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376 Publications
2021 | Journal Article | IST-REx-ID: 9952 |
Three-dimensional geometry controls division symmetry in stem cell colonies
A. Chaigne, M.B. Smith, R.L. Cavestany, E.B. Hannezo, K.J. Chalut, E.K. Paluch, Journal of Cell Science 134 (2021).
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A. Chaigne, M.B. Smith, R.L. Cavestany, E.B. Hannezo, K.J. Chalut, E.K. Paluch, Journal of Cell Science 134 (2021).
2021 | Journal Article | IST-REx-ID: 9547 |
Neural acceleration of scattering-aware color 3D printing
T. Rittig, D. Sumin, V. Babaei, P. Didyk, A. Voloboy, A. Wilkie, B. Bickel, K. Myszkowski, T. Weyrich, J. Křivánek, Computer Graphics Forum 40 (2021) 205–219.
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T. Rittig, D. Sumin, V. Babaei, P. Didyk, A. Voloboy, A. Wilkie, B. Bickel, K. Myszkowski, T. Weyrich, J. Křivánek, Computer Graphics Forum 40 (2021) 205–219.
2021 | Journal Article | IST-REx-ID: 10178 |
Geometric signatures of tissue surface tension in a three-dimensional model of confluent tissue
P. Sahu, J.M. Schwarz, M.L. Manning, New Journal of Physics 23 (2021).
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P. Sahu, J.M. Schwarz, M.L. Manning, New Journal of Physics 23 (2021).
2021 | Journal Article | IST-REx-ID: 10323 |
How do chaperones bind (partly) unfolded client proteins?
I. Sučec, B. Bersch, P. Schanda, Frontiers in Molecular Biosciences 8 (2021).
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I. Sučec, B. Bersch, P. Schanda, Frontiers in Molecular Biosciences 8 (2021).
2021 | Journal Article | IST-REx-ID: 10404 |
Interactive analysis of CNN robustness
S. Sietzen, M. Lechner, J. Borowski, R. Hasani, M. Waldner, Computer Graphics Forum 40 (2021) 253–264.
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S. Sietzen, M. Lechner, J. Borowski, R. Hasani, M. Waldner, Computer Graphics Forum 40 (2021) 253–264.
2021 | Journal Article | IST-REx-ID: 10628 |
Shadow surface states in topological Kondo insulators
A. Ghazaryan, E.M. Nica, O. Erten, P. Ghaemi, New Journal of Physics 23 (2021).
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A. Ghazaryan, E.M. Nica, O. Erten, P. Ghaemi, New Journal of Physics 23 (2021).
2021 | Conference Paper | IST-REx-ID: 14181 |
Boosting variational inference with locally adaptive step-sizes
G. Dresdner, S. Shekhar, F. Pedregosa, F. Locatello, G. Rätsch, in:, Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, International Joint Conferences on Artificial Intelligence, 2021, pp. 2337–2343.
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G. Dresdner, S. Shekhar, F. Pedregosa, F. Locatello, G. Rätsch, in:, Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, International Joint Conferences on Artificial Intelligence, 2021, pp. 2337–2343.
2021 | Conference Paper | IST-REx-ID: 14180 |
Dynamic inference with neural interpreters
N. Rahaman, M.W. Gondal, S. Joshi, P. Gehler, Y. Bengio, F. Locatello, B. Schölkopf, in:, Advances in Neural Information Processing Systems, 2021, pp. 10985–10998.
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N. Rahaman, M.W. Gondal, S. Joshi, P. Gehler, Y. Bengio, F. Locatello, B. Schölkopf, in:, Advances in Neural Information Processing Systems, 2021, pp. 10985–10998.
2021 | Journal Article | IST-REx-ID: 14117 |
Toward causal representation learning
B. Scholkopf, F. Locatello, S. Bauer, N.R. Ke, N. Kalchbrenner, A. Goyal, Y. Bengio, Proceedings of the IEEE 109 (2021) 612–634.
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B. Scholkopf, F. Locatello, S. Bauer, N.R. Ke, N. Kalchbrenner, A. Goyal, Y. Bengio, Proceedings of the IEEE 109 (2021) 612–634.
2021 | Journal Article | IST-REx-ID: 8429 |
Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits
M. Patxot, D. Trejo Banos, A. Kousathanas, E.J. Orliac, S.E. Ojavee, G. Moser, J. Sidorenko, Z. Kutalik, R. Magi, P.M. Visscher, L. Ronnegard, M.R. Robinson, Nature Communications 12 (2021).
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M. Patxot, D. Trejo Banos, A. Kousathanas, E.J. Orliac, S.E. Ojavee, G. Moser, J. Sidorenko, Z. Kutalik, R. Magi, P.M. Visscher, L. Ronnegard, M.R. Robinson, Nature Communications 12 (2021).
2021 | Research Data Reference | IST-REx-ID: 13063 |
Probabilistic inference of the genetic architecture of functional enrichment of complex traits
M.R. Robinson, (2021).
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M.R. Robinson, (2021).
2021 | Journal Article | IST-REx-ID: 7553 |
Statistical analysis and optimality of neural systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, Neuron 109 (2021) 1227–1241.e5.
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W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, Neuron 109 (2021) 1227–1241.e5.
