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376 Publications


2021 | Journal Article | IST-REx-ID: 9952 | OA
Chaigne, A., Smith, M. B., Cavestany, R. L., Hannezo, E. B., Chalut, K. J., & Paluch, E. K. (2021). Three-dimensional geometry controls division symmetry in stem cell colonies. Journal of Cell Science. The Company of Biologists. https://doi.org/10.1242/jcs.255018
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2021 | Journal Article | IST-REx-ID: 9547 | OA
Rittig, T., Sumin, D., Babaei, V., Didyk, P., Voloboy, A., Wilkie, A., … Křivánek, J. (2021). Neural acceleration of scattering-aware color 3D printing. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.142626
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2021 | Journal Article | IST-REx-ID: 10178 | OA
Sahu, P., Schwarz, J. M., & Manning, M. L. (2021). Geometric signatures of tissue surface tension in a three-dimensional model of confluent tissue. New Journal of Physics. IOP Publishing. https://doi.org/10.1088/1367-2630/ac23f1
[Published Version] View | Files available | DOI | WoS | arXiv
 

2021 | Journal Article | IST-REx-ID: 10323 | OA
Sučec, I., Bersch, B., & Schanda, P. (2021). How do chaperones bind (partly) unfolded client proteins? Frontiers in Molecular Biosciences. Frontiers. https://doi.org/10.3389/fmolb.2021.762005
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2021 | Journal Article | IST-REx-ID: 10404 | OA
Sietzen, S., Lechner, M., Borowski, J., Hasani, R., & Waldner, M. (2021). Interactive analysis of CNN robustness. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.14418
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2021 | Journal Article | IST-REx-ID: 10628 | OA
Ghazaryan, A., Nica, E. M., Erten, O., & Ghaemi, P. (2021). Shadow surface states in topological Kondo insulators. New Journal of Physics. IOP Publishing. https://doi.org/10.1088/1367-2630/ac4124
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2021 | Conference Paper | IST-REx-ID: 14181 | OA
Dresdner, G., Shekhar, S., Pedregosa, F., Locatello, F., & Rätsch, G. (2021). Boosting variational inference with locally adaptive step-sizes. In Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence (pp. 2337–2343). Montreal, Canada: International Joint Conferences on Artificial Intelligence. https://doi.org/10.24963/ijcai.2021/322
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2021 | Conference Paper | IST-REx-ID: 14180 | OA
Rahaman, N., Gondal, M. W., Joshi, S., Gehler, P., Bengio, Y., Locatello, F., & Schölkopf, B. (2021). Dynamic inference with neural interpreters. In Advances in Neural Information Processing Systems (Vol. 34, pp. 10985–10998). Virtual.
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2021 | Journal Article | IST-REx-ID: 14117 | OA
Scholkopf, B., Locatello, F., Bauer, S., Ke, N. R., Kalchbrenner, N., Goyal, A., & Bengio, Y. (2021). Toward causal representation learning. Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/jproc.2021.3058954
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2021 | Journal Article | IST-REx-ID: 8429 | OA
Patxot, M., Trejo Banos, D., Kousathanas, A., Orliac, E. J., Ojavee, S. E., Moser, G., … Robinson, M. R. (2021). Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-021-27258-9
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2021 | Research Data Reference | IST-REx-ID: 13063 | OA
Robinson, M. R. (2021). Probabilistic inference of the genetic architecture of functional enrichment of complex traits. Dryad. https://doi.org/10.5061/dryad.sqv9s4n51
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2021 | Journal Article | IST-REx-ID: 7553 | OA
Mlynarski, W. F., Hledik, M., Sokolowski, T. R., & Tkačik, G. (2021). Statistical analysis and optimality of neural systems. Neuron. Cell Press. https://doi.org/10.1016/j.neuron.2021.01.020
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2020 | Journal Article | IST-REx-ID: 7708 | OA
Nabais MF, Lin T, Benyamin B, Williams KL, Garton FC, Vinkhuyzen AAE, Zhang F, Vallerga CL, Restuadi R, Freydenzon A, Zwamborn RAJ, Hop PJ, Robinson MR, Gratten J, Visscher PM, Hannon E, Mill J, Brown MA, Laing NG, Mather KA, Sachdev PS, Ngo ST, Steyn FJ, Wallace L, Henders AK, Needham M, Veldink JH, Mathers S, Nicholson G, Rowe DB, Henderson RD, McCombe PA, Pamphlett R, Yang J, Blair IP, McRae AF, Wray NR. 2020. Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis. npj Genomic Medicine. 5, 10.
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2020 | Journal Article | IST-REx-ID: 7814 | OA
Beattie, R. J., Hippenmeyer, S., & Pauler, F. (2020). SCOPES: Sparking curiosity through Open-Source platforms in education and science. Frontiers in Education. Frontiers Media. https://doi.org/10.3389/feduc.2020.00048
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2020 | Journal Article | IST-REx-ID: 9249 | OA
Biswas, R., Largeteau-Skapin, G., Zrour, R., & Andres, E. (2020). Digital objects in rhombic dodecahedron grid. Mathematical Morphology - Theory and Applications. De Gruyter. https://doi.org/10.1515/mathm-2020-0106
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2020 | Conference Paper | IST-REx-ID: 9631 | OA
Aksenov, V., Alistarh, D.-A., & Korhonen, J. (2020). Scalable belief propagation via relaxed scheduling. In Advances in Neural Information Processing Systems (Vol. 33, pp. 22361–22372). Vancouver, Canada: Curran Associates.
[Published Version] View | Download Published Version (ext.) | arXiv
 

