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237 Publications
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2023 | Thesis | IST-REx-ID: 14641
Adaptive mutation in E. coli modulated by luxS
M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute of Science and Technology Austria, 2023.
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M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12491 |
Ultrastructural characterization of natively preserved extracellular matrix by cryo-electron tomography
B. Zens, Ultrastructural Characterization of Natively Preserved Extracellular Matrix by Cryo-Electron Tomography, Institute of Science and Technology Austria, 2023.
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B. Zens, Ultrastructural Characterization of Natively Preserved Extracellular Matrix by Cryo-Electron Tomography, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12891 |
Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic tissues
A. Schauer, Mesendoderm Formation in Zebrafish Gastrulation: The Role of Extraembryonic Tissues, Institute of Science and Technology Austria, 2023.
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A. Schauer, Mesendoderm Formation in Zebrafish Gastrulation: The Role of Extraembryonic Tissues, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12781 |
Structural and mechanistic study of bacterial complex I and its cyanobacterial ortholog
V. Kravchuk, Structural and Mechanistic Study of Bacterial Complex I and Its Cyanobacterial Ortholog, Institute of Science and Technology Austria, 2023.
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V. Kravchuk, Structural and Mechanistic Study of Bacterial Complex I and Its Cyanobacterial Ortholog, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12809 |
Plasticity in the cerebellum: What molecular mechanisms are behind physiological learning
C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are behind Physiological Learning, Institute of Science and Technology Austria, 2023.
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C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are behind Physiological Learning, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 14226 |
Generalizing medial axes with homology switches
E.R. Stephenson, Generalizing Medial Axes with Homology Switches, Institute of Science and Technology Austria, 2023.
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E.R. Stephenson, Generalizing Medial Axes with Homology Switches, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12531 |
Panoramic functional gradients across the mouse retina
K. Kirillova, Panoramic Functional Gradients across the Mouse Retina, Institute of Science and Technology Austria, 2023.
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K. Kirillova, Panoramic Functional Gradients across the Mouse Retina, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12800 |
The effect of local population structure on genetic variation at selected loci in the A. majus hybrid zone
M. Julseth, The Effect of Local Population Structure on Genetic Variation at Selected Loci in the A. Majus Hybrid Zone, Institute of Science and Technology Austria, 2023.
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M. Julseth, The Effect of Local Population Structure on Genetic Variation at Selected Loci in the A. Majus Hybrid Zone, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 14510
Mechanism of clathrin-coated vesicle formation during endocytosis in plants
N. Gnyliukh, Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants, Institute of Science and Technology Austria, 2023.
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N. Gnyliukh, Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12897 |
Inverse shape design with parametric representations: Kirchhoff Rods and parametric surface models
C. Hafner, Inverse Shape Design with Parametric Representations: Kirchhoff Rods and Parametric Surface Models, Institute of Science and Technology Austria, 2023.
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C. Hafner, Inverse Shape Design with Parametric Representations: Kirchhoff Rods and Parametric Surface Models, Institute of Science and Technology Austria, 2023.
2023 | Thesis | IST-REx-ID: 12470 |
A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy
J.M. Michalska, A Versatile Toolbox for the Comprehensive Analysis of Nervous Tissue Organization with Light Microscopy, Institute of Science and Technology Austria, 2023.
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J.M. Michalska, A Versatile Toolbox for the Comprehensive Analysis of Nervous Tissue Organization with Light Microscopy, Institute of Science and Technology Austria, 2023.
2022 | Thesis | IST-REx-ID: 12072 |
Existence and density problems in Diophantine geometry: From norm forms to Campana points
A.L. Shute, Existence and Density Problems in Diophantine Geometry: From Norm Forms to Campana Points, Institute of Science and Technology Austria, 2022.
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A.L. Shute, Existence and Density Problems in Diophantine Geometry: From Norm Forms to Campana Points, Institute of Science and Technology Austria, 2022.