2020 | Journal Article | IST-REx-ID: 7708 |
Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis
Nabais MF, Lin T, Benyamin B, Williams KL, Garton FC, Vinkhuyzen AAE, Zhang F, Vallerga CL, Restuadi R, Freydenzon A, Zwamborn RAJ, Hop PJ, Robinson MR, Gratten J, Visscher PM, Hannon E, Mill J, Brown MA, Laing NG, Mather KA, Sachdev PS, Ngo ST, Steyn FJ, Wallace L, Henders AK, Needham M, Veldink JH, Mathers S, Nicholson G, Rowe DB, Henderson RD, McCombe PA, Pamphlett R, Yang J, Blair IP, McRae AF, Wray NR. 2020. Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis. npj Genomic Medicine. 5, 10.
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Nabais MF, Lin T, Benyamin B, Williams KL, Garton FC, Vinkhuyzen AAE, Zhang F, Vallerga CL, Restuadi R, Freydenzon A, Zwamborn RAJ, Hop PJ, Robinson MR, Gratten J, Visscher PM, Hannon E, Mill J, Brown MA, Laing NG, Mather KA, Sachdev PS, Ngo ST, Steyn FJ, Wallace L, Henders AK, Needham M, Veldink JH, Mathers S, Nicholson G, Rowe DB, Henderson RD, McCombe PA, Pamphlett R, Yang J, Blair IP, McRae AF, Wray NR. 2020. Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis. npj Genomic Medicine. 5, 10.
2020 | Journal Article | IST-REx-ID: 7814 |
SCOPES: Sparking curiosity through Open-Source platforms in education and science
R.J. Beattie, S. Hippenmeyer, F. Pauler, Frontiers in Education 5 (2020).
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R.J. Beattie, S. Hippenmeyer, F. Pauler, Frontiers in Education 5 (2020).
2020 | Journal Article | IST-REx-ID: 9249 |
Digital objects in rhombic dodecahedron grid
R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, Mathematical Morphology - Theory and Applications 4 (2020) 143–158.
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R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, Mathematical Morphology - Theory and Applications 4 (2020) 143–158.
2020 | Conference Paper | IST-REx-ID: 9631 |
Scalable belief propagation via relaxed scheduling
V. Aksenov, D.-A. Alistarh, J. Korhonen, in:, Advances in Neural Information Processing Systems, Curran Associates, 2020, pp. 22361–22372.
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V. Aksenov, D.-A. Alistarh, J. Korhonen, in:, Advances in Neural Information Processing Systems, Curran Associates, 2020, pp. 22361–22372.
2020 | Journal Article | IST-REx-ID: 9208
A bending-active twisted-arch plywood structure: Computational design and fabrication of the FlexMaps Pavilion
F. Laccone, L. Malomo, J. Perez Rodriguez, N. Pietroni, F. Ponchio, B. Bickel, P. Cignoni, SN Applied Sciences 2 (2020).
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F. Laccone, L. Malomo, J. Perez Rodriguez, N. Pietroni, F. Ponchio, B. Bickel, P. Cignoni, SN Applied Sciences 2 (2020).
2020 | Conference Paper | IST-REx-ID: 9415 |
Inducing and exploiting activation sparsity for fast neural network inference
M. Kurtz, J. Kopinsky, R. Gelashvili, A. Matveev, J. Carr, M. Goin, W. Leiserson, S. Moore, B. Nell, N. Shavit, D.-A. Alistarh, in:, 37th International Conference on Machine Learning, ICML 2020, 2020, pp. 5533–5543.
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M. Kurtz, J. Kopinsky, R. Gelashvili, A. Matveev, J. Carr, M. Goin, W. Leiserson, S. Moore, B. Nell, N. Shavit, D.-A. Alistarh, in:, 37th International Conference on Machine Learning, ICML 2020, 2020, pp. 5533–5543.
2020 | Conference Paper | IST-REx-ID: 8188 |
Unsupervised object-centric video generation and decomposition in 3D
P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Curran Associates, 2020, pp. 3106–3117.
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P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Curran Associates, 2020, pp. 3106–3117.
2020 | Research Data Reference | IST-REx-ID: 13065 |
VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species
S. Arnoux, C. Fraisse, C. Sauvage, (2020).
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S. Arnoux, C. Fraisse, C. Sauvage, (2020).
2020 | Journal Article | IST-REx-ID: 6952 |
Learning single-image 3D reconstruction by generative modelling of shape, pose and shading
P.M. Henderson, V. Ferrari, International Journal of Computer Vision 128 (2020) 835–854.
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P.M. Henderson, V. Ferrari, International Journal of Computer Vision 128 (2020) 835–854.
2020 | Journal Article | IST-REx-ID: 7218
Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method
P. Dodier, F. Winter, T. Auzinger, G. Mistelbauer, J.M. Frischer, W.T. Wang, A. Mallouhi, W. Marik, S. Wolfsberger, L. Reissig, F. Hammadi, C. Matula, A. Baumann, G. Bavinzski, International Journal of Oral and Maxillofacial Surgery 49 (2020) P1007-1015.