2020 | Journal Article | IST-REx-ID: 9208
Laccone, F., Malomo, L., Perez Rodriguez, J., Pietroni, N., Ponchio, F., Bickel, B., & Cignoni, P. (2020). A bending-active twisted-arch plywood structure: Computational design and fabrication of the FlexMaps Pavilion. SN Applied Sciences. Springer Nature. https://doi.org/10.1007/s42452-020-03305-w
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2020 | Conference Paper | IST-REx-ID: 9415 | OA
Kurtz, M., Kopinsky, J., Gelashvili, R., Matveev, A., Carr, J., Goin, M., … Alistarh, D.-A. (2020). Inducing and exploiting activation sparsity for fast neural network inference. In 37th International Conference on Machine Learning, ICML 2020 (Vol. 119, pp. 5533–5543). Online.
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2020 | Conference Paper | IST-REx-ID: 8188 | OA
Henderson, P. M., & Lampert, C. (2020). Unsupervised object-centric video generation and decomposition in 3D. In 34th Conference on Neural Information Processing Systems (Vol. 33, pp. 3106–3117). Vancouver, Canada: Curran Associates.
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2020 | Research Data Reference | IST-REx-ID: 13065 | OA
Arnoux, S., Fraisse, C., & Sauvage, C. (2020). VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species. Dryad. https://doi.org/10.5061/DRYAD.Q2BVQ83HD
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2020 | Journal Article | IST-REx-ID: 6952 | OA
Henderson, P. M., & Ferrari, V. (2020). Learning single-image 3D reconstruction by generative modelling of shape, pose and shading. International Journal of Computer Vision. Springer Nature. https://doi.org/10.1007/s11263-019-01219-8
[Published Version] View | Files available | DOI | WoS | arXiv
 