2022 | Conference Paper | IST-REx-ID: 12102 |
Algorithms and hardness results for computing cores of Markov chains
A. Ahmadi, K. Chatterjee, A.K. Goharshady, T. Meggendorfer, R. Safavi Hemami, D. Zikelic, in:, 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
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A. Ahmadi, K. Chatterjee, A.K. Goharshady, T. Meggendorfer, R. Safavi Hemami, D. Zikelic, in:, 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
2022 | Journal Article | IST-REx-ID: 12307
Tangible topology through the lens of limits
B.A. Shipman, E.R. Stephenson, PRIMUS 32 (2022) 593–609.
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B.A. Shipman, E.R. Stephenson, PRIMUS 32 (2022) 593–609.
2022 | Preprint | IST-REx-ID: 12677 |
Repeated prophet inequality with near-optimal bounds
K. Chatterjee, M. Mohammadi, R.J. Saona Urmeneta, ArXiv (n.d.).
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K. Chatterjee, M. Mohammadi, R.J. Saona Urmeneta, ArXiv (n.d.).
2022 | Preprint | IST-REx-ID: 12860 |
Towards differential relational privacy and its use in question answering
S. Bombari, A. Achille, Z. Wang, Y.-X. Wang, Y. Xie, K.Y. Singh, S. Appalaraju, V. Mahadevan, S. Soatto, ArXiv (n.d.).
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S. Bombari, A. Achille, Z. Wang, Y.-X. Wang, Y. Xie, K.Y. Singh, S. Appalaraju, V. Mahadevan, S. Soatto, ArXiv (n.d.).
2022 | Conference Paper | IST-REx-ID: 11839 |
Almost-orthogonal layers for efficient general-purpose Lipschitz networks
B. Prach, C. Lampert, in:, Computer Vision – ECCV 2022, Springer Nature, 2022, pp. 350–365.
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B. Prach, C. Lampert, in:, Computer Vision – ECCV 2022, Springer Nature, 2022, pp. 350–365.
2022 | Thesis | IST-REx-ID: 11777 |
High-dimensional expansion and crossing numbers of simplicial complexes
P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology, 2022.
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P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology, 2022.
2022 | Thesis | IST-REx-ID: 11128 |
Genetic basis of flower colour as a model for adaptive evolution
L. Matejovicova, Genetic Basis of Flower Colour as a Model for Adaptive Evolution, Institute of Science and Technology Austria, 2022.
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L. Matejovicova, Genetic Basis of Flower Colour as a Model for Adaptive Evolution, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 10600 |
Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap
S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).
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S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).
2022 | Journal Article | IST-REx-ID: 10642 |
Local stability of ground states in locally gapped and weakly interacting quantum spin systems
S.J. Henheik, S. Teufel, T. Wessel, Letters in Mathematical Physics 112 (2022).
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S.J. Henheik, S. Teufel, T. Wessel, Letters in Mathematical Physics 112 (2022).
2022 | Journal Article | IST-REx-ID: 10643 |
Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk
S.J. Henheik, S. Teufel, Forum of Mathematics, Sigma 10 (2022).
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S.J. Henheik, S. Teufel, Forum of Mathematics, Sigma 10 (2022).
2022 | Journal Article | IST-REx-ID: 10623 |
The BCS critical temperature at high density
S.J. Henheik, Mathematical Physics, Analysis and Geometry 25 (2022).
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S.J. Henheik, Mathematical Physics, Analysis and Geometry 25 (2022).
2022 | Journal Article | IST-REx-ID: 10920 |
Dynamics of hole singlet-triplet qubits with large g-factor differences
D. Jirovec, P.M. Mutter, A.C. Hofmann, A. Crippa, M. Rychetsky, D.L. Craig, J. Kukucka, F. Martins, A. Ballabio, N. Ares, D. Chrastina, G. Isella, G. Burkard, G. Katsaros, Physical Review Letters 128 (2022).
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D. Jirovec, P.M. Mutter, A.C. Hofmann, A. Crippa, M. Rychetsky, D.L. Craig, J. Kukucka, F. Martins, A. Ballabio, N. Ares, D. Chrastina, G. Isella, G. Burkard, G. Katsaros, Physical Review Letters 128 (2022).
