper | IST-REx-ID: 4389 | OA
Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential circuits. ACSD: Application of Concurrency to System Design, 77–84.
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2010 | Conference Paper | IST-REx-ID: 4396 | OA
Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through explicit heap analysis. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013, 263–277.
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Chatterjee K, Doyen L, Henzinger TA. 2010. Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. 6(3), 1–23.
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Alur R, Cerny P. 2010. Expressiveness of streaming string transducers. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 1–12.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
Cristau J, David C, Horn F. 2010. How do we remember the past in randomised strategies? . Proceedings of GandALF 2010. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 30–39.
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2010 | Conference Paper | IST-REx-ID: 4393 | OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances. CONCUR: Concurrency Theory, LNCS, vol. 6269, 235–268.
[Submitted Version] View | Files available | DOI
 

2010 | Technical Report | IST-REx-ID: 5388 | OA
Chatterjee K, Cerny P, Henzinger TA, Radhakrishna A, Singh R. 2010. Quantitative synthesis for concurrent programs, IST Austria, 17p.
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2010 | Technical Report | IST-REx-ID: 5389 | OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances, IST Austria, 24p.
[Published Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4390 | OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations. CAV: Computer Aided Verification, LNCS, vol. 6174, 465–479.
[Submitted Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4388 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174, 665–669.
[Submitted Version] View | Files available | DOI | arXiv
 

2010 | Technical Report | IST-REx-ID: 5391 | OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations, IST Austria, 27p.
[Published Version] View | Files available | DOI
 

2010 | Technical Report | IST-REx-ID: 5390 | OA
Chatterjee K, Fijalkow N. 2010. Topological, automata-theoretic and logical characterization of finitary languages, IST Austria, 21p.
[Published Version] View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3855 | OA
Chatterjee K, Doyen L, Henzinger TA. 2010. Qualitative analysis of partially-observable Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 258–269.
[Submitted Version] View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3779 | OA
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Cryptic variation between species and the basis of hybrid performance. PLoS Biology. 8(7), e1000429.
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2010 | Conference Paper | IST-REx-ID: 3852 | OA
Chatterjee K, Majumdar R. 2010. Discounting in games across time scales. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 22–29.
[Published Version] View | Files available | DOI | arXiv
 

2010 | Conference Paper | IST-REx-ID: 4361 | OA
Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded processes. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 6014, 94–108.
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2009 | Journal Article | IST-REx-ID: 3780 | OA
Davison A, Barton NH, Clarke B. 2009. The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. 22(8), 1624–1635.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3843 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2009. Fast adaptive uniformization of the chemical master equation. HIBI: High-Performance Computational Systems Biology vol. 4, 118–127.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger TA, Jobstmann B, Wolf V. 2009. Formalisms for specifying Markovian population models. RP: Reachability Problems, LNCS, vol. 5797, 3–23.
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2009 | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger TA, Kirsch C, Marques E, Sokolova A. 2009. Distributed, modular HTL. RTSS: Real-Time Systems Symposium, 171–180.
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2009 | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Probabilistic weighted automata. CONCUR: Concurrency Theory, LNCS, vol. 5710, 244–258.
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2009 | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee K, Henzinger TA, Horn F. 2009. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 11(1), 1.
[Submitted Version] View | Files available | DOI
 

2009 | Journal Article | IST-REx-ID: 4136 | OA
Polechova J, Barton NH, Marion G. 2009. Species’ range: Adaptation in space and time. American Naturalist. 174(5), E186–E204.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2009 | Journal Article | IST-REx-ID: 4242 | OA
Barton NH, De Cara M. 2009. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 63(5), 1171–1190.
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2009 | Journal Article | IST-REx-ID: 3775 | OA
Barton NH, Coe J. 2009. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 259(2), 317–324.
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2009 | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2009. On relational interfaces. EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software. EMSOFT: Embedded Software , 67–76.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner H, Harer J. 2009. The persistent Morse complex segmentation of a 3-manifold. 3DPH: Modelling the Physiological Human, LNCS, vol. 5903, 36–50.
[Submitted Version] View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 4542 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Alternating weighted automata. FCT: Fundamentals of Computation Theory, LNCS, vol. 5699, 3–13.
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2009 | Conference Paper | IST-REx-ID: 4545 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. A survey of stochastic games with limsup and liminf objectives. ICALP: Automata, Languages and Programming, LNCS, vol. 5556, 1–15.
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. 2009. Better quality in synthesis through quantitative objectives. CAV: Computer Aided Verification, LNCS, vol. 5643, 140–156.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2009 | Technical Report | IST-REx-ID: 5393 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2009. Gist: A solver for probabilistic games, IST Austria, 12p.
[Published Version] View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5394 | OA
Chatterjee K, Henzinger TA, Horn F. 2009. Improved lower bounds for request-response and finitary Streett games, IST Austria, 11p.
[Published Version] View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5392 | OA
Chatterjee K. 2009. Probabilistic automata on infinite words: Decidability and undecidability results, IST Austria, 17p.
[Published Version] View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5395 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Qualitative analysis of partially-observable Markov decision processes, IST Austria, 20p.
[Published Version] View | Files available | DOI
 

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