2020 | Journal Article | IST-REx-ID: 7218
Dodier, P., Winter, F., Auzinger, T., Mistelbauer, G., Frischer, J. M., Wang, W. T., … Bavinzski, G. (2020). Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. International Journal of Oral and Maxillofacial Surgery. Elsevier. https://doi.org/10.1016/j.ijom.2019.11.011
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2020 | Journal Article | IST-REx-ID: 8127 | OA
Gonçalves, P. J., Lueckmann, J.-M., Deistler, M., Nonnenmacher, M., Öcal, K., Bassetto, G., … Macke, J. H. (2020). Training deep neural density estimators to identify mechanistic models of neural dynamics. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.56261
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2020 | Journal Article | IST-REx-ID: 8568 | OA
Prehal, C., Fitzek, H., Kothleitner, G., Presser, V., Gollas, B., Freunberger, S. A., & Abbas, Q. (2020). Persistent and reversible solid iodine electrodeposition in nanoporous carbons. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-020-18610-6
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2020 | Journal Article | IST-REx-ID: 8674 | OA
Henneberger C, Bard L, Panatier A, Reynolds JP, Kopach O, Medvedev NI, Minge D, Herde MK, Anders S, Kraev I, Heller JP, Rama S, Zheng K, Jensen TP, Sanchez-Romero I, Jackson CJ, Janovjak HL, Ottersen OP, Nagelhus EA, Oliet SHR, Stewart MG, Nägerl UVa, Rusakov DA. 2020. LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia. Neuron. 108(5), P919–936.E11.
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2020 | Journal Article | IST-REx-ID: 8707
Galan, S., Machnik, N. N., Kruse, K., Díaz, N., Marti-Renom, M. A., & Vaquerizas, J. M. (2020). CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature Genetics. Springer Nature. https://doi.org/10.1038/s41588-020-00712-y
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2020 | Preprint | IST-REx-ID: 14096 | OA
Jamie A. P. Law-Smith, J. A. P. L.-S., Everson, R. W., Enrico Ramirez-Ruiz, E. R.-R., Mink, S. E. de, Son, L. A. C. van, Götberg, Y. L. L., … Tenley Hutchinson-Smith, T. H.-S. (n.d.). Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics. arXiv. https://doi.org/10.48550/arXiv.2011.06630
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2020 | Journal Article | IST-REx-ID: 8130 | OA
Bossmann, L. (2020). Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-020-01548-w
[Published Version] View | Files available | DOI | WoS | arXiv
 

2020 | Preprint | IST-REx-ID: 7675 | OA
Grah, R., Zoller, B., & Tkačik, G. (2020). Normative models of enhancer function. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.04.08.029405
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2020 | Thesis | IST-REx-ID: 8386 | OA
Zhang, R. (2020). Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8386
[Published Version] View | Files available | DOI
 

2020 | Conference Paper | IST-REx-ID: 8186 | OA
Henderson, P. M., Tsiminaki, V., & Lampert, C. (2020). Leveraging 2D data to learn textured 3D mesh generation. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 7498–7507). Virtual: IEEE. https://doi.org/10.1109/CVPR42600.2020.00752
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 