2022 | Journal Article | IST-REx-ID: 10925 |
On the wavenumber-frequency spectrum of the wall pressure fluctuations in turbulent channel flow
B. Yang, Z. Yang, Journal of Fluid Mechanics 937 (2022).
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B. Yang, Z. Yang, Journal of Fluid Mechanics 937 (2022).
2022 | Journal Article | IST-REx-ID: 11135 |
On the operator norm of a Hermitian random matrix with correlated entries
J. Reker, Random Matrices: Theory and Applications 11 (2022).
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J. Reker, Random Matrices: Theory and Applications 11 (2022).
2022 | Conference Paper | IST-REx-ID: 11459 |
Differential cost analysis with simultaneous potentials and anti-potentials
D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
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D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
2022 | Journal Article | IST-REx-ID: 11448 |
Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
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L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
2022 | Journal Article | IST-REx-ID: 11447 |
Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
2022 | Journal Article | IST-REx-ID: 11438 |
Laser frequency-offset locking at 10-Hz-level instability using hybrid electronic filters
V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
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V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
2022 | Conference Paper | IST-REx-ID: 11476 |
CoCoA: Concurrent continuous group key agreement
J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
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J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
2022 | Journal Article | IST-REx-ID: 11556 |
Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics
A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
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A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
2022 | Journal Article | IST-REx-ID: 11723 |
RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences 119 (2022).
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L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences 119 (2022).
2022 | Thesis | IST-REx-ID: 11945 |
Chimeric G protein-coupled receptors mimic distinct signaling pathways and modulate microglia function
R. Schulz, Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling Pathways and Modulate Microglia Function, Institute of Science and Technology Austria, 2022.
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R. Schulz, Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling Pathways and Modulate Microglia Function, Institute of Science and Technology Austria, 2022.
2022 | Conference Paper | IST-REx-ID: 11775 |
Abstract monitors for quantitative specifications
T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 22nd International Conference on Runtime Verification, Springer Nature, 2022, pp. 200–220.
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T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 22nd International Conference on Runtime Verification, Springer Nature, 2022, pp. 200–220.
2022 | Thesis | IST-REx-ID: 12390 |
Translation-invariant quantum systems with effectively broken symmetry
M. Brooks, Translation-Invariant Quantum Systems with Effectively Broken Symmetry, Institute of Science and Technology Austria, 2022.
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M. Brooks, Translation-Invariant Quantum Systems with Effectively Broken Symmetry, Institute of Science and Technology Austria, 2022.
2022 | Thesis | IST-REx-ID: 11362 |
Learning verifiable representations
M. Lechner, Learning Verifiable Representations, Institute of Science and Technology Austria, 2022.
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M. Lechner, Learning Verifiable Representations, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 9311 |
Finite-memory strategies in POMDPs with long-run average objectives
K. Chatterjee, R.J. Saona Urmeneta, B. Ziliotto, Mathematics of Operations Research 47 (2022) 100–119.
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K. Chatterjee, R.J. Saona Urmeneta, B. Ziliotto, Mathematics of Operations Research 47 (2022) 100–119.
2022 | Journal Article | IST-REx-ID: 11732 |
The BCS energy gap at high density
S.J. Henheik, A.B. Lauritsen, Journal of Statistical Physics 189 (2022).
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S.J. Henheik, A.B. Lauritsen, Journal of Statistical Physics 189 (2022).
2022 | Journal Article | IST-REx-ID: 10842
Factorization of some polynomials over finite local commutative rings and applications to certain self-dual and LCD codes
S. Köse, F. Özbudak, Cryptography and Communications 14 (2022) 933–948.
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S. Köse, F. Özbudak, Cryptography and Communications 14 (2022) 933–948.
2022 | Thesis | IST-REx-ID: 11473 |
Polarons in Bose gases and polar crystals: Some rigorous energy estimates
K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy Estimates, Institute of Science and Technology Austria, 2022.
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K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy Estimates, Institute of Science and Technology Austria, 2022.
