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144 Publications
2024 | Journal Article | IST-REx-ID: 14826 | 
A. Kuhn et al., “RAF-like protein kinases mediate a deeply conserved, rapid auxin response,” Cell, vol. 187, no. 1. Elsevier, p. 130–148.e17, 2024.
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2024 | Journal Article | IST-REx-ID: 14850 |
A. Pal, M. Joshi, and M. Thaker, “Too much information? Males convey parasite levels using more signal modalities than females utilise,” Journal of Experimental Biology, vol. 227, no. 1. The Company of Biologists, 2024.
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2024 | Journal Article | IST-REx-ID: 15033 |
M. Adamowski, I. Matijevic, and J. Friml, “Developmental patterning function of GNOM ARF-GEF mediated from the cell periphery,” eLife, vol. 13. eLife Sciences Publications, 2024.
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2024 | Journal Article | IST-REx-ID: 14979 |
J. Datler et al., “Multi-modal cryo-EM reveals trimers of protein A10 to form the palisade layer in poxvirus cores,” Nature Structural & Molecular Biology. Springer Nature, 2024.
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2024 | Journal Article | IST-REx-ID: 15257 |
I. Kulich, J. Schmid, A. Teplova, L. Qi, and J. Friml, “Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism,” eLife, vol. 12. eLife Sciences Publications, 2024.
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2023 | Journal Article | IST-REx-ID: 12163 |
M. Loose, A. Auer, G. Brognara, H. R. Budiman, L. M. Kowalski, and I. Matijevic, “In vitro reconstitution of small GTPase regulation,” FEBS Letters, vol. 597, no. 6. Wiley, pp. 762–777, 2023.
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2023 | Journal Article | IST-REx-ID: 13989 |
J. Hales et al., “Witnessing light-driven entanglement using time-resolved resonant inelastic X-ray scattering,” Nature Communications, vol. 14. Springer Nature, 2023.
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2023 | Journal Article | IST-REx-ID: 14639 |
Lin S-J, Vona B, Lau T, Huang K, Zaki MS, Aldeen HS, Karimiani EG, Rocca C, Noureldeen MM, Saad AK, Petree C, Bartolomaeus T, Abou Jamra R, Zifarelli G, Gotkhindikar A, Wentzensen IM, Liao M, Cork EE, Varshney P, Hashemi N, Mohammadi MH, Rad A, Neira J, Toosi MB, Knopp C, Kurth I, Challman TD, Smith R, Abdalla A, Haaf T, Suri M, Joshi M, Chung WK, Moreno-De-Luca A, Houlden H, Maroofian R, Varshney GK. 2023. Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity. Genome Medicine. 15, 102.
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2023 | Journal Article | IST-REx-ID: 14077 |
G. Puixeu Sala, A. Macon, and B. Vicoso, “Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster,” G3: Genes, Genomes, Genetics, vol. 13, no. 8. Oxford University Press, 2023.
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2023 | Journal Article | IST-REx-ID: 14683 |
N. Amberg, G. T. Cheung, and S. Hippenmeyer, “Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry,” STAR Protocols, vol. 5, no. 1. Elsevier, 2023.
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2023 | Journal Article | IST-REx-ID: 14742 |
K. Lucek et al., “The impact of chromosomal rearrangements in speciation: From micro- to macroevolution,” Cold Spring Harbor Perspectives in Biology, vol. 15, no. 11. Cold Spring Harbor Laboratory, 2023.
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2023 | Journal Article | IST-REx-ID: 14770
J. G. Danzl and P. Velicky, “LIONESS enables 4D nanoscale reconstruction of living brain tissue,” Nature Methods, vol. 20, no. 8. Springer Nature, pp. 1141–1142, 2023.
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2023 | Journal Article | IST-REx-ID: 14774 |
R. K. Harish et al., “Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation,” Development, vol. 150, no. 19. The Company of Biologists, 2023.
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2023 | Journal Article | IST-REx-ID: 14776 |
A. Teplova et al., “Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3,” International Journal of Molecular Sciences, vol. 24, no. 22. MDPI, 2023.
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2023 | Journal Article | IST-REx-ID: 14781 |
K. J. Westerich et al., “Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1,” Developmental Cell, vol. 58, no. 17. Elsevier, p. 1578–1592.e5, 2023.