2020 | Research Data | IST-REx-ID: 14592 | OA
Schur, F. K. (2020). STL-files for 3D-printed grid holders described in  Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14592
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2020 | Journal Article | IST-REx-ID: 7160
Salazar, J. E., Severin, D., Vega Zuniga, T. A., Fernández-Aburto, P., Deichler, A., Sallaberry A., M., & Mpodozis, J. (2020). Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. Karger Publishers. https://doi.org/10.1159/000504162
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2020 | Journal Article | IST-REx-ID: 15064 | OA
Bauer, U., Edelsbrunner, H., Jablonski, G., & Mrozek, M. (2020). Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00058-8
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2020 | Journal Article | IST-REx-ID: 8586 | OA
Fäßler, F., Zens, B., Hauschild, R., & Schur, F. K. (2020). 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Journal of Structural Biology. Elsevier. https://doi.org/10.1016/j.jsb.2020.107633
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2019 | Journal Article | IST-REx-ID: 10354 | OA
Harker-Kirschneck, L., Baum, B., & Šarić, A. (2019). Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico. BMC Biology. Springer Nature. https://doi.org/10.1186/s12915-019-0700-2
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2019 | Journal Article | IST-REx-ID: 11059
Buchwalter, A., Kaneshiro, J. M., & Hetzer, M. (2019). Coaching from the sidelines: The nuclear periphery in genome regulation. Nature Reviews Genetics. Springer Nature. https://doi.org/10.1038/s41576-018-0063-5
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2019 | Book Chapter | IST-REx-ID: 5793
Asaoka, Y., Morita, H., Furumoto, H., Heisenberg, C.-P. J., & Furutani-Seiki, M. (2019). Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In A. Hergovich (Ed.), The hippo pathway (Vol. 1893, pp. 167–181). Springer. https://doi.org/10.1007/978-1-4939-8910-2_14
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2019 | Conference Paper | IST-REx-ID: 6163
Biswas, R., Largeteau-Skapin, G., Zrour, R., & Andres, E. (2019). Rhombic dodecahedron grid—coordinate system and 3D digital object definitions. In 21st IAPR International Conference on Discrete Geometry for Computer Imagery (Vol. 11414, pp. 27–37). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-030-14085-4_3
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2019 | Journal Article | IST-REx-ID: 13471 | OA
Renzo, M., Zapartas, E., de Mink, S. E., Götberg, Y. L. L., Justham, S., Farmer, R. J., … Sana, H. (2019). Massive runaway and walkaway stars. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201833297
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2019 | Journal Article | IST-REx-ID: 6088
Traxl, A., Mairinger, S., Filip, T., Sauberer, M., Stanek, J., Poschner, S., … Langer, O. (2019). Inhibition of ABCB1 and ABCG2 at the mouse blood-brain barrier with marketed drugs to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. Molecular Pharmaceutics. American Chemical Society. https://doi.org/10.1021/acs.molpharmaceut.8b01217
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2019 | Journal Article | IST-REx-ID: 6343
Schur, F. K. (2019). Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging. Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2019.03.018
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2019 | Journal Article | IST-REx-ID: 6470 | OA
Éltes, T., Szoboszlay, M., Szigeti, M. K., & Nusser, Z. (2019). Improved spike inference accuracy by estimating the peak amplitude of unitary [Ca2+] transients in weakly GCaMP6f-expressing hippocampal pyramidal cells. Journal of Physiology. Wiley. https://doi.org/10.1113/JP277681
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2019 | Journal Article | IST-REx-ID: 6513 | OA
Guiu, J., Hannezo, E. B., Yui, S., Demharter, S., Ulyanchenko, S., Maimets, M., … Jensen, K. B. (2019). Tracing the origin of adult intestinal stem cells. Nature. Springer Nature. https://doi.org/10.1038/s41586-019-1212-5
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2019 | Journal Article | IST-REx-ID: 6660 | OA
Sumin, D., Weyrich, T., Rittig, T., Babaei, V., Nindel, T., Wilkie, A., … Myszkowski, K. (2019). Geometry-aware scattering compensation for 3D printing. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/3306346.3322992
[Submitted Version] View | Files available | DOI | WoS
 

2019 | Journal Article | IST-REx-ID: 6896
Oliveira, B., Yahya, A. Ç., & Novarino, G. (2019). Modeling cell-cell interactions in the brain using cerebral organoids. Brain Research. Elsevier. https://doi.org/10.1016/j.brainres.2019.146458
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2019 | Journal Article | IST-REx-ID: 6936 | OA
Ovaskainen, O., Rybicki, J., & Abrego, N. (2019). What can observational data reveal about metacommunity processes? Ecography. Wiley. https://doi.org/10.1111/ecog.04444
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2019 | Journal Article | IST-REx-ID: 7009
Yamada, K., & Sixt, M. K. (2019). Mechanisms of 3D cell migration. Nature Reviews Molecular Cell Biology. Springer Nature. https://doi.org/10.1038/s41580-019-0172-9
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2019 | Journal Article | IST-REx-ID: 7156 | OA
Rueda Sanchez, A. R., Hease, W. J., Barzanjeh, S., & Fink, J. M. (2019). Electro-optic entanglement source for microwave to telecom quantum state transfer. Npj Quantum Information. Springer Nature. https://doi.org/10.1038/s41534-019-0220-5
[Published Version] View | Files available | DOI | WoS | arXiv
 

2019 | Journal Article | IST-REx-ID: 7422 | OA
Sokolowski, T. R., Paijmans, J., Bossen, L., Miedema, T., Wehrens, M., Becker, N. B., … ten Wolde, P. R. (2019). eGFRD in all dimensions. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/1.5064867
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

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