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244 Publications
2018 | Book Chapter | IST-REx-ID: 153
J. Renkawitz, A. Reversat, A. F. Leithner, J. Merrin, and M. K. Sixt, “Micro-engineered ‘pillar forests’ to study cell migration in complex but controlled 3D environments,” in Methods in Cell Biology, vol. 147, Academic Press, 2018, pp. 79–91.
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2018 | Journal Article | IST-REx-ID: 276 |
C. Frick et al., “Nano-scale microfluidics to study 3D chemotaxis at the single cell level,” PLoS One, vol. 13, no. 6. Public Library of Science, 2018.
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2018 | Journal Article | IST-REx-ID: 14 |
S. Hille, M. Akhmanova, M. Glanc, A. J. Johnson, and J. Friml, “Relative contribution of PIN-containing secretory vesicles and plasma membrane PINs to the directed auxin transport: Theoretical estimation,” International Journal of Molecular Sciences, vol. 19, no. 11. MDPI, 2018.
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2018 | Journal Article | IST-REx-ID: 326 |
K. Sawada, R. Kawakami, R. Shigemoto, and T. Nemoto, “Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices,” European Journal of Neuroscience, vol. 47, no. 9. Wiley, pp. 1033–1042, 2018.
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2018 | Journal Article | IST-REx-ID: 5976 |
L. Malomo et al., “FlexMaps: Computational design of flat flexible shells for shaping 3D objects,” ACM Transactions on Graphics, vol. 37, no. 6. Association for Computing Machinery (ACM), 2018.
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2018 | Journal Article | IST-REx-ID: 6003 |
B. Bickel, P. Cignoni, L. Malomo, and N. Pietroni, “State of the art on stylized fabrication,” Computer Graphics Forum, vol. 37, no. 6. Wiley, pp. 325–342, 2018.
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2018 | Journal Article | IST-REx-ID: 163 |
S. Reipert et al., “Agitation modules: Flexible means to accelerate automated freeze substitution,” Journal of Histochemistry and Cytochemistry, vol. 66, no. 12. SAGE Publications, pp. 903–921, 2018.
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2017 | Journal Article | IST-REx-ID: 11567 |
A. Stroe, D. Sobral, J. J. Matthee, J. Calhau, and I. Oteo, “A 1.4 deg2 blind survey for C II], C III] and C IV at z ∼ 0.7–1.5 – II. Luminosity functions and cosmic average line ratios,” Monthly Notices of the Royal Astronomical Society, vol. 471, no. 3. Oxford University Press, pp. 2575–2586, 2017.
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| arXiv
2017 | Journal Article | IST-REx-ID: 484 |
P. Nam and M. M. Napiórkowski, “Bogoliubov correction to the mean-field dynamics of interacting bosons,” Advances in Theoretical and Mathematical Physics, vol. 21, no. 3. International Press, pp. 683–738, 2017.
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2017 | Journal Article | IST-REx-ID: 698 |
Y. Wang, M. Nagarajan, C. Uhler, and G. Shivashankar, “Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression,” Molecular Biology of the Cell, vol. 28, no. 14. American Society for Cell Biology, pp. 1997–2009, 2017.
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2017 | Journal Article | IST-REx-ID: 722 |
E. Morris et al., “Shaping 3D root system architecture,” Current Biology, vol. 27, no. 17. Cell Press, pp. R919–R930, 2017.
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2017 | Journal Article | IST-REx-ID: 7757
J. W. Rocks, N. Pashine, I. Bischofberger, C. P. Goodrich, A. J. Liu, and S. R. Nagel, “Designing allostery-inspired response in mechanical networks,” Proceedings of the National Academy of Sciences, vol. 114, no. 10. Proceedings of the National Academy of Sciences, pp. 2520–2525, 2017.
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2017 | Journal Article | IST-REx-ID: 817 |
B. Turoňová, F. K. Schur, W. Wan, and J. Briggs, “Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å,” Journal of Structural Biology, vol. 199, no. 3. Academic Press, pp. 187–195, 2017.
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2017 | Journal Article | IST-REx-ID: 8240 |
J. Singer, T. W. Grunt, E. Jensen-Jarolim, and J. Singer, “Long term storage in liquid nitrogen leads to only minor phenotypic and gene expression changes in the mammary carcinoma model cell line BT474,” Oncotarget, vol. 8. Impact Journals, pp. 35076–35087, 2017.
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2017 | Journal Article | IST-REx-ID: 486 |
O. Elek et al., “Scattering-aware texture reproduction for 3D printing,” ACM Transactions on Graphics, vol. 36, no. 6. ACM, 2017.
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2017 | Conference Paper | IST-REx-ID: 1002 |
R. Zhang, T. Auzinger, D. Ceylan, W. Li, and B. Bickel, “Functionality-aware retargeting of mechanisms to 3D shapes,” presented at the SIGGRAPH: Computer Graphics and Interactive Techniques, Los Angeles, CA, United States , 2017, vol. 36, no. 4.
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2017 | Conference Paper | IST-REx-ID: 1001 |
R. Guseinov, E. Miguel, and B. Bickel, “CurveUps: Shaping objects from flat plates with tension-actuated curvature,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States, 2017, vol. 36, no. 4.
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2017 | Journal Article | IST-REx-ID: 994 |
I. Cherepanov and M. Lemeshko, “Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules,” Physical Review Materials, vol. 1, no. 3. American Physical Society, 2017.
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2016 | Conference Paper | IST-REx-ID: 1099 |
L. Malomo, N. Pietroni, B. Bickel, and P. Cignoni, “FlexMolds: Automatic design of flexible shells for molding,” presented at the SIGGRAPH Asia: Conference and Exhibition on Computer Graphics and Interactive Techniques in Asia, Macao, China, 2016, vol. 35, no. 6.
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2016 | Conference Paper | IST-REx-ID: 1115 |
A. Rueda et al., “Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator,” presented at the CLEO: Conference on Lasers and Electro Optics, San Jose, CA, USA, 2016.
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2016 | Journal Article | IST-REx-ID: 983 |
A. Potter, M. Serbyn, and A. Vishwanath, “Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level,” Physical Review X, vol. 6, no. 3. American Physical Society, 2016.
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2016 | Journal Article | IST-REx-ID: 1263 |
A. Rueda et al., “Efficient microwave to optical photon conversion: An electro-optical realization,” Optica, vol. 3, no. 6. Optica Publishing Group, pp. 597–604, 2016.
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2016 | Journal Article | IST-REx-ID: 14302
E. Stahl, F. M. Praetorius, C. C. de Oliveira Mann, K.-P. Hopfner, and H. Dietz, “Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth,” ACS Nano, vol. 10, no. 10. American Chemical Society, pp. 9156–9164, 2016.
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2016 | Journal Article | IST-REx-ID: 14304
T. G. Martin et al., “Design of a molecular support for cryo-EM structure determination,” PNAS, vol. 113, no. 47. Proceedings of the National Academy of Sciences, pp. E7456–E7463, 2016.
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2015 | Journal Article | IST-REx-ID: 11668 |
R. Colini-Baldeschi, S. Leonardi, M. H. Henzinger, and M. Starnberger, “On multiple keyword sponsored search auctions with budgets,” ACM Transactions on Economics and Computation, vol. 4, no. 1. Association for Computing Machinery, 2015.
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2015 | Conference Paper | IST-REx-ID: 1483 |
J. Reininghaus, S. Huber, U. Bauer, and R. Kwitt, “A stable multi-scale kernel for topological machine learning,” presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, USA, 2015, pp. 4741–4748.
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2015 | Book Chapter | IST-REx-ID: 1596 |
R. Fulek and R. Radoičić, “Vertical visibility among parallel polygons in three dimensions,” in Graph Drawing and Network Visualization, vol. 9411, Springer Nature, 2015, pp. 373–379.
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2015 | Conference Paper | IST-REx-ID: 1625
A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, and M. Gross, “Detailed spatio-temporal reconstruction of eyelids,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States, 2015, vol. 34, no. 4.
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2015 | Conference Paper | IST-REx-ID: 1628 |
C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, and M. Gross, “Microstructures to control elasticity in 3D printing,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, USA, 2015, vol. 34, no. 4.
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2015 | Conference Paper | IST-REx-ID: 1630 |
P. Guerrero, S. Jeschke, M. Wimmer, and P. Wonka, “Learning shape placements by example,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States, 2015, vol. 34, no. 4.
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2015 | Journal Article | IST-REx-ID: 1684 |
B. Vicoso and D. Bachtrog, “Numerous transitions of sex chromosomes in Diptera,” PLoS Biology, vol. 13, no. 4. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1817 |
Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
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2015 | Journal Article | IST-REx-ID: 1879 |
Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
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2015 | Journal Article | IST-REx-ID: 7456
D. Caruntu, T. Rostamzadeh, T. Costanzo, S. Salemizadeh Parizi, and G. Caruntu, “Solvothermal synthesis and controlled self-assembly of monodisperse titanium-based perovskite colloidal nanocrystals,” Nanoscale, vol. 7, no. 30. RSC, pp. 12955–12969, 2015.
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2015 | Journal Article | IST-REx-ID: 1793 |
O. Symonova, C. Topp, and H. Edelsbrunner, “DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots,” PLoS One, vol. 10, no. 6. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1537 |
V. Ruprecht et al., “Cortical contractility triggers a stochastic switch to fast amoeboid cell motility,” Cell, vol. 160, no. 4. Cell Press, pp. 673–685, 2015.
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2014 | Book Chapter | IST-REx-ID: 10893
J. Kasten, J. Reininghaus, W. Reich, and G. Scheuermann, “Toward the extraction of saddle periodic orbits,” in Topological Methods in Data Analysis and Visualization III , vol. 1, P.-T. Bremer, I. Hotz, V. Pascucci, and R. Peikert, Eds. Cham: Springer, 2014, pp. 55–69.
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2014 | Journal Article | IST-REx-ID: 1930
D. Günther, A. Jacobson, J. Reininghaus, H. Seidel, O. Sorkine Hornung, and T. Weinkauf, “Fast and memory-efficient topological denoising of 2D and 3D scalar fields,” IEEE Transactions on Visualization and Computer Graphics, vol. 20, no. 12. IEEE, pp. 2585–2594, 2014.
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2014 | Conference Paper | IST-REx-ID: 2058 |
K. Raveendran, C. Wojtan, N. Thuerey, and G. Türk, “Blending liquids,” in ACM Transactions on Graphics, Vancouver, Canada, 2014, vol. 33, no. 4.
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2014 | Conference Paper | IST-REx-ID: 2080
M. Bac̈Her, E. Whiting, B. Bickel, and O. Sorkine Hornung, “Spin-It: Optimizing moment of inertia for spinnable objects,” presented at the SIGGRAPH: 41st International Conference and Exhibition on Computer Graphics and Interactive Techniques, 2014, vol. 33, no. 4.
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2014 | Journal Article | IST-REx-ID: 2261 |
F. Zhu et al., “DICE, an efficient system for iterative genomic editing in human pluripotent stem cells,” Nucleic Acids Research, vol. 42, no. 5. Oxford University Press, 2014.
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2013 | Journal Article | IST-REx-ID: 11520 |
D. Sobral et al., “The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS,” The Astrophysical Journal, vol. 779, no. 2. IOP Publishing, 2013.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2471 |
I. Sanchez-Romero et al., “Mechanism of protein kinetic stabilization by engineered disulfide crosslinks,” PLoS One, vol. 8, no. 7. Public Library of Science, 2013.
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2013 | Journal Article | IST-REx-ID: 2822 |
C. Topp et al., “3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture,” PNAS, vol. 110, no. 18. National Academy of Sciences, pp. E1695–E1704, 2013.
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| PubMed | Europe PMC
2013 | Conference Paper | IST-REx-ID: 2906 |
M. Kerber and H. Edelsbrunner, “3D kinetic alpha complexes and their implementation,” in 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, New Orleans, LA, United States, 2013, pp. 70–77.
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2013 | Journal Article | IST-REx-ID: 6128 |
E. Kodama-Namba, L. A. Fenk, A. J. Bretscher, E. Gross, K. E. Busch, and M. de Bono, “Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans,” PLoS Genetics, vol. 9, no. 12. Public Library of Science (PLoS), 2013.
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2013 | Book Chapter | IST-REx-ID: 10900
M. Weber and M. K. Sixt, “Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse Ear Preparations,” in Chemokines, vol. 1013, A. Cardona and E. Ubogu, Eds. Totowa, NJ: Humana Press, 2013, pp. 215–226.
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2012 | Conference Paper | IST-REx-ID: 11795
R. Colini-Baldeschi, M. H. Henzinger, S. Leonardi, and M. Starnberger, “On multiple keyword sponsored search auctions with budgets,” in 39th International Colloquium on Automata, Languages, and Programming, Warwick, United Kingdom, 2012, vol. 7392, pp. 1–12.
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2012 | Conference Paper | IST-REx-ID: 2268 |
T. Auzinger, M. Guthe, and S. Jeschke, “Analytic anti-aliasing of linear functions on polytopes,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 121, pp. 335–344.
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2012 | Journal Article | IST-REx-ID: 3248 |
C. Lampert and J. Peters, “Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components,” Journal of Real-Time Image Processing, vol. 7, no. 1. Springer, pp. 31–41, 2012.
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2012 | Journal Article | IST-REx-ID: 8466
E. Rennella, T. Cutuil, P. Schanda, I. Ayala, V. Forge, and B. Brutscher, “Real-time NMR characterization of structure and dynamics in a transiently populated protein folding intermediate,” Journal of the American Chemical Society, vol. 134, no. 19. American Chemical Society, pp. 8066–8069, 2012.
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2011 | Journal Article | IST-REx-ID: 3505 |
M. K. Sixt and T. Lämmermann, “In vitro analysis of chemotactic leukocyte migration in 3D environments,” Cell Migration, vol. 769. Springer, pp. 149–165, 2011.
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2011 | Conference Poster | IST-REx-ID: 3312 |
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, and P. Benfey, Detailed reconstruction of 3D plant root shape. IEEE, 2011.
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2010 | Journal Article | IST-REx-ID: 2095 |
T. Beeler, B. Bickel, P. Beardsley, B. Sumner, and M. Groß, “High-quality single-shot capture of facial geometry,” ACM Transactions on Graphics, vol. 29, no. 4. ACM, 2010.
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2010 | Journal Article | IST-REx-ID: 3960 |
M. Weber and M. K. Sixt, “MEK signalling tunes actin treadmilling for interstitial lymphocyte migration,” EMBO Journal, vol. 29, no. 17. Wiley-Blackwell, pp. 2861–2863, 2010.
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2009 | Journal Article | IST-REx-ID: 2384 |
A. Giuliani and R. Seiringer, “The ground state energy of the weakly interacting Bose gas at high density,” Journal of Statistical Physics, vol. 135, no. 5–6. Springer, pp. 915–934, 2009.
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2009 | Conference Poster | IST-REx-ID: 3717
C. Lampert and J. Peters, A high-speed object tracker from off-the-shelf components. IEEE, 2009.
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2007 | Conference Paper | IST-REx-ID: 3191
V. Kolmogorov, Y. Boykov, and C. Rother, “Applications of parametric maxflow in computer vision,” presented at the ICCV: International Conference on Computer Vision, 2007.
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2006 | Conference Paper | IST-REx-ID: 2077
B. Bickel, M. Wicke, and M. Gross, “Adaptive simulation of electrical discharges,” presented at the VMV: Vision, Modeling, and Visualization, 2006.
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2006 | Conference Paper | IST-REx-ID: 3683
C. Lampert and T. Breuel, “Objective quality measurement for geometric document image restoration,” presented at the DAS: Document Analysis Systems, 2006.
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2006 | Patent | IST-REx-ID: 3512 |
Y. Fletcher, T. Gloth, H. Edelsbrunner, and P. Fu, “Method, apparatus and computer products that reconstruct surfaces from data points.” 2006.
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