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2023 | Journal Article | IST-REx-ID: 12802 |
L. Knaus et al., “Large neutral amino acid levels tune perinatal neuronal excitability and survival,” Cell, vol. 186, no. 9. Elsevier, p. 1950–1967.e25, 2023.
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2023 | Journal Article | IST-REx-ID: 15149 |
L. Isbel et al., “Readout of histone methylation by Trim24 locally restricts chromatin opening by p53,” Nature Structural & Molecular Biology, vol. 30, no. 7. Springer Nature, pp. 948–957, 2023.
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2023 | Journal Article | IST-REx-ID: 14613 |
C. Lasne, M. N. Elkrewi, M. A. Toups, L. A. Layana Franco, A. Macon, and B. Vicoso, “The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome,” Molecular Biology and Evolution, vol. 40, no. 12. Oxford University Press, 2023.
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2022 | Journal Article | IST-REx-ID: 11713 |
N. Nikolic, M. Sauert, T. G. Albanese, and I. Moll, “Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli,” BMC Research Notes, vol. 15. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12156 |
B. Zoller, T. Gregor, and G. Tkačik, “Eukaryotic gene regulation at equilibrium, or non?,” Current Opinion in Systems Biology, vol. 31, no. 9. Elsevier, 2022.
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2022 | Journal Article | IST-REx-ID: 12670 |
S. He and X. Feng, “DNA methylation dynamics during germline development,” Journal of Integrative Plant Biology, vol. 64, no. 12. Wiley, pp. 2240–2251, 2022.
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2022 | Journal Article | IST-REx-ID: 11167 |
D. Kampjut and L. A. Sazanov, “Structure of respiratory complex I – An emerging blueprint for the mechanism,” Current Opinion in Structural Biology, vol. 74. Elsevier, 2022.
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2022 | Journal Article | IST-REx-ID: 11351 |
W. J. Nicolas, F. Fäßler, P. Dutka, F. K. Schur, G. Jensen, and E. Meyerowitz, “Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks,” Current Biology, vol. 32, no. 11. Elsevier, pp. P2375-2389, 2022.
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2022 | Journal Article | IST-REx-ID: 11460 |
Z. A. Schaaf et al., “WDFY3 mutation alters laminar position and morphology of cortical neurons,” Molecular Autism, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 11448 |
L. Gonzalez Somermeyer et al., “Heterogeneity of the GFP fitness landscape and data-driven protein design,” eLife, vol. 11. eLife Sciences Publications, 2022.
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2022 | Journal Article | IST-REx-ID: 11447 |
R. J. Saona Urmeneta, F. Kondrashov, and K. Khudiakova, “Relation between the number of peaks and the number of reciprocal sign epistatic interactions,” Bulletin of Mathematical Biology, vol. 84, no. 8. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 11546 |
A. M. Westram, R. Faria, K. Johannesson, R. Butlin, and N. H. Barton, “Inversions and parallel evolution,” Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 377, no. 1856. Royal Society of London, 2022.
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2022 | Journal Article | IST-REx-ID: 11951 |
Y. Ben Simon, K. Käfer, P. Velicky, J. L. Csicsvari, J. G. Danzl, and P. M. Jonas, “A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory,” Nature Communications, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12051 |
J. L. Daiß et al., “The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans,” Life Science Alliance, vol. 5, no. 11. Life Science Alliance, 2022.
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2022 | Journal Article | IST-REx-ID: 12130 |
J. Huang et al., “Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis,” Nature Communications, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12143 |
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
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2022 | Journal Article | IST-REx-ID: 12152 |
X. Jiang et al., “Modelling membrane reshaping by staged polymerization of ESCRT-III filaments,” PLOS Computational Biology, vol. 18, no. 10. Public Library of Science, 2022.
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2022 | Journal Article | IST-REx-ID: 12157 |
L. Hayward and G. Sella, “Polygenic adaptation after a sudden change in environment,” eLife, vol. 11. eLife Sciences Publications, 2022.
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2022 | Journal Article | IST-REx-ID: 12208 |
C. Prehal et al., “On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering,” Nature Communications, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12217 |
S. Randriamanantsoa et al., “Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids,” Nature Communications, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12224 |
M. W. Muhia et al., “Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity relevant to behavioral and cognitive processes,” Communications Biology, vol. 5. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 12231 |
Y. S. Kogure et al., “Admp regulates tail bending by controlling ventral epidermal cell polarity via phosphorylated myosin localization in Ciona,” Development, vol. 149, no. 21. The Company of Biologists, 2022.
