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Roland Gansch

Gabriele Buchner-Kranzl

Anastasiia Heurteur

455 Publications

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2026 | Published | Thesis | IST-REx-ID: 18681

Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy
M. Tavakoli, Developing Molecular and Structural Tools for Studying Brain Architecture with Super Resolution Expansion Microscopy. LICONN: Molecularly-Informed Connectomics Reconstruction with Light Microscopy, Institute of Science and Technology Austria, 2026.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 18601 |

Protocol for fabricating elastomeric stencils for patterned stem cell differentiation
S. Rus, J. Merrin, M.A. Kulig, T. Minchington, A. Kicheva, STAR Protocols 5 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18674 |

Image analysis for brain tissue reconstruction with super-resolution light microscopy
J. Lyudchik, Image Analysis for Brain Tissue Reconstruction with Super-Resolution Light Microscopy, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18660 |

[Published Version] View | Files available | DOI

2024 | Research Data | IST-REx-ID: 18579 |

A thalamic hub-and-spoke network enables visual perception during action by coordinating visuomotor dynamics
T.A. Vega Zuniga, A.L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt, M.A. Jösch, (2024).

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2024 | Published | Journal Article | IST-REx-ID: 18596 |

A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis
M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 18653 |

Automated long-range compensation of an rf quantum dot sensor
J. Hickie, B. Van Straaten, F. Fedele, D. Jirovec, A. Ballabio, D. Chrastina, G. Isella, G. Katsaros, N. Ares, Physical Review Applied 22 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18588 |

Non equilibrium dynamics of driven individual particles and 3D printing across scales
C.N. Mweka, Non Equilibrium Dynamics of Driven Individual Particles and 3D Printing across Scales, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 18605 |

Moist convective scaling: Insights from an idealised model
L.N. Agasthya, C.J. Muller, M. Cheve, Quarterly Journal of the Royal Meteorological Society (2024).

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2024 | Published | Thesis | IST-REx-ID: 18574

Visual adaptations to natural statistics
D. Gupta, Visual Adaptations to Natural Statistics, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18568 |

Mechanisms of visual integration and competition in innate behaviours in Drosophila melanogaster
R.K. Satapathy, Mechanisms of Visual Integration and Competition in Innate Behaviours in Drosophila Melanogaster, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 18603 |

Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons
O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, P.M. Jonas, PLoS Biology 22 (2024).

[Published Version] View | Files available | DOI

2024 | In Press | Journal Article | IST-REx-ID: 18553 |

STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment
A.R. Ramadhin, S.-H. Lee, D. Zhou, A.P. Testa Salmazo, C. Gonzalo-Hansen, M. van Sluis, C.M.A. Blom, R.C. Janssens, A. Raams, D. Dekkers, K. Bezstarosti, D. Slade, W. Vermeulen, A. Pines, J.A.A. Demmers, C. Bernecky, T.K. Sixma, J.A. Marteijn, Molecular Cell (n.d.).

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2024 | Published | Thesis | IST-REx-ID: 18531

Early stages of sex chromosome evolution
A. Mrnjavac, Early Stages of Sex Chromosome Evolution, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18515 |

Effect of population structure on neutral genetic variation and barriers to gene exchange
P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18477

Biochemical and structural insights into ADAR1 RNA editing
B.M. Kaczmarek, Biochemical and Structural Insights into ADAR1 RNA Editing, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18471

Visualizing the neuronal transcriptional landscape with tissue context
N. Agudelo Duenas, Visualizing the Neuronal Transcriptional Landscape with Tissue Context, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 18444 |

Bilateral interactions of optic-flow sensitive neurons coordinate course control in flies
V. Pokusaeva, R.K. Satapathy, O. Symonova, M.A. Jösch, Nature Communications 15 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18101

Structural characterization of spumavirus capsid assemblies
D. Porley Esteves, Structural Characterization of Spumavirus Capsid Assemblies, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18129

Strong charge-photon coupling in Germanium enabled by granular aluminium superinductors
M. Janik, Strong Charge-Photon Coupling in Germanium Enabled by Granular Aluminium Superinductors, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18104

Everyday electromechanics: Capacitive strong coupling to mechanical motion
D. Puglia, Everyday Electromechanics: Capacitive Strong Coupling to Mechanical Motion, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 18076 |

Hybrid circuits on planar Germanium
O. Sagi, Hybrid Circuits on Planar Germanium, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17881

Thermal effects in one dimensional Josephson chains
S. Mukhopadhyay, Thermal Effects in One Dimensional Josephson Chains, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17850 |

Fitness landscapes of orthologous green fluorescent proteins
L. Gonzalez Somermeyer, Fitness Landscapes of Orthologous Green Fluorescent Proteins, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17884 |

Distinct stabilization of the human T cell leukemia virus type 1 immature Gag lattice
M. Obr, M. Percipalle, D. Chernikova, H. Yang, A. Thader, G. Pinke, D.J. Porley, L.M. Mansky, R.A. Dick, F.K. Schur, Nature Structural & Molecular Biology (2024).

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2024 | Published | Thesis | IST-REx-ID: 17485 |

Compressing large neural networks : Algorithms, systems and scaling laws
E. Frantar, Compressing Large Neural Networks : Algorithms, Systems and Scaling Laws, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17490 |

Communication-efficient distributed training of deep neural networks: An algorithms and systems perspective
I. Markov, Communication-Efficient Distributed Training of Deep Neural Networks: An Algorithms and Systems Perspective, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Conference Paper | IST-REx-ID: 18121 |

SPADE: Sparsity-guided debugging for deep neural networks
A.S. Moakhar, E.B. Iofinova, E. Frantar, D.-A. Alistarh, in:, Proceedings of the 41st International Conference on Machine Learning, ML Research Press, 2024, pp. 45955–45987.

[Preprint] View | Files available | Download Preprint (ext.) | arXiv

2024 | Research Data | IST-REx-ID: 17488 |

Bilateral interactions of optic-flow sensitive neurons coordinate course control in flies
R.K. Satapathy, M.A. Jösch, O. Symonova, V. Pokusaeva, (2024).

View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17890 |

Single-nucleus atlas of the Artemia female reproductive system suggests germline repression of the Z chromosome
M.N. Elkrewi, B. Vicoso, PLoS Genetics (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 17885 |

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation
L. Kofler, L. Grundmann, M. Gerhalter, M. Prattes, J. Merl-Pham, G. Zisser, I. Grishkovskaya, V.-V. Hodirnau, M. Vareka, R. Breinbauer, S.M. Hauck, D. Haselbach, H. Bergler, Nature Communications 15 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17465 |

High-dimensional limits in artificial neural networks
A. Shevchenko, High-Dimensional Limits in Artificial Neural Networks, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Submitted | Preprint | IST-REx-ID: 17468 |

Individual Marcus-type kinetics controls singlet and triplet oxygen evolution from superoxide
S. Mondal, H.T.K. Nguyen, R. Hauschild, S.A. Freunberger, ChemRxiv (n.d.).

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2024 | Published | Book Chapter | IST-REx-ID: 18052

Automated Imaging and Analysis of Synapses in Freeze-Fracture Replica Samples with Deep Learning
D. Kleindienst, T. Costanzo, R. Shigemoto, in:, J.H.R. Lübke, A. Rollenhagen (Eds.), New Aspects in Analyzing the Synaptic Organization of the Brain, 1st ed., Springer Nature, New York, 2024, pp. 123–137.

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2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17457 |

LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening
A. Ritzau-Jost, F. Gsell, J. Sell, S. Sachs, J.-C. Montanaro-Punzengruber, T. Kirmann, S. Maaß, S.R. Irani, C. Werner, C. Geis, M. Sauer, R. Shigemoto, S. Hallermann, Neurology, Neuroimmunology and Neuroinflammation 11 (2024) e200284.

2024 | Submitted | Preprint | IST-REx-ID: 18057 |

Dual relaxation oscillations in a Josephson junction array
S. Mukhopadhyay, D.A. Lancheros Naranjo, J.L. Senior, A.P. Higginbotham, ArXiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2024 | Published | Book Chapter | IST-REx-ID: 17425

Morphological Analysis of Neurons and Glia Using Mosaic Analysis with Double Markers
O. Miranda, G.T. Cheung, S. Hippenmeyer, in:, K. Toyooka (Ed.), Neuronal Morphogenesis, 1st ed., Springer Nature, New York, NY, 2024, pp. 283–299.