2022 | Preprint | IST-REx-ID: 12750 |
Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models
P. Brighi, M. Ljubotina, M. Serbyn, ArXiv (n.d.).
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P. Brighi, M. Ljubotina, M. Serbyn, ArXiv (n.d.).
2022 | Journal Article | IST-REx-ID: 14355 |
A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease
Cali E, Lin S-J, Rocca C, Sahin Y, Al Shamsi A, El Chehadeh S, Chaabouni M, Mankad K, Galanaki E, Efthymiou S, Sudhakar S, Athanasiou-Fragkouli A, Celik T, Narli N, Bianca S, Murphy D, Moreira FMDC, Accogli A, Petree C, Huang K, Monastiri K, Edizadeh M, Nardello R, Ognibene M, De Marco P, Ruggieri M, Zara F, Striano P, Sahin Y, Al-Gazali L, Warde MTA, Gerard B, Zifarelli G, Beetz C, Fortuna S, Soler M, Valente EM, Varshney G, Maroofian R, Salpietro V, Houlden H, Grp SynS. 2022. A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease. Genetics in Medicine. 24(10), 2194–2203.
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Cali E, Lin S-J, Rocca C, Sahin Y, Al Shamsi A, El Chehadeh S, Chaabouni M, Mankad K, Galanaki E, Efthymiou S, Sudhakar S, Athanasiou-Fragkouli A, Celik T, Narli N, Bianca S, Murphy D, Moreira FMDC, Accogli A, Petree C, Huang K, Monastiri K, Edizadeh M, Nardello R, Ognibene M, De Marco P, Ruggieri M, Zara F, Striano P, Sahin Y, Al-Gazali L, Warde MTA, Gerard B, Zifarelli G, Beetz C, Fortuna S, Soler M, Valente EM, Varshney G, Maroofian R, Salpietro V, Houlden H, Grp SynS. 2022. A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease. Genetics in Medicine. 24(10), 2194–2203.
2022 | Journal Article | IST-REx-ID: 11462
Combining of synthetic VHH and immune scFv libraries for pregnancy-associated glycoproteins ELISA development
D. Dormeshkin, M. Shapira, A. Karputs, A. Kavaleuski, I. Kuzminski, E. Stepanova, A. Gilep, Applied Microbiology and Biotechnology 106 (2022) 5093–5103.
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D. Dormeshkin, M. Shapira, A. Karputs, A. Kavaleuski, I. Kuzminski, E. Stepanova, A. Gilep, Applied Microbiology and Biotechnology 106 (2022) 5093–5103.
2022 | Thesis | IST-REx-ID: 10799 |
Robustness and fairness in machine learning
N.H. Konstantinov, Robustness and Fairness in Machine Learning, Institute of Science and Technology Austria, 2022.
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N.H. Konstantinov, Robustness and Fairness in Machine Learning, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 10850 |
Two-particle bound states at interfaces and corners
B. Roos, R. Seiringer, Journal of Functional Analysis 282 (2022).
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B. Roos, R. Seiringer, Journal of Functional Analysis 282 (2022).
2022 | Journal Article | IST-REx-ID: 12117 |
Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay
V. Hübschmann, M. Korkut, S. Siegert, STAR Protocols 3 (2022).
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V. Hübschmann, M. Korkut, S. Siegert, STAR Protocols 3 (2022).
2022 | Journal Article | IST-REx-ID: 12291 |
ABP1–TMK auxin perception for global phosphorylation and auxin canalization
Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
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Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
2022 | Thesis | IST-REx-ID: 11626 |
Auxin and strigolactone non-canonical signaling regulating development in Arabidopsis thaliana
M.C. Gallei, Auxin and Strigolactone Non-Canonical Signaling Regulating Development in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2022.
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M.C. Gallei, Auxin and Strigolactone Non-Canonical Signaling Regulating Development in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 11403
Measuring airborne nanoplastics using aerosol physics
A. Stöllner, Nature Reviews Earth and Environment 3 (2022) 360.
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A. Stöllner, Nature Reviews Earth and Environment 3 (2022) 360.
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