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2022 | Journal Article | IST-REx-ID: 12239 |
A. J. Johnson et al., “Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution,” Molecular Plant, vol. 15, no. 10. Elsevier, pp. 1533–1542, 2022.
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2022 | Journal Article | IST-REx-ID: 12245 |
X. Soto et al., “Sequential and additive expression of miR-9 precursors control timing of neurogenesis,” Development, vol. 149, no. 19. The Company of Biologists, 2022.
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2022 | Journal Article | IST-REx-ID: 12238
N. Hino et al., “A feedback loop between lamellipodial extension and HGF-ERK signaling specifies leader cells during collective cell migration,” Developmental Cell, vol. 57, no. 19. Elsevier, p. 2290–2304.e7, 2022.
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2022 | Journal Article | IST-REx-ID: 12261 |
A. Angermayr, T. Y. Pang, G. Chevereau, K. Mitosch, M. J. Lercher, and M. T. Bollenbach, “Growth‐mediated negative feedback shapes quantitative antibiotic response,” Molecular Systems Biology, vol. 18, no. 9. Embo Press, 2022.
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2022 | Journal Article | IST-REx-ID: 12262 |
M. Prattes et al., “Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1,” Nature Structural & Molecular Biology, vol. 29, no. 9. Springer Nature, pp. 942–953, 2022.
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2022 | Journal Article | IST-REx-ID: 12288 |
A. L. Sumser, M. A. Jösch, P. M. Jonas, and Y. Ben Simon, “Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling,” eLife, vol. 11. eLife Sciences Publications, 2022.
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2022 | Journal Article | IST-REx-ID: 12280 |
L. Schmid, C. Hilbe, K. Chatterjee, and M. Nowak, “Direct reciprocity between individuals that use different strategy spaces,” PLOS Computational Biology, vol. 18, no. 6. Public Library of Science, 2022.
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2022 | Journal Article | IST-REx-ID: 12275 |
M. Rahman, N. Ramirez, C. A. Diaz‐Balzac, and H. E. Bülow, “Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning,” EMBO Reports, vol. 23, no. 7. Embo Press, 2022.
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2022 | Journal Article | IST-REx-ID: 12120
H. Xiao et al., “Nitrate availability controls translocation of the transcription factor NAC075 for cell-type-specific reprogramming of root growth,” Developmental Cell, vol. 57, no. 23. Elsevier, p. 2638–2651.e6, 2022.
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2022 | Journal Article | IST-REx-ID: 12117 |
V. Hübschmann, M. Korkut, and S. Siegert, “Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay,” STAR Protocols, vol. 3, no. 4. Elsevier, 2022.
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2022 | Journal Article | IST-REx-ID: 11373 |
P. Radler et al., “In vitro reconstitution of Escherichia coli divisome activation,” Nature Communications, vol. 13. Springer Nature, 2022.
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2022 | Journal Article | IST-REx-ID: 10787 |
N. H. Barton and O. O. Olusanya, “The response of a metapopulation to a changing environment,” Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 377, no. 1848. The Royal Society, 2022.
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2022 | Journal Article | IST-REx-ID: 11160 |
C. E. Villa et al., “CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories,” Cell Reports, vol. 39, no. 1. Elsevier, 2022.
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2021 | Journal Article | IST-REx-ID: 11052
S. Krishna, R. Arrojo e Drigo, J. S. Capitanio, R. Ramachandra, M. Ellisman, and M. Hetzer, “Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain,” Developmental Cell, vol. 56, no. 21. Elsevier, p. P2952–2965.e9, 2021.
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2021 | Journal Article | IST-REx-ID: 12585 |
E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, and F. Pellicciotti, “Health and sustainability of glaciers in High Mountain Asia,” Nature Communications, vol. 12. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 13356 |
T. Bian and R. Klajn, “Morphology control in crystalline nanoparticle–polymer aggregates,” Annals of the New York Academy of Sciences, vol. 1505, no. 1. Wiley, pp. 191–201, 2021.
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2021 | Journal Article | IST-REx-ID: 8966 |
A. Schauer and C.-P. J. Heisenberg, “Reassembling gastrulation,” Developmental Biology, vol. 474. Elsevier, pp. 71–81, 2021.
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2021 | Journal Article | IST-REx-ID: 9387 |
K. Khudiakova, T. Y. Neretina, and A. S. Kondrashov, “Two linked loci under mutation-selection balance and Muller’s ratchet,” Journal of Theoretical Biology, vol. 524. Elsevier , 2021.
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2021 | Journal Article | IST-REx-ID: 9431 |
M. Obr et al., “Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer,” Nature Communications, vol. 12, no. 1. Nature Research, 2021.
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2021 | Journal Article | IST-REx-ID: 9540 |
M. Prattes et al., “Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 9778 |
D. H. Vandael, Y. Okamoto, and P. M. Jonas, “Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses,” Nature Communications, vol. 12, no. 1. Springer, 2021.
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2021 | Journal Article | IST-REx-ID: 10163 |
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
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2021 | Journal Article | IST-REx-ID: 10301 |
M. J. Conde-Dusman et al., “Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GIT1/mTORC1 assembly,” eLife, vol. 10. eLife Sciences Publications, 2021.
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2021 | Journal Article | IST-REx-ID: 10310 |
M. O. Çoruh et al., “Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster,” Communications Biology, vol. 4, no. 1. Springer , 2021.
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2021 | Journal Article | IST-REx-ID: 10533 |
J. Choi, D. B. Lyons, and D. Zilberman, “Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin,” eLife, vol. 10. eLife Sciences Publications, 2021.
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2021 | Journal Article | IST-REx-ID: 10834 |
S. Stahnke et al., “Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis, and integrin-mediated adhesion,” Current Biology, vol. 31, no. 10. Elsevier, p. 2051–2064.e8, 2021.
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2021 | Journal Article | IST-REx-ID: 8997 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” PLOS Computational Biology, vol. 17. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 9283 |
A. A. Nagy-Staron et al., “Local genetic context shapes the function of a gene regulatory network,” eLife, vol. 10. eLife Sciences Publications, 2021.
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2021 | Journal Article | IST-REx-ID: 15151 |
A. K. Michael and N. H. Thomä, “Reading the chromatinized genome,” Cell, vol. 184, no. 14. Elsevier, pp. 3599–3611, 2021.
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2021 | Journal Article | IST-REx-ID: 15262 |
D. J. Vinter, C. Hoppe, T. Minchington, C. Sutcliffe, and H. L. Ashe, “Dynamics of hunchback translation in real-time and at single-mRNA resolution in the Drosophila embryo,” Development, vol. 148, no. 18. The Company of Biologists, 2021.
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2021 | Journal Article | IST-REx-ID: 15276 |
F. Navarrete et al., “The Pleiades are a cluster of fungal effectors that inhibit host defenses,” PLOS Pathogens, vol. 17, no. 6. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 15273 |
T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse,” eLife, vol. 10. eLife Sciences Publications, 2021.
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2021 | Journal Article | IST-REx-ID: 15272 |
L. T. H. Tang et al., “The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning,” PLOS Genetics, vol. 17, no. 7. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 9429 |
J. Morandell et al., “Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
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2020 | Journal Article | IST-REx-ID: 10348 |
A.-K. Pfitzner et al., “An ESCRT-III polymerization sequence drives membrane deformation and fission,” Cell, vol. 182, no. 5. Elsevier, p. 1140–1155.e18, 2020.
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2020 | Journal Article | IST-REx-ID: 11056 |
S. Bersini, R. Arrojo e Drigo, L. Huang, M. N. Shokhirev, and M. Hetzer, “Transcriptional and functional changes of the human microvasculature during physiological aging and Alzheimer disease,” Advanced Biosystems, vol. 4, no. 5. Wiley, 2020.
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2020 | Journal Article | IST-REx-ID: 11055 |
S. Bersini, R. Schulte, L. Huang, H. Tsai, and M. Hetzer, “Direct reprogramming of human smooth muscle and vascular endothelial cells reveals defects associated with aging and Hutchinson-Gilford progeria syndrome,” eLife, vol. 9. eLife Sciences Publications, 2020.
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2020 | Journal Article | IST-REx-ID: 11058 |
S. Bersini, N. K. Lytle, R. Schulte, L. Huang, G. M. Wahl, and M. Hetzer, “Nup93 regulates breast tumor growth by modulating cell proliferation and actin cytoskeleton remodeling,” Life Science Alliance, vol. 3, no. 1. Life Science Alliance, 2020.
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2020 | Journal Article | IST-REx-ID: 8402 |
H. Rampelt et al., “The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments,” BMC Biology, vol. 18. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 12189 |
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