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9114 Publications


2023 | Thesis | IST-REx-ID: 14641
Adaptive mutation in E. coli modulated by luxS
M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Preprint | IST-REx-ID: 14591 | OA
Role of dynamin-related proteins 2 and SH3P2 in clathrin-mediated endocytosis in plants
N. Gnyliukh, A.J. Johnson, M.-K. Nagel, A. Monzer, A. Hlavata, E. Isono, M. Loose, J. Friml, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2023 | Journal Article | IST-REx-ID: 12984 | OA
Skin-Screen: A computational fabrication framework for color tattoos
M. Piovarci, A. Chapiro, B. Bickel, ACM Transactions on Graphics 42 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14778 | OA
On lexicographic proof rules for probabilistic termination
K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, D. Zikelic, Formal Aspects of Computing 35 (2023).
[Published Version] View | Files available | DOI | arXiv
 

2023 | Thesis | IST-REx-ID: 12885 | OA
Nanoparticle-based semiconductor solids: From synthesis to consolidation
M. Calcabrini, Nanoparticle-Based Semiconductor Solids: From Synthesis to Consolidation, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12166 | OA
Professor Kerstin Johannesson–winner of the 2022 Molecular Ecology Prize
A.M. Westram, R. Butlin, Molecular Ecology 32 (2023) 26–29.
[Published Version] View | DOI | Download Published Version (ext.) | WoS
 

2023 | Thesis | IST-REx-ID: 12964 | OA
Mechanochemical pattern formation across biological scales
D.R. Boocock, Mechanochemical Pattern Formation across Biological Scales, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12491 | OA
Ultrastructural characterization of natively preserved extracellular matrix by cryo-electron tomography
B. Zens, Ultrastructural Characterization of Natively Preserved Extracellular Matrix by Cryo-Electron Tomography, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12891 | OA
Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic tissues
A. Schauer, Mesendoderm Formation in Zebrafish Gastrulation: The Role of Extraembryonic Tissues, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12809 | OA
Plasticity in the cerebellum: What molecular mechanisms are behind physiological learning
C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are behind Physiological Learning, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12781 | OA
Structural and mechanistic study of bacterial complex I and its cyanobacterial ortholog
V. Kravchuk, Structural and Mechanistic Study of Bacterial Complex I and Its Cyanobacterial Ortholog, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 13201 | OA
The nitrate transporter NRT2.1 directly antagonizes PIN7-mediated auxin transport for root growth adaptation
Y. Wang, Z. Yuan, J. Wang, H. Xiao, L. Wan, L. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Thesis | IST-REx-ID: 14226 | OA
Generalizing medial axes with homology switches
E.R. Stephenson, Generalizing Medial Axes with Homology Switches, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12531 | OA
Panoramic functional gradients across the mouse retina
K. Kirillova, Panoramic Functional Gradients across the Mouse Retina, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12800 | OA
The effect of local population structure on genetic variation at selected loci in the A. majus hybrid zone
M. Julseth, The Effect of Local Population Structure on Genetic Variation at Selected Loci in the A. Majus Hybrid Zone, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 14510
Mechanism of clathrin-coated vesicle formation during endocytosis in plants
N. Gnyliukh, Mechanism of Clathrin-Coated Vesicle  Formation during Endocytosis in Plants, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12897 | OA
Inverse shape design with parametric representations: Kirchhoff Rods and parametric surface models
C. Hafner, Inverse Shape Design with Parametric Representations: Kirchhoff Rods and Parametric Surface Models, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 13188 | OA
The design space of Kirchhoff rods
C. Hafner, B. Bickel, ACM Transactions on Graphics 42 (2023).
[Submitted Version] View | Files available | DOI | WoS
 

2023 | Thesis | IST-REx-ID: 12470 | OA
A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy
J.M. Michalska, A Versatile Toolbox for the Comprehensive Analysis of Nervous Tissue Organization with Light Microscopy, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 10652 | OA [Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 10758 | OA
1H NMR chemical exchange techniques reveal local and global effects of oxidized cytosine derivatives
R.C.A. Dubini, E. Korytiaková, T. Schinkel, P. Heinrichs, T. Carell, P. Rovo, ACS Physical Chemistry Au 2 (2022) 237–246.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Conference Paper | IST-REx-ID: 10774 | OA
Flavors of sequential information flow
E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A.O. Da Costa, in:, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer Nature, 2022, pp. 1–19.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 10769 | OA
Non relativistic quantum field theory: Dynamics and irreversibility
L. Daguerre, G. Torroba, R.A. Medina Ramos, M. Solís, Anales de la Asociacion Fisica Argentina 32 (2022) 93–98.
[Published Version] View | Files available | DOI
 

2022 | Preprint | IST-REx-ID: 10821 | OA
Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades
F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. de Arcangelis, O. Shriki, BioRxiv (2022).
[Preprint] View | DOI | Download Preprint (ext.)
 

2022 | Journal Article | IST-REx-ID: 10845 | OA
Impurity with a resonance in the vicinity of the Fermi energy
M. Maslov, M. Lemeshko, A. Volosniev, Physical Review Research 4 (2022).
[Published Version] View | Files available | DOI | arXiv
 

2022 | Journal Article | IST-REx-ID: 10939 | OA
Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
A. Davidović, R.P. Chait, G. Batt, J. Ruess, PLoS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 11051
Nuclear pore complex maintenance and implications for age-related diseases
J. Liu, M. Hetzer, Trends in Cell Biology 32 (2022) P216-227.
View | DOI | PubMed | Europe PMC
 

2022 | Conference Paper | IST-REx-ID: 11184 | OA
Fast graphical population protocols
D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
[Published Version] View | Files available | DOI | arXiv
 

2022 | Conference Paper | IST-REx-ID: 11183 | OA
Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters
A. Nikabadi, J. Korhonen, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 11182 | OA
Quantifying the probing and selection of microenvironmental pores by motile immune cells
J. Kroll, M.J.A. Ruiz-Fernandez, M.B. Braun, J. Merrin, J. Renkawitz, Current Protocols 2 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Conference Paper | IST-REx-ID: 11428 | OA
A cautionary tale: Burning the medial axis is unstable
E. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, X. Goaoc, M. Kerber (Eds.), 38th International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, p. 66:1-66:9.
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 11420 | OA
Mean-field analysis of piecewise linear solutions for wide ReLU networks
A. Shevchenko, V. Kungurtsev, M. Mondelli, Journal of Machine Learning Research 23 (2022) 1–55.
[Published Version] View | Files available | arXiv
 

2022 | Book (Editor) | IST-REx-ID: 11429
Web and Wireless Geographical Information Systems
F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information Systems, 1st ed., Springer Nature, Cham, 2022.
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2022 | Book Chapter | IST-REx-ID: 11440 | OA
The persistent homology of dual digital image constructions
B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11444 | OA
From the prefect’s desk: Gerard van Swieten’s library correspondence
C.A. Chlebak, P.H. Reid, Library and Information History 38 (2022) 23–41.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 

2022 | Book Chapter | IST-REx-ID: 11456
Proteomic Analysis of C. Elegans Neurons Using TurboID-Based Proximity Labeling
M. Artan, M. de Bono, in:, D. Yamamoto (Ed.), Behavioral Neurogenetics, Springer Nature, New York, 2022, pp. 277–294.
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2022 | Journal Article | IST-REx-ID: 11488 | OA
The MUSE eXtremely Deep Field: Individual detections of Lyα haloes around rest-frame UV-selected galaxies at z ≃ 2.9–4.4
H. Kusakabe, A. Verhamme, J. Blaizot, T. Garel, L. Wisotzki, F. Leclercq, R. Bacon, J. Schaye, S.G. Gallego, J. Kerutt, J.J. Matthee, M. Maseda, T. Nanayakkara, R. Pelló, J. Richard, L. Tresse, T. Urrutia, E. Vitte, Astronomy & Astrophysics 660 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11497 | OA
Equivalent widths of Lyman α emitters in MUSE-Wide and MUSE-Deep
J. Kerutt, L. Wisotzki, A. Verhamme, K.B. Schmidt, F. Leclercq, E.C. Herenz, T. Urrutia, T. Garel, T. Hashimoto, M. Maseda, J.J. Matthee, H. Kusakabe, J. Schaye, J. Richard, B. Guiderdoni, V. Mauerhofer, T. Nanayakkara, E. Vitte, Astronomy & Astrophysics 659 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11490 | OA
Deciphering stellar metallicities in the early universe: Case study of a young galaxy at z = 4.77 in the MUSE eXtremely Deep Field
J.J. Matthee, A. Feltre, M. Maseda, T. Nanayakkara, L. Boogaard, R. Bacon, A. Verhamme, F. Leclercq, H. Kusakabe, T. Urrutia, L. Wisotzki, Astronomy & Astrophysics 660 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11509 | OA
EMPRESS. IV. Extremely metal-poor galaxies including very low-mass primordial systems with M∗= 10⁴-10⁵⊙ and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability supernovae
Isobe Y, Ouchi M, Suzuki A, Moriya TJ, Nakajima K, Nomoto K, Rauch M, Harikane Y, Kojima T, Ono Y, Fujimoto S, Inoue AK, Kim JH, Komiyama Y, Kusakabe H, Lee C-H, Maseda M, Matthee JJ, Michel-Dansac L, Nagao T, Nanayakkara T, Nishigaki M, Onodera M, Sugahara Y, Xu Y. 2022. EMPRESS. IV. Extremely metal-poor galaxies including very low-mass primordial systems with M∗= 104-105⊙ and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability supernovae. The Astrophysical Journal. 925(2), 111.
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11510 | OA
The LEGA-C of nature and nurture in stellar populations at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent galaxies in different environments
D. Sobral, A. van der Wel, R. Bezanson, E. Bell, A. Muzzin, F. D’Eugenio, B. Darvish, A. Gallazzi, P.-F. Wu, M. Maseda, J.J. Matthee, A. Paulino-Afonso, C. Straatman, P.G. van Dokkum, The Astrophysical Journal 926 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11511 | OA
On the variation in stellar α-enhancements of star-forming galaxies in the EAGLE simulation
A. Gebek, J.J. Matthee, The Astrophysical Journal 924 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11521 | OA
(Re)Solving reionization with Lyα: How bright Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background
J.J. Matthee, R.P. Naidu, G. Pezzulli, M. Gronke, D. Sobral, P.A. Oesch, M. Hayes, D. Erb, D. Schaerer, R. Amorín, S. Tacchella, A.P.-A. Ana Paulino-Afonso, M. Llerena, J. Calhau, H. Röttgering, Monthly Notices of the Royal Astronomical Society 512 (2022) 5960–5977.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11553 | OA
The dynamics of complex box mappings
T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal 8 (2022) 319–410.
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2022 | Journal Article | IST-REx-ID: 11601 | OA
The K2 Galactic Archaeology Program data release 3: Age-abundance patterns in C1–C8 and C10–C18
Zinn JC, Stello D, Elsworth Y, García RA, Kallinger T, Mathur S, Mosser B, Hon M, Bugnet LA, Jones C, Reyes C, Sharma S, Schönrich R, Warfield JT, Luger R, Vanderburg A, Kobayashi C, Pinsonneault MH, Johnson JA, Huber D, Buder S, Joyce M, Bland-Hawthorn J, Casagrande L, Lewis GF, Miglio A, Nordlander T, Davies GR, Silva GD, Chaplin WJ, Silva Aguirre V. 2022. The K2 Galactic Archaeology Program data release 3: Age-abundance patterns in C1–C8 and C10–C18. The Astrophysical Journal. 926(2), 191.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11602 | OA
Detections of solar-like oscillations in dwarfs and subgiants with Kepler DR25 short-cadence data
S. Mathur, R.A. García, S. Breton, A.R.G. Santos, B. Mosser, D. Huber, M. Sayeed, L.A. Bugnet, A. Chontos, Astronomy & Astrophysics 657 (2022).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11600
Hidden currents at the Sun’s surface
L.A. Bugnet, Nature Astronomy 6 (2022) 631–632.
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2022 | Journal Article | IST-REx-ID: 11621 | OA [Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11638 | OA
Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
[Published Version] View | Files available | DOI | arXiv
 

2022 | Journal Article | IST-REx-ID: 11662
Constant-time Dynamic (Δ +1)-Coloring
M.H. Henzinger, P. Peng, ACM Transactions on Algorithms 18 (2022).
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