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2024 | Published | Preprint | IST-REx-ID: 18648 |

Causal inference for multiple risk factors and diseases from genomics data
N.N. Machnik, S.M. Mahmoudi, M. Borczyk, I. Krätschmer, M.J. Bauer, M.R. Robinson, BioRxiv (2024).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2024 | Research Data | IST-REx-ID: 17362 |

Data for: "Single-nucleus atlas of the Artemia female reproductive system suggests germline repression of the Z chromosome"
M.N. Elkrewi, B. Vicoso, (2024).

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 17202 |

A gate tunable transmon qubit in planar Ge
O. Sagi, A. Crippa, M. Valentini, M. Janik, L. Baghumyan, G. Fabris, L. Kapoor, F. Hassani, J.M. Fink, S. Calcaterra, D. Chrastina, G. Isella, G. Katsaros, Nature Communications 15 (2024).

[Published Version] View | Files available | DOI | arXiv

2024 | Published | Journal Article | IST-REx-ID: 17373 |

Beyond the blur: Using experimentally determined point spread functions to improve scanning Kelvin probe imaging
I.C. Lenton, F. Pertl, L.B. Shafeek, S.R. Waitukaitis, Journal of Applied Physics 136 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 17389 |

Cross-architecture tuning of silicon and SiGe-based quantum devices using machine learning
Severin B, Lennon DT, Camenzind LC, Vigneau F, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella G, de Kruijf M, Carballido MJ, Svab S, Kuhlmann AV, Geyer S, Froning FNM, Moon H, Osborne MA, Sejdinovic D, Katsaros G, Zumbühl DM, Briggs GAD, Ares N. 2024. Cross-architecture tuning of silicon and SiGe-based quantum devices using machine learning. Scientific Reports. 14, 17281.

[Published Version] View | Files available | DOI | arXiv

2024 | Published | Thesis | IST-REx-ID: 17319

Membrane proteins in plant physiology and bioenergetics: Investigating auxin efflux transporter PIN8 and ATP synthase inhibition by the novel inhibitor Yaku'amide B
K. Lukic, Membrane Proteins in Plant Physiology and Bioenergetics: Investigating Auxin Efflux Transporter PIN8 and ATP Synthase Inhibition by the Novel Inhibitor Yaku’amide B, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17208 |

Exploring the optimization landscape of variational quantum algorithms
R.A. Medina Ramos, Exploring the Optimization Landscape of Variational Quantum Algorithms, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Submitted | Preprint | IST-REx-ID: 18677 |

Light-microscopy based dense connectomic reconstruction of mammalian brain tissue
M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas, J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2024 | Published | Thesis | IST-REx-ID: 17206

Novel approaches to studying alternative splicing in Drosophila Melanogaster: Insights into sex-specific gene expression and the evolution of sex determination
J. Raices, Novel Approaches to Studying Alternative Splicing in Drosophila Melanogaster: Insights into Sex-Specific Gene Expression and the Evolution of Sex Determination, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17187 |

Protocol for quantitative reconstruction of cell lineage using mosaic analysis with double markers in mice
G.T. Cheung, C. Streicher, S. Hippenmeyer, STAR Protocols 5 (2024).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2024 | Research Data | IST-REx-ID: 17196 |

A gate-tunable transmon in planar Ge
O. Sagi, (2024).

[Published Version] View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17232 |

Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols 5 (2024).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2024 | Submitted | Preprint | IST-REx-ID: 18144 |

Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors
M. Janik, K.E.R. Roux, C.B. Espinosa, O. Sagi, A. Baghdadi, T. Adletzberger, S. Calcaterra, M. Botifoll, A.G. Manjón, J. Arbiol, D. Chrastina, G. Isella, I.M. Pop, G. Katsaros, ArXiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2024 | Published | Journal Article | IST-REx-ID: 17235 |

Effect of ion irradiation on superconducting thin films
K. Kohopää, A. Ronzani, R.N. Jabdaraghi, A. Bera, M. Ribeiro, D. Hazra, J.L. Senior, M. Prunnila, J. Govenius, J.S. Lehtinen, A. Kemppinen, APL Materials 12 (2024).

[Published Version] View | Files available | DOI

2024 | Research Data | IST-REx-ID: 17344 |

Mathematica notebook for "Effect of assortative mating and sexual selection on polygenic barriers to gene flow'
P. Surendranadh, H. Sachdeva, (2024).

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 14979 |

Multi-modal cryo-EM reveals trimers of protein A10 to form the palisade layer in poxvirus cores
J. Datler, J. Hansen, A. Thader, A. Schlögl, L.W. Bauer, V.-V. Hodirnau, F.K. Schur, Nature Structural & Molecular Biology 31 (2024) 1114–1123.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 15323

SCAF1 drives the compositional diversity of mammalian respirasomes
I. Vercellino, L.A. Sazanov, Nature Structural and Molecular Biology 31 (2024) 1061–1071.

[Submitted Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 15182 |

A route to high thermoelectric performance: Solution‐based control of microstructure and composition in Ag2Se
T. Kleinhanns, F. Milillo, M. Calcabrini, C. Fiedler, S. Horta, D. Balazs, M.J. Strumolo, R. Hasler, J. Llorca, M. Tkadletz, R.L. Brutchey, M. Ibáñez, Advanced Energy Materials 14 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 17133 |

Superconducting qubits capable of dynamic switching between protected and high-speed control regimes
F. Hassani, Superconducting Qubits Capable of Dynamic Switching between Protected and High-Speed Control Regimes, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 15301 |

Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization
L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá, S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J. Friml, Developmental Cell 59 (2024) 1333–1344.e4.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Research Data | IST-REx-ID: 15385 |

Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice
L. Burnett, P. Koppensteiner, O. Symonova, T. Masson, T.A. Vega Zuniga, X. Contreras, T. Rülicke, R. Shigemoto, G. Novarino, M.A. Jösch, (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 15352

Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording
J.S. Murmann, Investigating Acute Microglia Response to Seizure Activity in Vivo: Combining 2-Photon Imaging and EEG Recording, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Submitted | Preprint | IST-REx-ID: 18688 |

Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory
J.F. Watson, V. Vargas-Barroso, R.J. Morse-Mora, A. Navas-Olive, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2024 | Published | Journal Article | IST-REx-ID: 17124

Solution-processed, surface-engineered, polycrystalline CdSe-SnSe exhibiting low thermal conductivity
C. Fiedler, Y. Liu, M. Ibáñez, Journal of Visualized Experiments 2024 (2024).

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2024 | Published | Journal Article | IST-REx-ID: 15375 |

Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis
S. He, Y. Yu, L. Wang, J. Zhang, Z. Bai, G. Li, P. Li, X. Feng, The Plant Cell 36 (2024) 1829–1843.

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2024 | Epub ahead of print | Journal Article | IST-REx-ID: 15357 |

Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals
Y. Liu, S. Lee, C. Fiedler, M.C. Spadaro, C. Chang, M. Li, M. Hong, J. Arbiol, M. Ibáñez, Chemical Engineering Journal 490 (2024).

[Published Version] View | DOI | Download Published Version (ext.)

2024 | Published | Conference Paper | IST-REx-ID: 17147

Inference of genetic effects via approximate message passing
A. Depope, M. Mondelli, M.R. Robinson, in:, 2024 IEEE International Conference on Acoustics, Speech, and Signal Processing, IEEE, 2024, pp. 13151–13155.

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2024 | Published | Journal Article | IST-REx-ID: 15401 |

Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck
F. Napoli, J.-Y. Guan, C.-A. Arnaud, P. Macek, H. Fraga, C. Breyton, P. Schanda, Magnetic Resonance 5 (2024) 33–49.

[Published Version] View | Files available | DOI

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 15381 |

Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning
D.K. Rangel Guerrero, K. Balueva, U. Barayeu, P. Baracskay, I. Gridchyn, M. Nardin, C.N. Roth, P. Wulff, J.L. Csicsvari, Neuron (2024).

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2024 | Epub ahead of print | Journal Article | IST-REx-ID: 17052 |

Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials
C. Fiedler, M. Calcabrini, Y. Liu, M. Ibáñez, Angewandte Chemie - International Edition (2024).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2024 | Epub ahead of print | Journal Article | IST-REx-ID: 15313 |

Dynamics and scaling of internally cooled convection
L.N. Agasthya, C.J. Muller, Communications in Nonlinear Science and Numerical Simulation 134 (2024).

[Published Version] View | DOI | Download Published Version (ext.) | arXiv

2024 | Published | Journal Article | IST-REx-ID: 15250 |

Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport
D. Boytsov, G.M. Madej, G. Horn, N. Blaha, T. Köcher, H.H. Sitte, D.E. Siekhaus, C. Ziegler, W. Sandtner, M. Roblek, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 15146 |

Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix
B. Zens, F. Fäßler, J. Hansen, R. Hauschild, J. Datler, V.-V. Hodirnau, V. Zheden, J.H. Alanko, M.K. Sixt, F.K. Schur, Journal of Cell Biology 223 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 14683 |

Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry
N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 14794 |

Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers
A.H. Hansen, S. Hippenmeyer, STAR Protocols 5 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Thesis | IST-REx-ID: 15101 |

Developmental transformation of nanodomain coupling between Ca2+ channels and release sensors at a central GABAergic synapse
J. Chen, Developmental Transformation of Nanodomain Coupling between Ca2+ Channels and Release Sensors at a Central GABAergic Synapse, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Conference Paper | IST-REx-ID: 17411 |

PEFLL: Personalized federated learning by learning to learn
J.A. Scott, H. Zakerinia, C. Lampert, in:, 12th International Conference on Learning Representations, OpenReview, 2024.

[Published Version] View | Files available | arXiv

2024 | Published | Journal Article | IST-REx-ID: 14843

Developmental transformation of Ca2+ channel-vesicle nanotopography at a central GABAergic synapse
J. Chen, W. Kaufmann, C. Chen, itaru Arai, O. Kim, R. Shigemoto, P.M. Jonas, Neuron 112 (2024) 755–771.e9.

View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 15257 |

Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism
I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 15118

Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division
P. Nußbaum, D. Kureisaite-Ciziene, D. Bellini, C. Van Der Does, M. Kojic, N. Taib, A. Yeates, M. Tourte, S. Gribaldo, M. Loose, J. Löwe, S.V. Albers, Nature Microbiology 9 (2024) 698–711.

View | DOI | PubMed | Europe PMC

2024 | Published | Thesis | IST-REx-ID: 15020 |

Genetic information and biological optimization
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Submitted | Preprint | IST-REx-ID: 18689 |

Super-resolution expansion microscopy in plant roots
M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2024 | Published | Journal Article | IST-REx-ID: 15084 |

GABAB receptors induce phasic release from medial habenula terminals through activity-dependent recruitment of release-ready vesicles
P. Koppensteiner, P. Bhandari, C. Önal, C. Borges Merjane, E. Le Monnier, U. Roy, Y. Nakamura, T. Sadakata, M. Sanbo, M. Hirabayashi, J. Rhee, N. Brose, P.M. Jonas, R. Shigemoto, Proceedings of the National Academy of Sciences 121 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 17183 |

Emergent macroscopic bistability induced by a single superconducting qubit
R. Sett, F. Hassani, D.T. Phan, S. Barzanjeh, A. Vukics, J.M. Fink, PRX Quantum 5 (2024).

[Published Version] View | Files available | DOI | arXiv

2024 | Published | Journal Article | IST-REx-ID: 14846 |

Friction forces determine cytoplasmic reorganization and shape changes of ascidian oocytes upon fertilization
S. Caballero Mancebo, R. Shinde, M. Bolger-Munro, M. Peruzzo, G. Szep, I. Steccari, D. Labrousse Arias, V. Zheden, J. Merrin, A. Callan-Jones, R. Voituriez, C.-P.J. Heisenberg, Nature Physics 20 (2024) 310–321.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 15048 |

Robust axis elongation by Nodal-dependent restriction of BMP signaling
A. Schauer, K. Pranjic-Ferscha, R. Hauschild, C.-P.J. Heisenberg, Development 151 (2024) 1–18.

[Published Version] View | Files available | DOI

2024 | Published | Thesis | IST-REx-ID: 14711 |

Local adaptation, genetic load and extinction in metapopulations
O.O. Olusanya, Local Adaptation, Genetic Load and Extinction in Metapopulations, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 12875 |

Multipotent progenitors instruct ontogeny of the superior colliculus
G.T. Cheung, F. Pauler, P. Koppensteiner, T. Krausgruber, C. Streicher, M. Schrammel, N.Y. Özgen, A. Ivec, C. Bock, R. Shigemoto, S. Hippenmeyer, Neuron 112 (2024) 230–246.e11.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 14795 |

Adhesion-induced cortical flows pattern E-cadherin-mediated cell contacts
F.N. Arslan, E.B. Hannezo, J. Merrin, M. Loose, C.-P.J. Heisenberg, Current Biology 34 (2024) 171–182.e8.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 14435

A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries
G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C. Zhang, J. Li, J. Li, L. Ci, Y. Tian, M. Ibáñez, A. Cabot, Advanced Materials 36 (2024).

View | DOI | WoS | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 14793 |

Parity-conserving Cooper-pair transport and ideal superconducting diode in planar germanium
M. Valentini, O. Sagi, L. Baghumyan, T. de Gijsel, J. Jung, S. Calcaterra, A. Ballabio, J.L. Aguilera Servin, K. Aggarwal, M. Janik, T. Adletzberger, R. Seoane Souto, M. Leijnse, J. Danon, C. Schrade, E. Bakkers, D. Chrastina, G. Isella, G. Katsaros, Nature Communications 15 (2024).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2023 | Published | Thesis | IST-REx-ID: 14697 |

Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function
J.A. Stopp, Neutrophils on the Hunt: Migratory Strategies Employed by Neutrophils to Fulfill Their Effector Function, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 14651 |

Investigating inbreeding depression and the self-incompatibility locus of Antirrhinum majus
L.S. Arathoon, Investigating Inbreeding Depression and the Self-Incompatibility Locus of Antirrhinum Majus, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Submitted | Preprint | IST-REx-ID: 14644 |

Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, A.P. Testa Salmazo, C. Bernecky, (n.d.).

[Submitted Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 14719

Nanostructured Li₂S cathodes for silicon-sulfur batteries
H. Mollania, C. Zhang, R. Du, X. Qi, J. Li, S. Horta, M. Ibáñez, C. Keller, P. Chenevier, M. Oloomi-Buygi, A. Cabot, ACS Applied Materials and Interfaces 15 (2023) 58462–58475.

View | DOI

2023 | Published | Journal Article | IST-REx-ID: 13314 |

Chiral and nematic phases of flexible active filaments
Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G. Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, Nature Physics 19 (2023) 1916–1926.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2023 | Published | Journal Article | IST-REx-ID: 14613 |

The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2023 | Published | Thesis | IST-REx-ID: 14641 |

Adaptive mutation in E. coli modulated by luxS
M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Research Data | IST-REx-ID: 14562 |

Research data of the publication "ArpC5 isoforms regulate Arp2/3 complex-dependent protrusion through differential Ena/VASP positioning"
F.K. Schur, (2023).

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 14434

A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries
R. He, L. Yang, Y. Zhang, D. Jiang, S. Lee, S. Horta, Z. Liang, X. Lu, A. Ostovari Moghaddam, J. Li, M. Ibáñez, Y. Xu, Y. Zhou, A. Cabot, Advanced Materials 35 (2023).

View | DOI | WoS | PubMed | Europe PMC

2023 | Published | Thesis | IST-REx-ID: 14530 |

Synchronization in collectively moving active matter
M. Riedl, Synchronization in Collectively Moving Active Matter, Institute of Science and Technology Austria, 2023.

[Updated Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 14547 |

Resonant microwave spectroscopy of Al-InAs
D.T. Phan, Resonant Microwave Spectroscopy of Al-InAs, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 14510 |

Mechanism of clathrin-coated vesicle formation during endocytosis in plants
N. Gnyliukh, Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 14032 |

Superconductivity from a melted insulator in Josephson junction arrays
S. Mukhopadhyay, J.L. Senior, J. Saez Mollejo, D. Puglia, M. Zemlicka, J.M. Fink, A.P. Higginbotham, Nature Physics 19 (2023) 1630–1635.

[Published Version] View | Files available | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 14363 |

Mitochondrial network adaptations of microglia reveal sex-specific stress response after injury and UCP2 knockout
M.E. Maes, G. Colombo, F.E. Schoot Uiterkamp, F. Sternberg, A. Venturino, E.E. Pohl, S. Siegert, IScience 26 (2023).

2023 | Published | Journal Article | IST-REx-ID: 14517 |

Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses
M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, Physical Review Applied 20 (2023).

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2023 | Submitted | Preprint | IST-REx-ID: 14591 |

Role of dynamin-related proteins 2 and SH3P2 in clathrin-mediated endocytosis in plants
N. Gnyliukh, A.J. Johnson, M.-K. Nagel, A. Monzer, A. Hlavata, E. Isono, M. Loose, J. Friml, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2023 | Published | Thesis | IST-REx-ID: 14280 |

Spatiotemporal signaling during assembly of the bacterial divisome
P. Radler, Spatiotemporal Signaling during Assembly of the Bacterial Divisome, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 13188 |

The design space of Kirchhoff rods
C. Hafner, B. Bickel, ACM Transactions on Graphics 42 (2023).

[Submitted Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 14323

Regulation of neural progenitor survival by Shh and BMP in the developing spinal cord
K. Kuzmicz-Kowalska, Regulation of Neural Progenitor Survival by Shh and BMP in the Developing Spinal Cord, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 14361 |

Synchronization in collectively moving inanimate and living active matter
M. Riedl, I.D. Mayer, J. Merrin, M.K. Sixt, B. Hof, Nature Communications 14 (2023).

2023 | Published | Journal Article | IST-REx-ID: 14341 |

Turbulence suppression by cardiac-cycle-inspired driving of pipe flow
D. Scarselli, J.M. Lopez Alonso, A. Varshney, B. Hof, Nature 621 (2023) 71–74.

[Submitted Version] View | Files available | DOI | PubMed | Europe PMC

2023 | Epub ahead of print | Journal Article | IST-REx-ID: 14257 |

Imaging brain tissue architecture across millimeter to nanometer scales
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology (2023).

[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS

2023 | Published | Journal Article | IST-REx-ID: 14255 |

The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells
J. Koch, Q. Xin, M. Obr, A. Schäfer, N. Rolfs, H.A. Anagho, A. Kudulyte, L. Woltereck, S. Kummer, J. Campos, Z.M. Uckeley, L. Bell-Sakyi, H.G. Kräusslich, F.K. Schur, C. Acuna, P.Y. Lozach, PLoS Pathogens 19 (2023).

2023 | Published | Thesis | IST-REx-ID: 13984 |

Individual and social immunity against viral infections in ants
A. Franschitz, Individual and Social Immunity against Viral Infections in Ants, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12696 |

Trade-offs between immunity and competitive ability in fighting ant males
S. Metzler, J. Kirchner, A.V. Grasse, S. Cremer, BMC Ecology and Evolution 23 (2023).

2023 | Research Data | IST-REx-ID: 13126 |

Research data for the publication "Imaging brain tissue architecture across millimeter to nanometer scales"
J.G. Danzl, (2023).

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 14040 |

The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis
Z. Zhao, I. Vercellino, J. Knoppová, R. Sobotka, J.W. Murray, P.J. Nixon, L.A. Sazanov, J. Komenda, Nature Communications 14 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 14077 |

Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 14240 |

Generalizing shallow water simulations with dispersive surface waves
S. Jeschke, C. Wojtan, ACM Transactions on Graphics 42 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Conference Abstract | IST-REx-ID: 14748

Unified treatment of contact, friction and shock-propagation in rigid body animation
Y.-L. Chen, M. Ly, C. Wojtan, in:, Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, Association for Computing Machinery, 2023.

View | DOI

2023 | Published | Journal Article | IST-REx-ID: 13267 |

Dense 4D nanoscale reconstruction of living brain tissue
P. Velicky, E. Miguel Villalba, J.M. Michalska, J. Lyudchik, D. Wei, Z. Lin, J. Watson, J. Troidl, J. Beyer, Y. Ben Simon, C.M. Sommer, W. Jahr, A. Cenameri, J. Broichhagen, S.G.N. Grant, P.M. Jonas, G. Novarino, H. Pfister, B. Bickel, J.G. Danzl, Nature Methods 20 (2023) 1256–1265.

2023 | Published | Journal Article | IST-REx-ID: 14082 |

ZnUMBA - a live imaging method to detect local barrier breaches
T. Higashi, R.E. Stephenson, C. Schwayer, K. Huljev, A.Y. Higashi, C.-P.J. Heisenberg, H. Chiba, A.L. Miller, Journal of Cell Science 136 (2023).

View | Files available | DOI | WoS

2023 | Published | Conference Paper | IST-REx-ID: 14458 |

SparseGPT: Massive language models can be accurately pruned in one-shot
E. Frantar, D.-A. Alistarh, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 10323–10337.

[Preprint] View | Files available | Download Preprint (ext.) | arXiv

2023 | Published | Conference Paper | IST-REx-ID: 14461 |

Quantized distributed training of large models with convergence guarantees
I. Markov, A. Vladu, Q. Guo, D.-A. Alistarh, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 24020–24044.

[Preprint] View | Files available | Download Preprint (ext.) | arXiv

2023 | Published | Journal Article | IST-REx-ID: 12984 |

Skin-Screen: A computational fabrication framework for color tattoos
M. Piovarci, A. Chapiro, B. Bickel, ACM Transactions on Graphics 42 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 13049 |

PCBend: Light up your 3D shapes with foldable circuit boards
M. Freire, M. Bhargava, C. Schreck, P.-A. Hugron, B. Bickel, S. Lefebvre, Transactions on Graphics 42 (2023).

[Submitted Version] View | Files available | DOI | WoS

2023 | Research Data | IST-REx-ID: 13116 |

Chiral and nematic phases of flexible active filaments
Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G. Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, (2023).

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 13286 |

Mesoscopic phenomena in hybrid semiconductor-superconductor nanodevices : From full-shell nanowires to two-dimensional hole gas in germanium
M. Valentini, Mesoscopic Phenomena in Hybrid Semiconductor-Superconductor Nanodevices : From Full-Shell Nanowires to Two-Dimensional Hole Gas in Germanium, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 13968 |

Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing
R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair, C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 13227 |

Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours
F. Hassani, M. Peruzzo, L. Kapoor, A. Trioni, M. Zemlicka, J.M. Fink, Nature Communications 14 (2023).

2023 | Published | Journal Article | IST-REx-ID: 13212 |

Distinct functions of TIR1 and AFB1 receptors in auxin signalling.
H. Chen, L. Li, M. Zou, L. Qi, J. Friml, Molecular Plant 16 (2023) 1117–1119.

2023 | Published | Journal Article | IST-REx-ID: 13096 |

Structural basis of NINJ1-mediated plasma membrane rupture in cell death
M. Degen, J.C. Santos, K. Pluhackova, G. Cebrero, S. Ramos, G. Jankevicius, E. Hartenian, U. Guillerm, S.A. Mari, B. Kohl, D.J. Müller, P. Schanda, T. Maier, C. Perez, C. Sieben, P. Broz, S. Hiller, Nature 618 (2023) 1065–1071.

[Published Version] View | Files available | DOI | WoS

2023 | Submitted | Preprint | IST-REx-ID: 13312 |

Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas
M. Valentini, O. Sagi, L. Baghumyan, T. de Gijsel, J. Jung, S. Calcaterra, A. Ballabio, J.A. Servin, K. Aggarwal, M. Janik, T. Adletzberger, R.S. Souto, M. Leijnse, J. Danon, C. Schrade, E. Bakkers, D. Chrastina, G. Isella, G. Katsaros, ArXiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2023 | Published | Journal Article | IST-REx-ID: 13264 |

Gate-tunable superconductor-semiconductor parametric amplifier
D.T. Phan, P. Falthansl-Scheinecker, U. Mishra, W.M. Strickland, D. Langone, J. Shabani, A.P. Higginbotham, Physical Review Applied 19 (2023).

2023 | Published | Journal Article | IST-REx-ID: 13202 |

Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons
K. Eguchi, E. Le Monnier, R. Shigemoto, The Journal of Neuroscience 43 (2023) 4197–4216.

2023 | Published | Journal Article | IST-REx-ID: 13127 |

Dynamic pathogen detection and social feedback shape collective hygiene in ants
B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).

2023 | Published | Thesis | IST-REx-ID: 13107 |

The metabolism of the developing brain : How large neutral amino acids modulate perinatal neuronal excitability and survival
L. Knaus, The Metabolism of the Developing Brain : How Large Neutral Amino Acids Modulate Perinatal Neuronal Excitability and Survival, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 13117 |

Tunable directional photon scattering from a pair of superconducting qubits
E. Redchenko, A.V. Poshakinskiy, R. Sett, M. Zemlicka, A.N. Poddubny, J.M. Fink, Nature Communications 14 (2023).

[Published Version] View | Files available | DOI | WoS | arXiv

2023 | Published | Thesis | IST-REx-ID: 13074 |

Efficiency and generalization of sparse neural networks
A. Krumes, Efficiency and Generalization of Sparse Neural Networks, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 13081 |

Epithelial dynamics during mouse neural tube development
L. Bocanegra, Epithelial Dynamics during Mouse Neural Tube Development, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Research Data | IST-REx-ID: 12817 |

Research data for the publication "Dense 4D nanoscale reconstruction of living brain tissue"
J.G. Danzl, (2023).

[Published Version] View | Files available | DOI

2023 | Research Data | IST-REx-ID: 12945 |

Data from: "Dynamic pathogen detection and social feedback shape collective hygiene in ants"
S. Cremer, (2023).

View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 13175 |

Cavity quantum electrooptics
R. Sahu, Cavity Quantum Electrooptics, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 12900

Cavity quantum electrooptics
R. Sahu, Cavity Quantum Electrooptics, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 12897 |

Inverse shape design with parametric representations: Kirchhoff Rods and parametric surface models
C. Hafner, Inverse Shape Design with Parametric Representations: Kirchhoff Rods and Parametric Surface Models, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 12891 |

Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic tissues
A. Schauer, Mesendoderm Formation in Zebrafish Gastrulation: The Role of Extraembryonic Tissues, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Conference Paper | IST-REx-ID: 17378 |

OPTQ: Accurate post-training quantization for generative pre-trained transformers
E. Frantar, S. Ashkboos, T. Hoefler, D.-A. Alistarh, in:, 11th International Conference on Learning Representations , International Conference on Learning Representations, 2023.

[Published Version] View | Files available

2023 | Published | Conference Paper | IST-REx-ID: 13053 |

CrAM: A Compression-Aware Minimizer
A. Krumes, A. Vladu, E. Kurtic, C. Lampert, D.-A. Alistarh, in:, 11th International Conference on Learning Representations , OpenReview, 2023.

[Published Version] View | Files available | Download Published Version (ext.) | arXiv

2023 | Published | Thesis | IST-REx-ID: 12885 |

Nanoparticle-based semiconductor solids: From synthesis to consolidation
M. Calcabrini, Nanoparticle-Based Semiconductor Solids: From Synthesis to Consolidation, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Book Chapter | IST-REx-ID: 13052

En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses
A.F. Leithner, J. Merrin, M.K. Sixt, in:, C. Baldari, M. Dustin (Eds.), The Immune Synapse, Springer Nature, New York, NY, 2023, pp. 137–147.

View | DOI | PubMed | Europe PMC

2023 | Published | Journal Article | IST-REx-ID: 12802 |

Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.

[Published Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 12826 |

Neural control of optic flow-based navigation in Drosophila melanogaster
V. Pokusaeva, Neural Control of Optic Flow-Based Navigation in Drosophila Melanogaster, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12830 |

A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish
K. Huljev, S. Shamipour, D.C. Nunes Pinheiro, F. Preusser, I. Steccari, C.M. Sommer, S. Naik, C.-P.J. Heisenberg, Developmental Cell 58 (2023) 582–596.e7.

[Published Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 12809 |

Plasticity in the cerebellum: What molecular mechanisms are behind physiological learning
C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are behind Physiological Learning, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12832

A CrMnFeCoNi high entropy alloy boosting oxygen evolution/reduction reactions and zinc-air battery performance
R. He, L. Yang, Y. Zhang, X. Wang, S. Lee, T. Zhang, L. Li, Z. Liang, J. Chen, J. Li, A. Ostovari Moghaddam, J. Llorca, M. Ibáñez, J. Arbiol, Y. Xu, A. Cabot, Energy Storage Materials 58 (2023) 287–298.

View | DOI | WoS

2023 | Published | Journal Article | IST-REx-ID: 12349 |

Panoramic visual statistics shape retina-wide organization of receptive fields
D. Gupta, W.F. Mlynarski, A.L. Sumser, O. Symonova, J. Svaton, M.A. Jösch, Nature Neuroscience 26 (2023) 606–614.

2023 | Published | Thesis | IST-REx-ID: 12726

Synchronization in collectively moving active matter
M. Riedl, Synchronization in Collectively Moving Active Matter, Institute of Science and Technology Austria, 2023.

View | Files available | DOI

2023 | Published | Thesis | IST-REx-ID: 12781 |

Structural and mechanistic study of bacterial complex I and its cyanobacterial ortholog
V. Kravchuk, Structural and Mechanistic Study of Bacterial Complex I and Its Cyanobacterial Ortholog, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12749

PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing
Cikes D, Elsayad K, Sezgin E, Koitai E, Ferenc T, Orthofer M, Yarwood R, Heinz LX, Sedlyarov V, Darwish-Miranda N, Taylor A, Grapentine S, al-Murshedi F, Abot A, Weidinger A, Kutchukian C, Sanchez C, Cronin SJF, Novatchkova M, Kavirayani A, Schuetz T, Haubner B, Haas L, Hagelkruys A, Jackowski S, Kozlov A, Jacquemond V, Knauf C, Superti-Furga G, Rullman E, Gustafsson T, McDermot J, Lowe M, Radak Z, Chamberlain JS, Bakovic M, Banka S, Penninger JM. 2023. PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing. Nature Metabolism.

View | DOI

2023 | Published | Thesis | IST-REx-ID: 12732 |

Ergodicity breaking in disordered and kinetically constrained quantum many-body systems
P. Brighi, Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems, Institute of Science and Technology Austria, 2023.

View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12759 |

Validation of a stereological method for estimating particle size and density from 2D projections with high accuracy
J.S. Rothman, C. Borges Merjane, N. Holderith, P.M. Jonas, R. Angus Silver, PLoS ONE 18 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 12716 |

To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism
L. Burnett, To Flee, or Not to Flee? Using Innate Defensive Behaviours to Investigate Rapid Perceptual Decision-Making through Subcortical Circuits in Mouse Models of Autism, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12543 |

Pathogen evasion of social immunity
M. Stock, B. Milutinovic, M. Hönigsberger, A.V. Grasse, F. Wiesenhofer, N. Kampleitner, M. Narasimhan, T. Schmitt, S. Cremer, Nature Ecology and Evolution 7 (2023) 450–460.

2023 | Published | Journal Article | IST-REx-ID: 12789 |

Accurate determination of the shapes of granular charge distributions
N. Mujica, S.R. Waitukaitis, Physical Review E 107 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 12491 |

Ultrastructural characterization of natively preserved extracellular matrix by cryo-electron tomography
B. Zens, Ultrastructural Characterization of Natively Preserved Extracellular Matrix by Cryo-Electron Tomography, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2023 | Research Data | IST-REx-ID: 12370 |

Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields
D. Gupta, A.L. Sumser, M.A. Jösch, (2023).

[Published Version] View | Files available | DOI

2023 | Published | Journal Article | IST-REx-ID: 12334 |

ArpC5 isoforms regulate Arp2/3 complex–dependent protrusion through differential Ena/VASP positioning
F. Fäßler, M. Javoor, J. Datler, H. Döring, F. Hofer, G.A. Dimchev, V.-V. Hodirnau, J. Faix, K. Rottner, F.K. Schur, Science Advances 9 (2023).

[Published Version] View | Files available | DOI | WoS

2023 | Published | Thesis | IST-REx-ID: 12470 |

A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy
J.M. Michalska, A Versatile Toolbox for the Comprehensive Analysis of Nervous Tissue Organization with Light Microscopy, Institute of Science and Technology Austria, 2023.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 12109 |

Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach
F. Pertl, J.C.A. Sobarzo Ponce, L.B. Shafeek, T. Cramer, S.R. Waitukaitis, Physical Review Materials 6 (2022).

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2022 | Published | Journal Article | IST-REx-ID: 12495 |

FLEA: Provably robust fair multisource learning from unreliable training data
E.B. Iofinova, N.H. Konstantinov, C. Lampert, Transactions on Machine Learning Research (2022).

[Published Version] View | Files available | Download Published Version (ext.) | arXiv

2022 | Published | Journal Article | IST-REx-ID: 12572 |

FLEA: Provably robust fair multisource learning from unreliable training data
E.B. Iofinova, N.H. Konstantinov, C. Lampert, Fg (2022).

[Published Version] View | Files available | Download Published Version (ext.)

2022 | Published | Journal Article | IST-REx-ID: 12117 |

Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay
V. Hübschmann, M. Korkut, S. Siegert, STAR Protocols 3 (2022).

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 12118 |

Majorana-like Coulomb spectroscopy in the absence of zero-bias peaks
M. Valentini, M. Borovkov, E. Prada, S. Martí-Sánchez, M. Botifoll, A.C. Hofmann, J. Arbiol, R. Aguado, P. San-Jose, G. Katsaros, Nature 612 (2022) 442–447.

2022 | Published | Journal Article | IST-REx-ID: 12209 |

Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming
D.C. Nunes Pinheiro, R. Kardos, E.B. Hannezo, C.-P.J. Heisenberg, Nature Physics 18 (2022) 1482–1493.

[Published Version] View | Files available | DOI | WoS

2022 | Published | Thesis | IST-REx-ID: 12378 |

MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes
G. Colombo, MorphOMICs, a Tool for Mapping Microglial Morphology, Reveals Brain Region- and Sex-Dependent Phenotypes, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 12142 |

Liability-scale heritability estimation for biobank studies of low-prevalence disease
S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics 109 (2022) 2009–2017.

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 12143 |

Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.

2022 | Published | Journal Article | IST-REx-ID: 12144 |

Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I. del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.

2022 | Published | Journal Article | IST-REx-ID: 11336 |

Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression
N. Amberg, F. Pauler, C. Streicher, S. Hippenmeyer, Science Advances 8 (2022).

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 12239 |

Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution
A.J. Johnson, W. Kaufmann, C.M. Sommer, T. Costanzo, D.A. Dahhan, S.Y. Bednarek, J. Friml, Molecular Plant 15 (2022) 1533–1542.

2022 | Published | Journal Article | IST-REx-ID: 12248 |

ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).

2022 | Published | Journal Article | IST-REx-ID: 12244 |

A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.

2022 | Published | Thesis | IST-REx-ID: 12368 |

Remodeling of E-cadherin-mediated contacts via cortical flows
F.N. Arslan, Remodeling of E-Cadherin-Mediated Contacts via Cortical Flows, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Thesis | IST-REx-ID: 12366 |

Controllable states of superconducting Qubit ensembles
E. Redchenko, Controllable States of Superconducting Qubit Ensembles, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Thesis | IST-REx-ID: 12358 |

Homogenizing yarn simulations: Large-scale mechanics, small-scale detail, and quantitative fitting
G. Sperl, Homogenizing Yarn Simulations: Large-Scale Mechanics, Small-Scale Detail, and Quantitative Fitting, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 12138 |

A universal coupling mechanism of respiratory complex I
V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A. Sazanov, Nature 609 (2022) 808–814.

2022 | Published | Journal Article | IST-REx-ID: 12288 |

Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling
A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).

2022 | Published | Journal Article | IST-REx-ID: 12291 |

ABP1–TMK auxin perception for global phosphorylation and auxin canalization
Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.

2022 | Published | Journal Article | IST-REx-ID: 12262 |

Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, C. Hetzmannseder, G. Zisser, C. Sailer, V. Kargas, M. Loibl, M. Gerhalter, L. Kofler, A.J. Warren, F. Stengel, D. Haselbach, H. Bergler, Nature Structural & Molecular Biology 29 (2022) 942–953.

2022 | Published | Journal Article | IST-REx-ID: 12082 |

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
M. Artan, M. Hartl, W. Chen, M. de Bono, Journal of Biological Chemistry 298 (2022).

2022 | Published | Journal Article | IST-REx-ID: 12261 |

Growth‐mediated negative feedback shapes quantitative antibiotic response
A. Angermayr, T.Y. Pang, G. Chevereau, K. Mitosch, M.J. Lercher, M.T. Bollenbach, Molecular Systems Biology 18 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 12065 |

Exclusive solution discharge in Li-O₂ batteries?
C. Prehal, S. Mondal, L. Lovicar, S.A. Freunberger, ACS Energy Letters 7 (2022) 3112–3119.

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 11705 |

Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance
C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition 61 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Thesis | IST-REx-ID: 11945 |

Chimeric G protein-coupled receptors mimic distinct signaling pathways and modulate microglia function
R. Schulz, Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling Pathways and Modulate Microglia Function, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Thesis | IST-REx-ID: 11879 |

Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature
C. Artner, Modulation of Auxin Transport via ZF Proteins Adjust Plant Response to High Ambient Temperature, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 11951 |

A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 11995 |

Chimeric GPCRs mimic distinct signaling pathways and modulate microglia responses
R. Schulz, M. Korkut, A. Venturino, G. Colombo, S. Siegert, Nature Communications 13 (2022).

2022 | Published | Journal Article | IST-REx-ID: 12174 |

Phenotypic and genetic spectrum of ATP6V1A encephalopathy: A disorder of lysosomal homeostasis
Guerrini R, Mei D, Szigeti MK, Pepe S, Koenig MK, Von Allmen G, Cho MT, McDonald K, Baker J, Bhambhani V, Powis Z, Rodan L, Nabbout R, Barcia G, Rosenfeld JA, Bacino CA, Mignot C, Power LH, Harris CJ, Marjanovic D, Møller RS, Hammer TB, Keski Filppula R, Vieira P, Hildebrandt C, Sacharow S, Maragliano L, Benfenati F, Lachlan K, Benneche A, Petit F, de Sainte Agathe JM, Hallinan B, Si Y, Wentzensen IM, Zou F, Narayanan V, Matsumoto N, Boncristiano A, la Marca G, Kato M, Anderson K, Barba C, Sturiale L, Garozzo D, Bei R, Masuelli L, Conti V, Novarino G, Fassio A. 2022. Phenotypic and genetic spectrum of ATP6V1A encephalopathy: A disorder of lysosomal homeostasis. Brain. 145(8), 2687–2703.

[Published Version] View | DOI | Download Published Version (ext.) | WoS

2022 | Published | Journal Article | IST-REx-ID: 11843 |

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, ELife 11 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 11734 |

Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses
R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry, A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).

2022 | Published | Journal Article | IST-REx-ID: 11736 |

Estimation of yarn-level simulation models for production fabrics
G. Sperl, R.M. Sánchez-Banderas, M. Li, C. Wojtan, M.A. Otaduy, ACM Transactions on Graphics 41 (2022).

[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS

2022 | Published | Journal Article | IST-REx-ID: 11478 |

A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation
K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler, T. Czech, S. Siegert, IScience 25 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 9794 |

Multitier mechanics control stromal adaptations in swelling lymph nodes
F.P. Assen, J. Abe, M. Hons, R. Hauschild, S. Shamipour, W. Kaufmann, T. Costanzo, G. Krens, M. Brown, B. Ludewig, S. Hippenmeyer, C.-P.J. Heisenberg, W. Weninger, E.B. Hannezo, S.A. Luther, J.V. Stein, M.K. Sixt, Nature Immunology 23 (2022) 1246–1255.

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 10791 |

Tissue-wide effects override cell-intrinsic gene function in radial neuron migration
A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 11411 |

Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, Genetics 221 (2022).

2022 | Published | Thesis | IST-REx-ID: 11473 |

Polarons in Bose gases and polar crystals: Some rigorous energy estimates
K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy Estimates, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 11469 |

Localization of a mobile impurity interacting with an Anderson insulator
P. Brighi, A. Michailidis, K. Kirova, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).

2022 | Published | Journal Article | IST-REx-ID: 11470 |

Propagation of many-body localization in an Anderson insulator
P. Brighi, A.A. Michailidis, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10841 |

Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.

2022 | Published | Journal Article | IST-REx-ID: 11155 |

Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs
M. Obr, W.J.H. Hagen, R.A. Dick, L. Yu, A. Kotecha, F.K. Schur, Journal of Structural Biology 214 (2022).

2022 | Published | Thesis | IST-REx-ID: 11393 |

Contextual fear learning induced changes in AMPA receptor subtypes along the proximodistal axis in dorsal hippocampus
M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes along the Proximodistal Axis in Dorsal Hippocampus, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 11373 |

In vitro reconstitution of Escherichia coli divisome activation
P. Radler, N.S. Baranova, P.R. Dos Santos Caldas, C.M. Sommer, M.D. Lopez Pelegrin, D. Michalik, M. Loose, Nature Communications 13 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 11341 |

Intron-mediated induction of phenotypic heterogeneity
M. Lukacisin, A. Espinosa-Cantú, M.T. Bollenbach, Nature 605 (2022) 113–118.

2022 | Published | Journal Article | IST-REx-ID: 11448 |

Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 10922 |

Worst-case rigidity analysis and optimization for assemblies with mechanical joints
Z. Liu, J. Hu, H. Xu, P. Song, R. Zhang, B. Bickel, C.-W. Fu, Computer Graphics Forum 41 (2022) 507–519.

[Submitted Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 11432 |

Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method
C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS

2022 | Published | Journal Article | IST-REx-ID: 10713 |

Cell division in tissues enables macrophage infiltration
M. Akhmanova, S. Emtenani, D. Krueger, A. György, M. Pereira Guarda, M. Vlasov, F. Vlasov, A. Akopian, A. Ratheesh, S. De Renzis, D.E. Siekhaus, Science 376 (2022) 394–396.

2022 | Published | Thesis | IST-REx-ID: 11196 |

Nanoarchitecture of hippocampal mossy fiber-CA3 pyramidal neuron synapses
O. Kim, Nanoarchitecture of Hippocampal Mossy Fiber-CA3 Pyramidal Neuron Synapses, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Thesis | IST-REx-ID: 11193 |

Transcriptional regulation by Dfos and BMP-signaling support tissue invasion of Drosophila immune cells
S. Wachner, Transcriptional Regulation by Dfos and BMP-Signaling Support Tissue Invasion of Drosophila Immune Cells, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Thesis | IST-REx-ID: 11128 |

Genetic basis of flower colour as a model for adaptive evolution
L. Matejovicova, Genetic Basis of Flower Colour as a Model for Adaptive Evolution, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Research Data | IST-REx-ID: 10934 |

In vitro reconstitution of Escherichia coli divisome activation
P. Radler, (2022).

[Submitted Version] View | Files available | DOI

2022 | Published | Journal Article | IST-REx-ID: 11160 |

CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10920 |

Dynamics of hole singlet-triplet qubits with large g-factor differences
D. Jirovec, P.M. Mutter, A.C. Hofmann, A. Crippa, M. Rychetsky, D.L. Craig, J. Kukucka, F. Martins, A. Ballabio, N. Ares, D. Chrastina, G. Isella, G. Burkard, G. Katsaros, Physical Review Letters 128 (2022).

[Published Version] View | Files available | DOI | WoS | arXiv

2022 | Published | Journal Article | IST-REx-ID: 10918 |

Macrophage mitochondrial bioenergetics and tissue invasion are boosted by an Atossa-Porthos axis in Drosophila
S. Emtenani, E.T. Martin, A. György, J. Bicher, J.-W. Genger, T. Köcher, M. Akhmanova, M. Pereira Guarda, M. Roblek, A. Bergthaler, T.R. Hurd, P. Rangan, D.E. Siekhaus, The Embo Journal 41 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 10851 |

Detecting induced p±ip pairing at the Al-InAs interface with a quantum microwave circuit
D.T. Phan, J.L. Senior, A. Ghazaryan, M. Hatefipour, W.M. Strickland, J. Shabani, M. Serbyn, A.P. Higginbotham, Physical Review Letters 128 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10924 |

Quantum-enabled operation of a microwave-optical interface
R. Sahu, W.J. Hease, A.R. Rueda Sanchez, G.M. Arnold, L. Qiu, J.M. Fink, Nature Communications 13 (2022).

[Published Version] View | Files available | DOI | WoS | arXiv

2022 | Published | Journal Article | IST-REx-ID: 10639 |

The Orthobunyavirus Germiston enters host cells from late endosomes
S. Windhaber, Q. Xin, Z.M. Uckeley, J. Koch, M. Obr, C. Garnier, C. Luengo-Guyonnot, M. Duboeuf, F.K. Schur, P.-Y. Lozach, Journal of Virology 96 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10826 |

Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans
G. Valperga, M. de Bono, ELife 11 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10766 |

Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells
J. Slovakova, M.K. Sikora, F.N. Arslan, S. Caballero Mancebo, G. Krens, W. Kaufmann, J. Merrin, C.-P.J. Heisenberg, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 10712 |

The solute carrier MFSD1 decreases β1 integrin’s activation status and thus tumor metastasis
M. Roblek, J. Bicher, M. van Gogh, A. György, R. Seeböck, B. Szulc, M. Damme, M. Olczak, L. Borsig, D.E. Siekhaus, Frontiers in Oncology 12 (2022).

[Published Version] View | Files available | DOI | WoS

2022 | Published | Thesis | IST-REx-ID: 10727 |

Pathogen-mediated sexual selection and immunization in ant colonies
S. Metzler, Pathogen-Mediated Sexual Selection and Immunization in Ant Colonies, Institute of Science and Technology Austria, 2022.

[Published Version] View | Files available | DOI

2022 | Published | Conference Paper | IST-REx-ID: 10752

Overcoming rare-language discrimination in multi-lingual sentiment analysis
J. Lampert, C. Lampert, in:, 2021 IEEE International Conference on Big Data, IEEE, 2022, pp. 5185–5192.

View | DOI | WoS

2022 | Published | Journal Article | IST-REx-ID: 10703 |

WASp triggers mechanosensitive actin patches to facilitate immune cell migration in dense tissues
F. Gaertner, P. Reis-Rodrigues, I. de Vries, M. Hons, J. Aguilera, M. Riedl, A.F. Leithner, S. Tasciyan, A. Kopf, J. Merrin, V. Zheden, W. Kaufmann, R. Hauschild, M.K. Sixt, Developmental Cell 57 (2022) 47–62.e9.

2022 | Published | Journal Article | IST-REx-ID: 10709 |

Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila
V. Belyaeva, S. Wachner, A. György, S. Emtenani, I. Gridchyn, M. Akhmanova, M. Linder, M. Roblek, M. Sibilia, D.E. Siekhaus, PLoS Biology 20 (2022) e3001494.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2022 | Published | Journal Article | IST-REx-ID: 10614 |

2022 | Published | Journal Article | IST-REx-ID: 10654 |

Phase transition to turbulence in spatially extended shear flows
L. Klotz, G.M. Lemoult, K. Avila, B. Hof, Physical Review Letters 128 (2022).

2022 | Published | Journal Article | IST-REx-ID: 10284 |

Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies
B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer, Ecology Letters 25 (2022) 89–100.

2021 | Published | Journal Article | IST-REx-ID: 10123 |

The importance of surface adsorbates in solution‐processed thermoelectric materials: The case of SnSe
Y. Liu, M. Calcabrini, Y. Yu, A. Genç, C. Chang, T. Costanzo, T. Kleinhanns, S. Lee, J. Llorca, O. Cojocaru‐Mirédin, M. Ibáñez, Advanced Materials 33 (2021).

2021 | Published | Journal Article | IST-REx-ID: 10606 |

Combined effect of cell geometry and polarity domains determines the orientation of unequal division
B.G. Godard, R. Dumollard, C.-P.J. Heisenberg, A. Mcdougall, ELife 10 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 10565 |

Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain
A. Venturino, S. Siegert, STAR Protocols 2 (2021).

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 10816 |

How connectivity rules and synaptic properties shape the efficacy of pattern separation in the entorhinal cortex–dentate gyrus–CA3 network
J. Guzmán, A. Schlögl, C. Espinoza Martinez, X. Zhang, B. Suter, P.M. Jonas, Nature Computational Science 1 (2021) 830–842.

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

2021 | Published | Journal Article | IST-REx-ID: 9887 |

The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis
A.J. Johnson, D.A. Dahhan, N. Gnyliukh, W. Kaufmann, V. Zheden, T. Costanzo, P. Mahou, M. Hrtyan, J. Wang, J.L. Aguilera Servin, D. van Damme, E. Beaurepaire, M. Loose, S.Y. Bednarek, J. Friml, Proceedings of the National Academy of Sciences 118 (2021).

2021 | Published | Journal Article | IST-REx-ID: 10655 |

Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment
M.E. Maes, G.M. Wögenstein, G. Colombo, R. Casado Polanco, S. Siegert, Molecular Therapy - Methods and Clinical Development 23 (2021) 210–224.

[Published Version] View | Files available | DOI | WoS

2021 | Published | Conference Paper | IST-REx-ID: 11458 |

AC/DC: Alternating Compressed/DeCompressed training of deep neural networks
A. Krumes, E.B. Iofinova, A. Vladu, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, Curran Associates, 2021, pp. 8557–8570.

[Published Version] View | Files available | Download Published Version (ext.) | arXiv

2021 | Published | Journal Article | IST-REx-ID: 10535 |

Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).

2021 | Published | Journal Article | IST-REx-ID: 9928 |

Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction
M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, PRX Quantum 2 (2021) 040341.

[Published Version] View | Files available | DOI | WoS | arXiv

2021 | Published | Thesis | IST-REx-ID: 10303 |

Role of hormones in nitrate regulated growth
R. Abualia, Role of Hormones in Nitrate Regulated Growth, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Thesis | IST-REx-ID: 10307 |

Pathogenic Escherichia coli hijack the host immune response
K. Tomasek, Pathogenic Escherichia Coli Hijack the Host Immune Response, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 10223 |

Cell surface and intracellular auxin signalling for H⁺ fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.

2021 | Published | Journal Article | IST-REx-ID: 10321 |

Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers
N. Amberg, S. Hippenmeyer, STAR Protocols 2 (2021).

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 10290 |

Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data
G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Thesis | IST-REx-ID: 10199 |

Improved verification techniques for concurrent systems
V. Toman, Improved Verification Techniques for Concurrent Systems, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Book Chapter | IST-REx-ID: 10268

Automated time-lapse imaging and manipulation of cell divisions in Arabidopsis roots by vertical-stage confocal microscopy
L. Hörmayer, J. Friml, M. Glanc, in:, Plant Cell Division, Humana Press, 2021, pp. 105–114.

View | DOI | PubMed | Europe PMC

2021 | Submitted | Preprint | IST-REx-ID: 10316 |

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2021 | Published | Journal Article | IST-REx-ID: 10146

Structure and assembly of the mammalian mitochondrial supercomplex CIII₂CIV
I. Vercellino, L.A. Sazanov, Nature 598 (2021) 364–367.

2021 | Published | Journal Article | IST-REx-ID: 9376 |

Computational design of planar multistable compliant structures
R. Zhang, T. Auzinger, B. Bickel, ACM Transactions on Graphics 40 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Thesis | IST-REx-ID: 10058 |

Singlet-Triplet qubits and spin-orbit interaction in 2-dimensional Ge hole gases
D. Jirovec, Singlet-Triplet Qubits and Spin-Orbit Interaction in 2-Dimensional Ge Hole Gases, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Thesis | IST-REx-ID: 10030 |

Discrete-to-continuum limits of transport problems and gradient flows in the space of measures
L. Portinale, Discrete-to-Continuum Limits of Transport Problems and Gradient Flows in the Space of Measures, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 10166 |

Transitions to asexuality and evolution of gene expression in Artemia brine shrimp
A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).

2021 | Published | Journal Article | IST-REx-ID: 10073 |

Enhanced thermoelectric performance by surface engineering in SnTe-PbS nanocomposites
C. Chang, M. Ibáñez, Materials 14 (2021).

2021 | Published | Thesis | IST-REx-ID: 9992 |

Wound healing in the Arabidopsis root meristem
L. Hörmayer, Wound Healing in the Arabidopsis Root Meristem, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Accepted | Preprint | IST-REx-ID: 10095 |

Cell surface and intracellular auxin signalling for H+-fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2021 | Published | Thesis | IST-REx-ID: 9920 |

Geometric superinductors and their applications in circuit quantum electrodynamics
M. Peruzzo, Geometric Superinductors and Their Applications in Circuit Quantum Electrodynamics, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 9818 |

Mechanics-aware deformation of yarn pattern geometry
G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 40 (2021).

[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS

2021 | Published | Journal Article | IST-REx-ID: 9907 |

Cardiolipin-containing lipid membranes attract the bacterial cell division protein diviva
N. Labajová, N.S. Baranova, M. Jurásek, R. Vácha, M. Loose, I. Barák, International Journal of Molecular Sciences 22 (2021).

2021 | Published | Journal Article | IST-REx-ID: 8909 |

A singlet triplet hole spin qubit in planar Ge
D. Jirovec, A.C. Hofmann, A. Ballabio, P.M. Mutter, G. Tavani, M. Botifoll, A. Crippa, J. Kukucka, O. Sagi, F. Martins, J. Saez Mollejo, I. Prieto Gonzalez, M. Borovkov, J. Arbiol, D. Chrastina, G. Isella, G. Katsaros, Nature Materials 20 (2021) 1106–1112.

2021 | Published | Thesis | IST-REx-ID: 9728 |

Transition to turbulence and drag reduction in particle-laden pipe flows
N. Agrawal, Transition to Turbulence and Drag Reduction in Particle-Laden Pipe Flows, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Submitted | Preprint | IST-REx-ID: 10066 |

Cross-architecture tuning of silicon and SiGe-based quantum devices using machine learning
Severin B, Lennon DT, Camenzind LC, Vigneau F, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella G, Kruijf M de, Carballido MJ, Svab S, Kuhlmann AV, Braakman FR, Geyer S, Froning FNM, Moon H, Osborne MA, Sejdinovic D, Katsaros G, Zumbühl DM, Briggs GAD, Ares N. Cross-architecture tuning of silicon and SiGe-based quantum devices using machine learning. arXiv, 10.48550/arXiv.2107.12975.

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2021 | Submitted | Preprint | IST-REx-ID: 10029 |

Breakdown of induced p±ip pairing in a superconductor-semiconductor hybrid
D.T. Phan, J.L. Senior, A. Ghazaryan, M. Hatefipour, W.M. Strickland, J. Shabani, M. Serbyn, A.P. Higginbotham, ArXiv (n.d.).

[Preprint] View | Files available | Download Preprint (ext.) | arXiv

2021 | Published | Journal Article | IST-REx-ID: 9642 |

Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain
A. Venturino, R. Schulz, H. De Jesús-Cortés, M.E. Maes, B. Nagy, F. Reilly-Andújar, G. Colombo, R.J. Cubero, F.E. Schoot Uiterkamp, M.F. Bear, S. Siegert, Cell Reports 36 (2021).

2021 | Published | Journal Article | IST-REx-ID: 8910 |

Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states
M. Valentini, F. Peñaranda, A.C. Hofmann, M. Brauns, R. Hauschild, P. Krogstrup, P. San-Jose, E. Prada, R. Aguado, G. Katsaros, Science 373 (2021).

2021 | Published | Thesis | IST-REx-ID: 9623 |

Fertilization-induced deformations are controlled by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes
S. Caballero Mancebo, Fertilization-Induced Deformations Are Controlled by the Actin Cortex and a Mitochondria-Rich Subcortical Layer in Ascidian Oocytes, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 9603 |

A genome-wide library of MADM mice for single-cell genetic mosaic analysis
X. Contreras, N. Amberg, A. Davaatseren, A.H. Hansen, J. Sonntag, L. Andersen, T. Bernthaler, C. Streicher, A.-M. Heger, R.L. Johnson, L.A. Schwarz, L. Luo, T. Rülicke, S. Hippenmeyer, Cell Reports 35 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 10167 |

Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination
M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).

2021 | Published | Journal Article | IST-REx-ID: 9558 |

Coarse graining the state space of a turbulent flow using periodic orbits
G. Yalniz, B. Hof, N.B. Budanur, Physical Review Letters 126 (2021).

2021 | Published | Journal Article | IST-REx-ID: 9540 |

Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, I. Rössler, I. Klein, C. Hetzmannseder, G. Zisser, C.C. Gruber, K. Gruber, D. Haselbach, H. Bergler, Nature Communications 12 (2021).

2021 | Published | Journal Article | IST-REx-ID: 9449 |

A singlet-triplet hole spin qubit in planar Ge
D. Jirovec, A.C. Hofmann, A. Ballabio, P.M. Mutter, Giulio Tavani, M. Botifoll, A. Crippa, J. Kukucka, O. Sagi, F. Martins, J. Saez Mollejo, I. Prieto Gonzalez, M. Borovkov, J. Arbio, D. Chrastina, G. Isella, G. Katsaros, Nature Materials (2021).

[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv

2021 | Published | Journal Article | IST-REx-ID: 9438 |

Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous pre- and postsynaptic recording at cortical synapses
D.H. Vandael, Y. Okamoto, C. Borges Merjane, V.M. Vargas Barroso, B. Suter, P.M. Jonas, Nature Protocols 16 (2021) 2947–2967.

2021 | Published | Journal Article | IST-REx-ID: 9287 |

Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking
M. Narasimhan, M.C. Gallei, S. Tan, A.J. Johnson, I. Verstraeten, L. