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376 Publications
2017 | Conference Paper | IST-REx-ID: 646 | 
A novel convex relaxation for non binary discrete tomography
J. Kuske, P. Swoboda, S. Petra, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 235–246.
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J. Kuske, P. Swoboda, S. Petra, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 235–246.
2017 | Journal Article | IST-REx-ID: 698 |
Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression
Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
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Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
2017 | Journal Article | IST-REx-ID: 722 |
Shaping 3D root system architecture
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
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| PubMed | Europe PMC
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
2017 | Journal Article | IST-REx-ID: 7729
Detection and quantification of inbreeding depression for complex traits from SNP data
L. Yengo, Z. Zhu, N.R. Wray, B.S. Weir, J. Yang, M.R. Robinson, P.M. Visscher, Proceedings of the National Academy of Sciences 114 (2017) 8602–8607.
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L. Yengo, Z. Zhu, N.R. Wray, B.S. Weir, J. Yang, M.R. Robinson, P.M. Visscher, Proceedings of the National Academy of Sciences 114 (2017) 8602–8607.
2017 | Journal Article | IST-REx-ID: 7731
Inference on the genetic basis of eye and skin color in an admixed population via Bayesian linear mixed models
L.R. Lloyd-Jones, M.R. Robinson, G. Moser, J. Zeng, S. Beleza, G.S. Barsh, H. Tang, P.M. Visscher, Genetics 206 (2017) 1113–1126.
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L.R. Lloyd-Jones, M.R. Robinson, G. Moser, J. Zeng, S. Beleza, G.S. Barsh, H. Tang, P.M. Visscher, Genetics 206 (2017) 1113–1126.
2017 | Journal Article | IST-REx-ID: 7757
Designing allostery-inspired response in mechanical networks
J.W. Rocks, N. Pashine, I. Bischofberger, C.P. Goodrich, A.J. Liu, S.R. Nagel, Proceedings of the National Academy of Sciences 114 (2017) 2520–2525.
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J.W. Rocks, N. Pashine, I. Bischofberger, C.P. Goodrich, A.J. Liu, S.R. Nagel, Proceedings of the National Academy of Sciences 114 (2017) 2520–2525.
2017 | Journal Article | IST-REx-ID: 817 |
Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å
B. Turoňová, F.K. Schur, W. Wan, J. Briggs, Journal of Structural Biology 199 (2017) 187–195.
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B. Turoňová, F.K. Schur, W. Wan, J. Briggs, Journal of Structural Biology 199 (2017) 187–195.
2017 | Journal Article | IST-REx-ID: 8240 |
Long term storage in liquid nitrogen leads to only minor phenotypic and gene expression changes in the mammary carcinoma model cell line BT474
J. Singer, T.W. Grunt, E. Jensen-Jarolim, J. Singer, Oncotarget 8 (2017) 35076–35087.
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J. Singer, T.W. Grunt, E. Jensen-Jarolim, J. Singer, Oncotarget 8 (2017) 35076–35087.
2017 | Journal Article | IST-REx-ID: 8446
Solid‐state NMR H–N–(C)–H and H–N–C–C 3D/4D correlation experiments for resonance assignment of large proteins
H. Fraga, C. Arnaud, D.F. Gauto, M. Audin, V. Kurauskas, P. Macek, C. Krichel, J. Guan, J. Boisbouvier, R. Sprangers, C. Breyton, P. Schanda, ChemPhysChem 18 (2017) 2697–2703.
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H. Fraga, C. Arnaud, D.F. Gauto, M. Audin, V. Kurauskas, P. Macek, C. Krichel, J. Guan, J. Boisbouvier, R. Sprangers, C. Breyton, P. Schanda, ChemPhysChem 18 (2017) 2697–2703.
2017 | Journal Article | IST-REx-ID: 680 |
Sensory noise predicts divisive reshaping of receptive fields
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).
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M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).
2017 | Journal Article | IST-REx-ID: 486 |
Scattering-aware texture reproduction for 3D printing
O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
[Submitted Version]
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O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
2017 | Journal Article | IST-REx-ID: 1074 |
Inferring recent demography from isolation by distance of long shared sequence blocks
H. Ringbauer, G. Coop, N.H. Barton, Genetics 205 (2017) 1335–1351.
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H. Ringbauer, G. Coop, N.H. Barton, Genetics 205 (2017) 1335–1351.
2017 | Conference Paper | IST-REx-ID: 1002 |
Functionality-aware retargeting of mechanisms to 3D shapes
R. Zhang, T. Auzinger, D. Ceylan, W. Li, B. Bickel, in:, ACM, 2017.
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R. Zhang, T. Auzinger, D. Ceylan, W. Li, B. Bickel, in:, ACM, 2017.
2017 | Conference Paper | IST-REx-ID: 1001 |
CurveUps: Shaping objects from flat plates with tension-actuated curvature
R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.
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R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.
2017 | Journal Article | IST-REx-ID: 994 |
Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules
I. Cherepanov, M. Lemeshko, Physical Review Materials 1 (2017).
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I. Cherepanov, M. Lemeshko, Physical Review Materials 1 (2017).
2017 | Research Data | IST-REx-ID: 5561 |
Graph matching problems for annotating C. Elegans
D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017).
[Published Version]
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D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017).
2016 | Journal Article | IST-REx-ID: 1088
Geometric control and modeling of genome reprogramming
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
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C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
2016 | Conference Paper | IST-REx-ID: 1099 |
FlexMolds: Automatic design of flexible shells for molding
L. Malomo, N. Pietroni, B. Bickel, P. Cignoni, in:, ACM, 2016.
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L. Malomo, N. Pietroni, B. Bickel, P. Cignoni, in:, ACM, 2016.
2016 | Conference Paper | IST-REx-ID: 1105
Estimating nonlinear neural response functions using GP priors and Kronecker methods
C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
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C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
2016 | Conference Paper | IST-REx-ID: 1115 |
Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
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A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
2016 | Conference Paper | IST-REx-ID: 1319
DefSense: computational design of customized deformable input devices
M. Bächer, B. Hepp, F. Pece, P. Kry, B. Bickel, B. Thomaszewski, O. Hilliges, in:, ACM, 2016, pp. 3806–3816.
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M. Bächer, B. Hepp, F. Pece, P. Kry, B. Bickel, B. Thomaszewski, O. Hilliges, in:, ACM, 2016, pp. 3806–3816.
2016 | Journal Article | IST-REx-ID: 1518 |
Efficient strategies for calculating blockwise likelihoods under the coalescent
K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.
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K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.
2016 | Journal Article | IST-REx-ID: 1148
Adaptive moment closure for parameter inference of biochemical reaction networks
C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
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C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
2016 | Conference Paper | IST-REx-ID: 5806
On functionality of quadraginta octants of naive sphere with application to circle drawing
R. Biswas, P. Bhowmick, in:, Discrete Geometry for Computer Imagery, Springer Nature, Cham, 2016, pp. 256–267.
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R. Biswas, P. Bhowmick, in:, Discrete Geometry for Computer Imagery, Springer Nature, Cham, 2016, pp. 256–267.
2016 | Book Chapter | IST-REx-ID: 5809
On the connectivity and smoothness of discrete spherical circles
R. Biswas, P. Bhowmick, V.E. Brimkov, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2016, pp. 86–100.
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R. Biswas, P. Bhowmick, V.E. Brimkov, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2016, pp. 86–100.
2016 | Journal Article | IST-REx-ID: 983 |
Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level
A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016).
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A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016).
2016 | Conference Paper | IST-REx-ID: 948
Neurons equipped with intrinsic plasticity learn stimulus intensity statistics
T. Monk, C. Savin, J. Lücke, in:, Neural Information Processing Systems, 2016, pp. 4285–4293.
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T. Monk, C. Savin, J. Lücke, in:, Neural Information Processing Systems, 2016, pp. 4285–4293.
2016 | Journal Article | IST-REx-ID: 1794 |
Inference algorithms for pattern-based CRFs on sequence data
V. Kolmogorov, R. Takhanov, Algorithmica 76 (2016) 17–46.
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V. Kolmogorov, R. Takhanov, Algorithmica 76 (2016) 17–46.
2016 | Journal Article | IST-REx-ID: 1263 |
Efficient microwave to optical photon conversion: An electro-optical realization
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, Optica 3 (2016) 597–604.
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A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, Optica 3 (2016) 597–604.
2016 | Journal Article | IST-REx-ID: 14302
Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth
E. Stahl, F.M. Praetorius, C.C. de Oliveira Mann, K.-P. Hopfner, H. Dietz, ACS Nano 10 (2016) 9156–9164.
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E. Stahl, F.M. Praetorius, C.C. de Oliveira Mann, K.-P. Hopfner, H. Dietz, ACS Nano 10 (2016) 9156–9164.
2016 | Journal Article | IST-REx-ID: 14304
Design of a molecular support for cryo-EM structure determination
T.G. Martin, T.A.M. Bharat, A.C. Joerger, X. Bai, F.M. Praetorius, A.R. Fersht, H. Dietz, S.H.W. Scheres, PNAS 113 (2016) E7456–E7463.
[Published Version]
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T.G. Martin, T.A.M. Bharat, A.C. Joerger, X. Bai, F.M. Praetorius, A.R. Fersht, H. Dietz, S.H.W. Scheres, PNAS 113 (2016) E7456–E7463.
2016 | Research Data | IST-REx-ID: 5553 |
Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012
D. Field, T. Ellis, (2016).
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D. Field, T. Ellis, (2016).
2015 | Journal Article | IST-REx-ID: 10794 |
Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
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F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
2015 | Journal Article | IST-REx-ID: 11668 |
On multiple keyword sponsored search auctions with budgets
R. Colini-Baldeschi, S. Leonardi, M.H. Henzinger, M. Starnberger, ACM Transactions on Economics and Computation 4 (2015).
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R. Colini-Baldeschi, S. Leonardi, M.H. Henzinger, M. Starnberger, ACM Transactions on Economics and Computation 4 (2015).
2015 | Conference Paper | IST-REx-ID: 1483 |
A stable multi-scale kernel for topological machine learning
J. Reininghaus, S. Huber, U. Bauer, R. Kwitt, in:, IEEE, 2015, pp. 4741–4748.
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J. Reininghaus, S. Huber, U. Bauer, R. Kwitt, in:, IEEE, 2015, pp. 4741–4748.
2015 | Journal Article | IST-REx-ID: 1538 |
Iterative experiment design guides the characterization of a light-inducible gene expression circuit
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
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J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
2015 | Book Chapter | IST-REx-ID: 1596 |
Vertical visibility among parallel polygons in three dimensions
R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
[Submitted Version]
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R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
2015 | Conference Paper | IST-REx-ID: 1625
Detailed spatio-temporal reconstruction of eyelids
A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
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A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1628 |
Microstructures to control elasticity in 3D printing
C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
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C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1630 |
Learning shape placements by example
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
[Submitted Version]
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P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
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S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
2015 | Journal Article | IST-REx-ID: 1684 |
Numerous transitions of sex chromosomes in Diptera
B. Vicoso, D. Bachtrog, PLoS Biology 13 (2015).
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B. Vicoso, D. Bachtrog, PLoS Biology 13 (2015).
2015 | Journal Article | IST-REx-ID: 1817 |
YAP is essential for tissue tension to ensure vertebrate 3D body shape
Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
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Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
2015 | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
2015 | Journal Article | IST-REx-ID: 1874
A three-plane architectonic atlas of the rat hippocampal region
C.N. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
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C.N. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
2015 | Journal Article | IST-REx-ID: 1879 |
Developing 3D SEM in a broad biological context
Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
[Published Version]
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Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
2015 | Conference Paper | IST-REx-ID: 1992 |
Succinct representation of concurrent trace sets
A. Gupta, T.A. Henzinger, A. Radhakrishna, R. Samanta, T. Tarrach, in:, ACM, 2015, pp. 433–444.
[Submitted Version]
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A. Gupta, T.A. Henzinger, A. Radhakrishna, R. Samanta, T. Tarrach, in:, ACM, 2015, pp. 433–444.
2015 | Technical Report | IST-REx-ID: 5444 |
Reconstructing robust phylogenies of metastatic cancers
J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
[Published Version]
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J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
2015 | Journal Article | IST-REx-ID: 7456
Solvothermal synthesis and controlled self-assembly of monodisperse titanium-based perovskite colloidal nanocrystals
D. Caruntu, T. Rostamzadeh, T. Costanzo, S. Salemizadeh Parizi, G. Caruntu, Nanoscale 7 (2015) 12955–12969.
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| PubMed | Europe PMC
D. Caruntu, T. Rostamzadeh, T. Costanzo, S. Salemizadeh Parizi, G. Caruntu, Nanoscale 7 (2015) 12955–12969.
2015 | Journal Article | IST-REx-ID: 1793 |
DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots
O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).
[Published Version]
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O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).
2015 | Research Data Reference | IST-REx-ID: 9715
Mathematical inference of the results
B. Trubenova, S. Novak, R. Hager, (2015).
[Published Version]
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B. Trubenova, S. Novak, R. Hager, (2015).
2015 | Journal Article | IST-REx-ID: 1537 |
Cortical contractility triggers a stochastic switch to fast amoeboid cell motility
V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
[Published Version]
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V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
2014 | Book Chapter | IST-REx-ID: 10893
Toward the extraction of saddle periodic orbits
J. Kasten, J. Reininghaus, W. Reich, G. Scheuermann, in:, P.-T. Bremer, I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis and Visualization III , Springer, Cham, 2014, pp. 55–69.
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J. Kasten, J. Reininghaus, W. Reich, G. Scheuermann, in:, P.-T. Bremer, I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis and Visualization III , Springer, Cham, 2014, pp. 55–69.
2014 | Conference Paper | IST-REx-ID: 1393 |
Probabilistic programming
A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
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A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
2014 | Conference Paper | IST-REx-ID: 1872 |
Extensional crisis and proving identity
A. Gupta, L. Kovács, B. Kragl, A. Voronkov, in:, F. Cassez, J.-F. Raskin (Eds.), ATVA 2014, Springer, 2014, pp. 185–200.
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A. Gupta, L. Kovács, B. Kragl, A. Voronkov, in:, F. Cassez, J.-F. Raskin (Eds.), ATVA 2014, Springer, 2014, pp. 185–200.
2014 | Journal Article | IST-REx-ID: 1930
Fast and memory-efficient topological denoising of 2D and 3D scalar fields
D. Günther, A. Jacobson, J. Reininghaus, H. Seidel, O. Sorkine Hornung, T. Weinkauf, IEEE Transactions on Visualization and Computer Graphics 20 (2014) 2585–2594.
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D. Günther, A. Jacobson, J. Reininghaus, H. Seidel, O. Sorkine Hornung, T. Weinkauf, IEEE Transactions on Visualization and Computer Graphics 20 (2014) 2585–2594.
2014 | Journal Article | IST-REx-ID: 2013 |
Hypersurfaces and their singularities in partial correlation testing
S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
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S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
2014 | Conference Paper | IST-REx-ID: 2051 |
Multilabel structured output learning with random spanning trees of max-margin Markov networks
M. Marchand, S. Hongyu, E. Morvant, J. Rousu, J. Shawe Taylor, in:, Neural Information Processing Systems, 2014.
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M. Marchand, S. Hongyu, E. Morvant, J. Rousu, J. Shawe Taylor, in:, Neural Information Processing Systems, 2014.
2014 | Conference Paper | IST-REx-ID: 2058 |
Blending liquids
K. Raveendran, C. Wojtan, N. Thuerey, G. Türk, in:, ACM Transactions on Graphics, ACM, 2014.
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K. Raveendran, C. Wojtan, N. Thuerey, G. Türk, in:, ACM Transactions on Graphics, ACM, 2014.
2014 | Conference Paper | IST-REx-ID: 2081
Designing inflatable structures
M. Skouras, B. Thomaszewski, P. Kaufmann, A. Garg, B. Bickel, E. Grinspun, M. Gross, in:, ACM, 2014.
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M. Skouras, B. Thomaszewski, P. Kaufmann, A. Garg, B. Bickel, E. Grinspun, M. Gross, in:, ACM, 2014.
2014 | Conference Paper | IST-REx-ID: 2080
Spin-It: Optimizing moment of inertia for spinnable objects
M. Bac̈Her, E. Whiting, B. Bickel, O. Sorkine Hornung, in:, ACM, 2014.
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M. Bac̈Her, E. Whiting, B. Bickel, O. Sorkine Hornung, in:, ACM, 2014.
2014 | Conference Paper | IST-REx-ID: 2171 |
Closed-form approximate CRF training for scalable image segmentation
A. Kolesnikov, M. Guillaumin, V. Ferrari, C. Lampert, in:, D. Fleet, T. Pajdla, B. Schiele, T. Tuytelaars (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 550–565.
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A. Kolesnikov, M. Guillaumin, V. Ferrari, C. Lampert, in:, D. Fleet, T. Pajdla, B. Schiele, T. Tuytelaars (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 550–565.
2014 | Journal Article | IST-REx-ID: 2227
Allopolyploid origin of the Balkan endemic Ranunculus wettsteinii (Ranunculaceae) inferred from nuclear and plastid DNA sequences
E. Cires Rodriguez, M. Baltisberger, C. Cuesta, P. Vargas, J. Prieto, Organisms Diversity and Evolution 14 (2014) 1–10.
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E. Cires Rodriguez, M. Baltisberger, C. Cuesta, P. Vargas, J. Prieto, Organisms Diversity and Evolution 14 (2014) 1–10.
2014 | Journal Article | IST-REx-ID: 2261 |
DICE, an efficient system for iterative genomic editing in human pluripotent stem cells
F. Zhu, M. Gamboa, A. Farruggio, S. Hippenmeyer, B. Tasic, B. Schüle, Y. Chen Tsai, M. Calos, Nucleic Acids Research 42 (2014).
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F. Zhu, M. Gamboa, A. Farruggio, S. Hippenmeyer, B. Tasic, B. Schüle, Y. Chen Tsai, M. Calos, Nucleic Acids Research 42 (2014).
2014 | Conference Paper | IST-REx-ID: 5810
On Finding Spherical Geodesic Paths and Circles in ℤ3
R. Biswas, P. Bhowmick, 8668 (2014) 396–409.
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R. Biswas, P. Bhowmick, 8668 (2014) 396–409.
2014 | Journal Article | IST-REx-ID: 927
Theory of epithelial sheet morphology in three dimensions
E.B. Hannezo, J. Prost, J. Joanny, PNAS 111 (2014) 27–32.
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E.B. Hannezo, J. Prost, J. Joanny, PNAS 111 (2014) 27–32.
2014 | Journal Article | IST-REx-ID: 2170 |
Likelihood-based inference of population history from low-coverage de novo genome assemblies
J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular Ecology 23 (2014) 198–211.
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J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular Ecology 23 (2014) 198–211.
2013 | Journal Article | IST-REx-ID: 11520 |
The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS
D. Sobral, A.M. Swinbank, J.P. Stott, J.J. Matthee, R.G. Bower, I. Smail, P. Best, J.E. Geach, R.M. Sharples, The Astrophysical Journal 779 (2013).
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D. Sobral, A.M. Swinbank, J.P. Stott, J.J. Matthee, R.G. Bower, I. Smail, P. Best, J.E. Geach, R.M. Sharples, The Astrophysical Journal 779 (2013).
2013 | Journal Article | IST-REx-ID: 2010 |
Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
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C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
2013 | Journal Article | IST-REx-ID: 2108
Computational design of mechanical characters
S. Coros, B. Thomaszewski, G. Noris, S. Sueda, M. Forberg, R. Sumner, W. Matusik, B. Bickel, ACM Transactions on Graphics 32 (2013).
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S. Coros, B. Thomaszewski, G. Noris, S. Sueda, M. Forberg, R. Sumner, W. Matusik, B. Bickel, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2113
3D printing spatially varying BRDFs
O. Rouiller, B. Bickel, J. Kautz, W. Matusik, M. Alexa, IEEE Computer Graphics and Applications 33 (2013) 48–57.
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O. Rouiller, B. Bickel, J. Kautz, W. Matusik, M. Alexa, IEEE Computer Graphics and Applications 33 (2013) 48–57.
2013 | Journal Article | IST-REx-ID: 2114
Computational aspects of fabrication: Modeling, design and 3d printing
B. Bickel, M. Alexa, IEEE Computer Graphics and Applications 33 (2013) 24–25.
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B. Bickel, M. Alexa, IEEE Computer Graphics and Applications 33 (2013) 24–25.
2013 | Journal Article | IST-REx-ID: 2269
Analytic Visibility on the GPU
T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 32 (2013) 409–418.
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T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 32 (2013) 409–418.
2013 | Book Chapter | IST-REx-ID: 2413
Neuronal oscillations scale up and scale down the brain dynamics
M. Valderrama, V. Botella Soler, M. Le Van Quyen, in:, M. Meyer, Z. Pesenson (Eds.), Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, Wiley-VCH, 2013.
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| DOI
M. Valderrama, V. Botella Soler, M. Le Van Quyen, in:, M. Meyer, Z. Pesenson (Eds.), Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, Wiley-VCH, 2013.
2013 | Conference Paper | IST-REx-ID: 2447 |
Automating separation logic using SMT
R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
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R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
2013 | Journal Article | IST-REx-ID: 2471 |
Mechanism of protein kinetic stabilization by engineered disulfide crosslinks
I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
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I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
2013 | Conference Paper | IST-REx-ID: 2520 |
The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
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N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
2013 | Journal Article | IST-REx-ID: 2808 |
The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
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| PubMed | Europe PMC
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
2013 | Journal Article | IST-REx-ID: 2818 |
Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
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| arXiv
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
2013 | Journal Article | IST-REx-ID: 2822 |
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
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| PubMed | Europe PMC
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
2013 | Journal Article | IST-REx-ID: 2842 |
Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
2013 | Conference Paper | IST-REx-ID: 2906 |
3D kinetic alpha complexes and their implementation
M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
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M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
2013 | Journal Article | IST-REx-ID: 6128 |
Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans
E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono, PLoS Genetics 9 (2013).
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E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono, PLoS Genetics 9 (2013).
2013 | Journal Article | IST-REx-ID: 2944
Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
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S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
2013 | Research Data Reference | IST-REx-ID: 9754 |
Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies
J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013).
[Published Version]
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J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013).
2013 | Book Chapter | IST-REx-ID: 10900
Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse Ear Preparations
M. Weber, M.K. Sixt, in:, A. Cardona, E. Ubogu (Eds.), Chemokines, Humana Press, Totowa, NJ, 2013, pp. 215–226.
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| PubMed | Europe PMC
M. Weber, M.K. Sixt, in:, A. Cardona, E. Ubogu (Eds.), Chemokines, Humana Press, Totowa, NJ, 2013, pp. 215–226.
2013 | Conference Paper | IST-REx-ID: 2272 |
Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.
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R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.
2012 | Conference Paper | IST-REx-ID: 11795
On multiple keyword sponsored search auctions with budgets
R. Colini-Baldeschi, M.H. Henzinger, S. Leonardi, M. Starnberger, in:, 39th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2012, pp. 1–12.
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R. Colini-Baldeschi, M.H. Henzinger, S. Leonardi, M. Starnberger, in:, 39th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2012, pp. 1–12.
2012 | Journal Article | IST-REx-ID: 2079
crdbrd: Shape fabrication by sliding planar slices
K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592.
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K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592.
2012 | Journal Article | IST-REx-ID: 2103
Coupled 3D reconstruction of sparse facial hair and skin
T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M. Groß, ACM Transactions on Graphics 31 (2012).
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| DOI
T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M. Groß, ACM Transactions on Graphics 31 (2012).
2012 | Journal Article | IST-REx-ID: 2101
Fabricating articulated characters from skinned meshes
M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics 31 (2012).
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M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics 31 (2012).
2012 | Journal Article | IST-REx-ID: 2102
Physical face cloning
B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler, P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31 (2012).
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| DOI
B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler, P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31 (2012).
2012 | Conference Paper | IST-REx-ID: 2106
Data-driven estimation of cloth simulation models
E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy, S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528.
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E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy, S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528.
2012 | Conference Paper | IST-REx-ID: 2268 |
Analytic anti-aliasing of linear functions on polytopes
T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344.
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T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344.
2012 | Journal Article | IST-REx-ID: 2514
Mechanisms underlying signal filtering at a multisynapse contact
T. Budisantoso, K. Matsui, N. Kamasawa, Y. Fukazawa, R. Shigemoto, Journal of Neuroscience 32 (2012) 2357–2376.
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T. Budisantoso, K. Matsui, N. Kamasawa, Y. Fukazawa, R. Shigemoto, Journal of Neuroscience 32 (2012) 2357–2376.
2012 | Conference Paper | IST-REx-ID: 2825
Dynamic pruning of factor graphs for maximum marginal prediction
C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
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C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
2012 | Preprint | IST-REx-ID: 2928 |
Generalized sequential tree-reweighted message passing
V. Kolmogorov, T. Schoenemann, ArXiv (2012).
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| arXiv
V. Kolmogorov, T. Schoenemann, ArXiv (2012).
2012 | Journal Article | IST-REx-ID: 3164
Guest editorial: Special issue on structured prediction and inference
M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
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M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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| DOI
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
2012 | Journal Article | IST-REx-ID: 3248 |
Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components
C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.
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C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.