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P. Dodier, F. Winter, T. Auzinger, G. Mistelbauer, J.M. Frischer, W.T. Wang, A. Mallouhi, W. Marik, S. Wolfsberger, L. Reissig, F. Hammadi, C. Matula, A. Baumann, G. Bavinzski, International Journal of Oral and Maxillofacial Surgery 49 (2020) P1007-1015.
2020 | Journal Article | IST-REx-ID: 8127 |
Training deep neural density estimators to identify mechanistic models of neural dynamics
P.J. Gonçalves, J.-M. Lueckmann, M. Deistler, M. Nonnenmacher, K. Öcal, G. Bassetto, C. Chintaluri, W.F. Podlaski, S.A. Haddad, T.P. Vogels, D.S. Greenberg, J.H. Macke, ELife 9 (2020).
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P.J. Gonçalves, J.-M. Lueckmann, M. Deistler, M. Nonnenmacher, K. Öcal, G. Bassetto, C. Chintaluri, W.F. Podlaski, S.A. Haddad, T.P. Vogels, D.S. Greenberg, J.H. Macke, ELife 9 (2020).
2020 | Journal Article | IST-REx-ID: 8568 |
Persistent and reversible solid iodine electrodeposition in nanoporous carbons
C. Prehal, H. Fitzek, G. Kothleitner, V. Presser, B. Gollas, S.A. Freunberger, Q. Abbas, Nature Communications 11 (2020).
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C. Prehal, H. Fitzek, G. Kothleitner, V. Presser, B. Gollas, S.A. Freunberger, Q. Abbas, Nature Communications 11 (2020).
2020 | Journal Article | IST-REx-ID: 8674 |
LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia
Henneberger C, Bard L, Panatier A, Reynolds JP, Kopach O, Medvedev NI, Minge D, Herde MK, Anders S, Kraev I, Heller JP, Rama S, Zheng K, Jensen TP, Sanchez-Romero I, Jackson CJ, Janovjak HL, Ottersen OP, Nagelhus EA, Oliet SHR, Stewart MG, Nägerl UVa, Rusakov DA. 2020. LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia. Neuron. 108(5), P919–936.E11.
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Henneberger C, Bard L, Panatier A, Reynolds JP, Kopach O, Medvedev NI, Minge D, Herde MK, Anders S, Kraev I, Heller JP, Rama S, Zheng K, Jensen TP, Sanchez-Romero I, Jackson CJ, Janovjak HL, Ottersen OP, Nagelhus EA, Oliet SHR, Stewart MG, Nägerl UVa, Rusakov DA. 2020. LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia. Neuron. 108(5), P919–936.E11.
2020 | Journal Article | IST-REx-ID: 8707
CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
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S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
2020 | Preprint | IST-REx-ID: 14096 |
Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics
J.A.P.L.-S. Jamie A. P. Law-Smith, R.W. Everson, E.R.-R. Enrico Ramirez-Ruiz, S.E. de Mink, L.A.C. van Son, Y.L.L. Götberg, S. Zellmann, A.V.-G. Alejandro Vigna-Gómez, M. Renzo, S. Wu, S.L. Schrøder, R.J. Foley, T.H.-S. Tenley Hutchinson-Smith, ArXiv (n.d.).
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J.A.P.L.-S. Jamie A. P. Law-Smith, R.W. Everson, E.R.-R. Enrico Ramirez-Ruiz, S.E. de Mink, L.A.C. van Son, Y.L.L. Götberg, S. Zellmann, A.V.-G. Alejandro Vigna-Gómez, M. Renzo, S. Wu, S.L. Schrøder, R.J. Foley, T.H.-S. Tenley Hutchinson-Smith, ArXiv (n.d.).
2020 | Journal Article | IST-REx-ID: 8130 |
Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons
L. Bossmann, Archive for Rational Mechanics and Analysis 238 (2020) 541–606.
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L. Bossmann, Archive for Rational Mechanics and Analysis 238 (2020) 541–606.
2020 | Preprint | IST-REx-ID: 7675 |
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
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R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
2020 | Thesis | IST-REx-ID: 8386 |
Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability
R. Zhang, Structure-Aware Computational Design and Its Application to 3D Printable Volume Scattering, Mechanism, and Multistability, Institute of Science and Technology Austria, 2020.
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R. Zhang, Structure-Aware Computational Design and Its Application to 3D Printable Volume Scattering, Mechanism, and Multistability, Institute of Science and Technology Austria, 2020.
2020 | Conference Paper | IST-REx-ID: 8186 |
Leveraging 2D data to learn textured 3D mesh generation
P.M. Henderson, V. Tsiminaki, C. Lampert, in:, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2020, pp. 7498–7507.
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P.M. Henderson, V. Tsiminaki, C. Lampert, in:, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2020, pp. 7498–7507.
2020 | Journal Article | IST-REx-ID: 7160
Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes)
J.E. Salazar, D. Severin, T.A. Vega Zuniga, P. Fernández-Aburto, A. Deichler, M. Sallaberry A., J. Mpodozis, Brain, Behavior and Evolution 94 (2020) 27–36.
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J.E. Salazar, D. Severin, T.A. Vega Zuniga, P. Fernández-Aburto, A. Deichler, M. Sallaberry A., J. Mpodozis, Brain, Behavior and Evolution 94 (2020) 27–36.
2020 | Journal Article | IST-REx-ID: 15064 |
Čech-Delaunay gradient flow and homology inference for self-maps
U. Bauer, H. Edelsbrunner, G. Jablonski, M. Mrozek, Journal of Applied and Computational Topology 4 (2020) 455–480.
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U. Bauer, H. Edelsbrunner, G. Jablonski, M. Mrozek, Journal of Applied and Computational Topology 4 (2020) 455–480.
2020 | Journal Article | IST-REx-ID: 8586 |
3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy
F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
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F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
2019 | Journal Article | IST-REx-ID: 10354 |
Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico
L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
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L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
2019 | Journal Article | IST-REx-ID: 11059
Coaching from the sidelines: The nuclear periphery in genome regulation
A. Buchwalter, J.M. Kaneshiro, M. Hetzer, Nature Reviews Genetics 20 (2019) 39–50.
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A. Buchwalter, J.M. Kaneshiro, M. Hetzer, Nature Reviews Genetics 20 (2019) 39–50.
2019 | Book Chapter | IST-REx-ID: 5793
Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids
Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.
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Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.
2019 | Conference Paper | IST-REx-ID: 6163
Rhombic dodecahedron grid—coordinate system and 3D digital object definitions
R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, in:, 21st IAPR International Conference on Discrete Geometry for Computer Imagery, Springer Berlin Heidelberg, Berlin, Heidelberg, 2019, pp. 27–37.
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R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, in:, 21st IAPR International Conference on Discrete Geometry for Computer Imagery, Springer Berlin Heidelberg, Berlin, Heidelberg, 2019, pp. 27–37.
2019 | Journal Article | IST-REx-ID: 13471 |
Massive runaway and walkaway stars
M. Renzo, E. Zapartas, S.E. de Mink, Y.L.L. Götberg, S. Justham, R.J. Farmer, R.G. Izzard, S. Toonen, H. Sana, Astronomy & Astrophysics 624 (2019).
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| arXiv
M. Renzo, E. Zapartas, S.E. de Mink, Y.L.L. Götberg, S. Justham, R.J. Farmer, R.G. Izzard, S. Toonen, H. Sana, Astronomy & Astrophysics 624 (2019).
2019 | Journal Article | IST-REx-ID: 6088
Inhibition of ABCB1 and ABCG2 at the mouse blood-brain barrier with marketed drugs to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib
A. Traxl, S. Mairinger, T. Filip, M. Sauberer, J. Stanek, S. Poschner, W. Jäger, V. Zoufal, G. Novarino, N. Tournier, M. Bauer, T. Wanek, O. Langer, Molecular Pharmaceutics 16 (2019) 1282–1293.
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A. Traxl, S. Mairinger, T. Filip, M. Sauberer, J. Stanek, S. Poschner, W. Jäger, V. Zoufal, G. Novarino, N. Tournier, M. Bauer, T. Wanek, O. Langer, Molecular Pharmaceutics 16 (2019) 1282–1293.
2019 | Journal Article | IST-REx-ID: 6343
Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging
F.K. Schur, Current Opinion in Structural Biology 58 (2019) 1–9.
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F.K. Schur, Current Opinion in Structural Biology 58 (2019) 1–9.
2019 | Journal Article | IST-REx-ID: 6470 |
Improved spike inference accuracy by estimating the peak amplitude of unitary [Ca2+] transients in weakly GCaMP6f-expressing hippocampal pyramidal cells
T. Éltes, M. Szoboszlay, M.K. Szigeti, Z. Nusser, Journal of Physiology 597 (2019) 2925–2947.
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T. Éltes, M. Szoboszlay, M.K. Szigeti, Z. Nusser, Journal of Physiology 597 (2019) 2925–2947.
2019 | Journal Article | IST-REx-ID: 6513 |
Tracing the origin of adult intestinal stem cells
J. Guiu, E.B. Hannezo, S. Yui, S. Demharter, S. Ulyanchenko, M. Maimets, A. Jørgensen, S. Perlman, L. Lundvall, L.S. Mamsen, A. Larsen, R.H. Olesen, C.Y. Andersen, L.L. Thuesen, K.J. Hare, T.H. Pers, K. Khodosevich, B.D. Simons, K.B. Jensen, Nature 570 (2019) 107–111.
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J. Guiu, E.B. Hannezo, S. Yui, S. Demharter, S. Ulyanchenko, M. Maimets, A. Jørgensen, S. Perlman, L. Lundvall, L.S. Mamsen, A. Larsen, R.H. Olesen, C.Y. Andersen, L.L. Thuesen, K.J. Hare, T.H. Pers, K. Khodosevich, B.D. Simons, K.B. Jensen, Nature 570 (2019) 107–111.
2019 | Journal Article | IST-REx-ID: 6660 |
Geometry-aware scattering compensation for 3D printing
D. Sumin, T. Weyrich, T. Rittig, V. Babaei, T. Nindel, A. Wilkie, P. Didyk, B. Bickel, J. Křivánek, K. Myszkowski, ACM Transactions on Graphics 38 (2019).
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D. Sumin, T. Weyrich, T. Rittig, V. Babaei, T. Nindel, A. Wilkie, P. Didyk, B. Bickel, J. Křivánek, K. Myszkowski, ACM Transactions on Graphics 38 (2019).
2019 | Journal Article | IST-REx-ID: 6896
Modeling cell-cell interactions in the brain using cerebral organoids
B. Oliveira, A.Ç. Yahya, G. Novarino, Brain Research 1724 (2019).
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B. Oliveira, A.Ç. Yahya, G. Novarino, Brain Research 1724 (2019).
2019 | Journal Article | IST-REx-ID: 6936 |
What can observational data reveal about metacommunity processes?
O. Ovaskainen, J. Rybicki, N. Abrego, Ecography 42 (2019) 1877–1886.
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O. Ovaskainen, J. Rybicki, N. Abrego, Ecography 42 (2019) 1877–1886.
2019 | Journal Article | IST-REx-ID: 7009
Mechanisms of 3D cell migration
K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
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K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
2019 | Journal Article | IST-REx-ID: 7156 |
Electro-optic entanglement source for microwave to telecom quantum state transfer
A.R. Rueda Sanchez, W.J. Hease, S. Barzanjeh, J.M. Fink, Npj Quantum Information 5 (2019).
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A.R. Rueda Sanchez, W.J. Hease, S. Barzanjeh, J.M. Fink, Npj Quantum Information 5 (2019).
2019 | Journal Article | IST-REx-ID: 7422 |
eGFRD in all dimensions
T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics 150 (2019).
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T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics 150 (2019).
2019 | Conference Paper | IST-REx-ID: 7468 |
Map inference via block-coordinate Frank-Wolfe algorithm
P. Swoboda, V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2019.
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P. Swoboda, V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2019.
2019 | Conference Paper | IST-REx-ID: 9261
FlexMaps Pavilion: A twisted arc made of mesostructured flat flexible panels
F. Laccone, L. Malomo, J. Perez Rodriguez, N. Pietroni, F. Ponchio, B. Bickel, P. Cignoni, in:, IASS Symposium 2019 - 60th Anniversary Symposium of the International Association for Shell and Spatial Structures; Structural Membranes 2019 - 9th International Conference on Textile Composites and Inflatable Structures, FORM and FORCE, International Center for Numerical Methods in Engineering, 2019, pp. 509–515.
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F. Laccone, L. Malomo, J. Perez Rodriguez, N. Pietroni, F. Ponchio, B. Bickel, P. Cignoni, in:, IASS Symposium 2019 - 60th Anniversary Symposium of the International Association for Shell and Spatial Structures; Structural Membranes 2019 - 9th International Conference on Textile Composites and Inflatable Structures, FORM and FORCE, International Center for Numerical Methods in Engineering, 2019, pp. 509–515.
2019 | Book Chapter | IST-REx-ID: 8281
Mathematical models in population genetics
N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.
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N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.
2019 | Conference Paper | IST-REx-ID: 14190 |
On the transfer of inductive bias from simulation to the real world: a new disentanglement dataset
M.W. Gondal, M. Wüthrich, Đ. Miladinović, F. Locatello, M. Breidt, V. Volchkov, J. Akpo, O. Bachem, B. Schölkopf, S. Bauer, in:, Advances in Neural Information Processing Systems, 2019.
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M.W. Gondal, M. Wüthrich, Đ. Miladinović, F. Locatello, M. Breidt, V. Volchkov, J. Akpo, O. Bachem, B. Schölkopf, S. Bauer, in:, Advances in Neural Information Processing Systems, 2019.
2019 | Journal Article | IST-REx-ID: 14299 |
Custom-size, functional, and durable DNA origami with design-specific scaffolds
E. FAS, F.M. Praetorius, C. Wachauf, G. Brüggenthies, F. Kohler, B. Kick, K. Kadletz, P. Pham, K. Behler, T. Gerling, H. Dietz, ACS Nano 13 (2019) 5015–5027.
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E. FAS, F.M. Praetorius, C. Wachauf, G. Brüggenthies, F. Kohler, B. Kick, K. Kadletz, P. Pham, K. Behler, T. Gerling, H. Dietz, ACS Nano 13 (2019) 5015–5027.
2019 | Thesis | IST-REx-ID: 6947 |
Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking
F.P. Assen, Lymph Node Mechanics: Deciphering the Interplay between Stroma Contractility, Morphology and Lymphocyte Trafficking, Institute of Science and Technology Austria, 2019.
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F.P. Assen, Lymph Node Mechanics: Deciphering the Interplay between Stroma Contractility, Morphology and Lymphocyte Trafficking, Institute of Science and Technology Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6486 |
Relaminarization of pipe flow by means of 3D-printed shaped honeycombs
J. Kühnen, D. Scarselli, B. Hof, Journal of Fluids Engineering 141 (2019).
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J. Kühnen, D. Scarselli, B. Hof, Journal of Fluids Engineering 141 (2019).
2019 | Journal Article | IST-REx-ID: 7117 |
X-CAD: Optimizing CAD Models with Extended Finite Elements
C. Hafner, C. Schumacher, E. Knoop, T. Auzinger, B. Bickel, M. Bächer, ACM Transactions on Graphics 38 (2019).
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C. Hafner, C. Schumacher, E. Knoop, T. Auzinger, B. Bickel, M. Bächer, ACM Transactions on Graphics 38 (2019).
2018 | Journal Article | IST-REx-ID: 1092 |
Generalized permutohedra from probabilistic graphical models
F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
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F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
2018 | Journal Article | IST-REx-ID: 11508 |
Confirmation of double peaked Lyα emission at z = 6.593: Witnessing a galaxy directly contributing to the reionisation of the universe
J.J. Matthee, D. Sobral, M. Gronke, A. Paulino-Afonso, M. Stefanon, H. Röttgering, Astronomy & Astrophysics 619 (2018).
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J.J. Matthee, D. Sobral, M. Gronke, A. Paulino-Afonso, M. Stefanon, H. Röttgering, Astronomy & Astrophysics 619 (2018).
2018 | Journal Article | IST-REx-ID: 11584 |
Star-forming galaxies are predicted to lie on a fundamental plane of mass, star formation rate, and α-enhancement
J.J. Matthee, J. Schaye, Monthly Notices of the Royal Astronomical Society: Letters 479 (2018) L34–L39.
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J.J. Matthee, J. Schaye, Monthly Notices of the Royal Astronomical Society: Letters 479 (2018) L34–L39.
2018 | Journal Article | IST-REx-ID: 2015 |
Learning directed acyclic graphs based on sparsest permutations
G. Raskutti, C. Uhler, STAT 7 (2018).
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G. Raskutti, C. Uhler, STAT 7 (2018).
2018 | Journal Article | IST-REx-ID: 306 |
An introduction to the maximum entropy approach and its application to inference problems in biology
A. De Martino, D. De Martino, Heliyon 4 (2018).
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A. De Martino, D. De Martino, Heliyon 4 (2018).
2018 | Conference Paper | IST-REx-ID: 6164
Sphere construction on the FCC grid interpreted as layered hexagonal grids in 3D
G. Koshti, R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, P. Bhowmick, in:, 19th International Workshop, Springer, Cham, 2018, pp. 82–96.
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G. Koshti, R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, P. Bhowmick, in:, 19th International Workshop, Springer, Cham, 2018, pp. 82–96.
2018 | Journal Article | IST-REx-ID: 703 |
Maximum persistency via iterative relaxed inference with graphical models
A. Shekhovtsov, P. Swoboda, B. Savchynskyy, IEEE Transactions on Pattern Analysis and Machine Intelligence 40 (2018) 1668–1682.
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A. Shekhovtsov, P. Swoboda, B. Savchynskyy, IEEE Transactions on Pattern Analysis and Machine Intelligence 40 (2018) 1668–1682.
2018 | Journal Article | IST-REx-ID: 7722
Signatures of negative selection in the genetic architecture of human complex traits
J. Zeng, R. de Vlaming, Y. Wu, M.R. Robinson, L.R. Lloyd-Jones, L. Yengo, C.X. Yap, A. Xue, J. Sidorenko, A.F. McRae, J.E. Powell, G.W. Montgomery, A. Metspalu, T. Esko, G. Gibson, N.R. Wray, P.M. Visscher, J. Yang, Nature Genetics 50 (2018) 746–753.
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J. Zeng, R. de Vlaming, Y. Wu, M.R. Robinson, L.R. Lloyd-Jones, L. Yengo, C.X. Yap, A. Xue, J. Sidorenko, A.F. McRae, J.E. Powell, G.W. Montgomery, A. Metspalu, T. Esko, G. Gibson, N.R. Wray, P.M. Visscher, J. Yang, Nature Genetics 50 (2018) 746–753.
2018 | Conference Paper | IST-REx-ID: 7812 |
Model compression via distillation and quantization
A. Polino, R. Pascanu, D.-A. Alistarh, in:, 6th International Conference on Learning Representations, 2018.
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A. Polino, R. Pascanu, D.-A. Alistarh, in:, 6th International Conference on Learning Representations, 2018.
2018 | Journal Article | IST-REx-ID: 12607 |
Aspect controls the survival of ice cliffs on debris-covered glaciers
P. Buri, F. Pellicciotti, PNAS 115 (2018) 4369–4374.
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P. Buri, F. Pellicciotti, PNAS 115 (2018) 4369–4374.
2018 | Thesis | IST-REx-ID: 201 |
Multiple covers with balls
M. Iglesias Ham, Multiple Covers with Balls, Institute of Science and Technology Austria, 2018.
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M. Iglesias Ham, Multiple Covers with Balls, Institute of Science and Technology Austria, 2018.
2018 | Journal Article | IST-REx-ID: 410 |
A micro-CT-based method for quantitative brain lesion characterization and electrode localization
J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Scientific Reports 8 (2018).
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J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Scientific Reports 8 (2018).
2018 | Journal Article | IST-REx-ID: 399 |
Calculation of the critical temperature of a dilute Bose gas in the Bogoliubov approximation
M.M. Napiórkowski, R. Reuvers, J. Solovej, EPL 121 (2018).
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M.M. Napiórkowski, R. Reuvers, J. Solovej, EPL 121 (2018).
2018 | Conference Paper | IST-REx-ID: 273 |
Efficient optimization for rank-based loss functions
P. Mohapatra, M. Rolinek, C.V. Jawahar, V. Kolmogorov, M.P. Kumar, in:, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2018, pp. 3693–3701.
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P. Mohapatra, M. Rolinek, C.V. Jawahar, V. Kolmogorov, M.P. Kumar, in:, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2018, pp. 3693–3701.
2018 | Journal Article | IST-REx-ID: 563 |
Estimating barriers to gene flow from distorted isolation-by-distance patterns
H. Ringbauer, A. Kolesnikov, D. Field, N.H. Barton, Genetics 208 (2018) 1231–1245.
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H. Ringbauer, A. Kolesnikov, D. Field, N.H. Barton, Genetics 208 (2018) 1231–1245.
2018 | Conference Paper | IST-REx-ID: 14202 |
Boosting black box variational inference
F. Locatello, G. Dresdner, R. Khanna, I. Valera, G. Rätsch, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2018.
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F. Locatello, G. Dresdner, R. Khanna, I. Valera, G. Rätsch, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2018.
2018 | Conference Paper | IST-REx-ID: 14201 |
Boosting variational inference: An optimization perspective
F. Locatello, R. Khanna, J. Ghosh, G. Rätsch, in:, Proceedings of the 21st International Conference on Artificial Intelligence and Statistics, ML Research Press, 2018, pp. 464–472.
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F. Locatello, R. Khanna, J. Ghosh, G. Rätsch, in:, Proceedings of the 21st International Conference on Artificial Intelligence and Statistics, ML Research Press, 2018, pp. 464–472.
2018 | Journal Article | IST-REx-ID: 13 |
Metamolds: Computational design of silicone molds
T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM Trans. Graph. 37 (2018).
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T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM Trans. Graph. 37 (2018).
2018 | Book Chapter | IST-REx-ID: 153
Micro-engineered “pillar forests” to study cell migration in complex but controlled 3D environments
J. Renkawitz, A. Reversat, A.F. Leithner, J. Merrin, M.K. Sixt, in:, Methods in Cell Biology, Academic Press, 2018, pp. 79–91.
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J. Renkawitz, A. Reversat, A.F. Leithner, J. Merrin, M.K. Sixt, in:, Methods in Cell Biology, Academic Press, 2018, pp. 79–91.
2018 | Journal Article | IST-REx-ID: 276 |
Nano-scale microfluidics to study 3D chemotaxis at the single cell level
C. Frick, P. Dettinger, J. Renkawitz, A. Jauch, C. Berger, M. Recher, T. Schroeder, M. Mehling, PLoS One 13 (2018).
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C. Frick, P. Dettinger, J. Renkawitz, A. Jauch, C. Berger, M. Recher, T. Schroeder, M. Mehling, PLoS One 13 (2018).
2018 | Journal Article | IST-REx-ID: 20 |
Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, BMC Genomics 19 (2018).
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J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, BMC Genomics 19 (2018).
2018 | Journal Article | IST-REx-ID: 406 |
Probabilistic models of individual and collective animal behavior
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, PLoS One 13 (2018).
[Submitted Version]
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K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, PLoS One 13 (2018).
2018 | Research Data Reference | IST-REx-ID: 9831
Implementation of the inference method in Matlab
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, (2018).
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K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, (2018).
2018 | Journal Article | IST-REx-ID: 14 |
Relative contribution of PIN-containing secretory vesicles and plasma membrane PINs to the directed auxin transport: Theoretical estimation
S. Hille, M. Akhmanova, M. Glanc, A.J. Johnson, J. Friml, International Journal of Molecular Sciences 19 (2018).
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S. Hille, M. Akhmanova, M. Glanc, A.J. Johnson, J. Friml, International Journal of Molecular Sciences 19 (2018).
2018 | Journal Article | IST-REx-ID: 326 |
Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices
K. Sawada, R. Kawakami, R. Shigemoto, T. Nemoto, European Journal of Neuroscience 47 (2018) 1033–1042.
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K. Sawada, R. Kawakami, R. Shigemoto, T. Nemoto, European Journal of Neuroscience 47 (2018) 1033–1042.
2018 | Journal Article | IST-REx-ID: 5976 |
FlexMaps: Computational design of flat flexible shells for shaping 3D objects
L. Malomo, J. Perez Rodriguez, E. Iarussi, N. Pietroni, E. Miguel, P. Cignoni, B. Bickel, ACM Transactions on Graphics 37 (2018).
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L. Malomo, J. Perez Rodriguez, E. Iarussi, N. Pietroni, E. Miguel, P. Cignoni, B. Bickel, ACM Transactions on Graphics 37 (2018).
2018 | Conference Paper | IST-REx-ID: 5978 |
Exact MAP-inference by confining combinatorial search with LP relaxation
S. Haller, P. Swoboda, B. Savchynskyy, in:, Proceedings of the 32st AAAI Conference on Artificial Intelligence, AAAI Press, 2018, pp. 6581–6588.
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S. Haller, P. Swoboda, B. Savchynskyy, in:, Proceedings of the 32st AAAI Conference on Artificial Intelligence, AAAI Press, 2018, pp. 6581–6588.
2018 | Journal Article | IST-REx-ID: 6003 |
State of the art on stylized fabrication
B. Bickel, P. Cignoni, L. Malomo, N. Pietroni, Computer Graphics Forum 37 (2018) 325–342.
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B. Bickel, P. Cignoni, L. Malomo, N. Pietroni, Computer Graphics Forum 37 (2018) 325–342.
2018 | Thesis | IST-REx-ID: 200 |
Inferring recent demography from spatial genetic structure
H. Ringbauer, Inferring Recent Demography from Spatial Genetic Structure, Institute of Science and Technology Austria, 2018.
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H. Ringbauer, Inferring Recent Demography from Spatial Genetic Structure, Institute of Science and Technology Austria, 2018.
2018 | Journal Article | IST-REx-ID: 163 |
Agitation modules: Flexible means to accelerate automated freeze substitution
S. Reipert, H. Goldammer, C. Richardson, M. Goldberg, T. Hawkins, E. Saeckl, W. Kaufmann, S. Antreich, Y. Stierhof, Journal of Histochemistry and Cytochemistry 66 (2018) 903–921.
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S. Reipert, H. Goldammer, C. Richardson, M. Goldberg, T. Hawkins, E. Saeckl, W. Kaufmann, S. Antreich, Y. Stierhof, Journal of Histochemistry and Cytochemistry 66 (2018) 903–921.
2018 | Journal Article | IST-REx-ID: 6
A micro-CT-based method for characterising lesions and locating electrodes in small animal brains
J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Journal of Visualized Experiments 141 (2018).
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J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Journal of Visualized Experiments 141 (2018).
2018 | Journal Article | IST-REx-ID: 139 |
The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies
C. Fraisse, C. Roux, P. Gagnaire, J. Romiguier, N. Faivre, J. Welch, N. Bierne, PeerJ 2018 (2018).
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C. Fraisse, C. Roux, P. Gagnaire, J. Romiguier, N. Faivre, J. Welch, N. Bierne, PeerJ 2018 (2018).
2018 | Journal Article | IST-REx-ID: 286
Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering
T. Ellis, D. Field, N.H. Barton, Molecular Ecology Resources 18 (2018) 988–999.
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T. Ellis, D. Field, N.H. Barton, Molecular Ecology Resources 18 (2018) 988–999.
2018 | Research Data | IST-REx-ID: 5583 |
Data and Python scripts supporting Python package FAPS
T. Ellis, (2018).
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T. Ellis, (2018).
2018 | Journal Article | IST-REx-ID: 542 |
Complex history and differentiation patterns of the t-haplotype, a mouse meiotic driver
R.K. Kelemen, B. Vicoso, Genetics 208 (2018) 365–375.
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R.K. Kelemen, B. Vicoso, Genetics 208 (2018) 365–375.
2017 | Journal Article | IST-REx-ID: 11567 |
A 1.4 deg2 blind survey for C II], C III] and C IV at z ∼ 0.7–1.5 – II. Luminosity functions and cosmic average line ratios
A. Stroe, D. Sobral, J.J. Matthee, J. Calhau, I. Oteo, Monthly Notices of the Royal Astronomical Society 471 (2017) 2575–2586.
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A. Stroe, D. Sobral, J.J. Matthee, J. Calhau, I. Oteo, Monthly Notices of the Royal Astronomical Society 471 (2017) 2575–2586.
2017 | Journal Article | IST-REx-ID: 452
Spin it: Optimizing moment of inertia for spinnable objects
M. Bächer, B. Bickel, E. Whiting, O. Sorkine Hornung, Communications of the ACM 60 (2017) 92–99.
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M. Bächer, B. Bickel, E. Whiting, O. Sorkine Hornung, Communications of the ACM 60 (2017) 92–99.
2017 | Journal Article | IST-REx-ID: 484 |
Bogoliubov correction to the mean-field dynamics of interacting bosons
P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.
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P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.
2017 | Journal Article | IST-REx-ID: 5800
On the functionality and usefulness of Quadraginta octants of naive sphere
R. Biswas, P. Bhowmick, Journal of Mathematical Imaging and Vision 59 (2017) 69–83.
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R. Biswas, P. Bhowmick, Journal of Mathematical Imaging and Vision 59 (2017) 69–83.
2017 | Journal Article | IST-REx-ID: 5799
On the polyhedra of graceful spheres and circular geodesics
R. Biswas, P. Bhowmick, V.E. Brimkov, Discrete Applied Mathematics 216 (2017) 362–375.
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| DOI
R. Biswas, P. Bhowmick, V.E. Brimkov, Discrete Applied Mathematics 216 (2017) 362–375.
2017 | Conference Paper | IST-REx-ID: 5801
Fast and Efficient Incremental Algorithms for Circular and Spherical Propagation in Integer Space
S. Dwivedi, A. Gupta, S. Roy, R. Biswas, P. Bhowmick, in:, 20th IAPR International Conference, Springer Nature, Cham, 2017, pp. 347–359.
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S. Dwivedi, A. Gupta, S. Roy, R. Biswas, P. Bhowmick, in:, 20th IAPR International Conference, Springer Nature, Cham, 2017, pp. 347–359.
2017 | Book Chapter | IST-REx-ID: 5803
Construction of persistent Voronoi diagram on 3D digital plane
R. Biswas, P. Bhowmick, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2017, pp. 93–104.
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R. Biswas, P. Bhowmick, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2017, pp. 93–104.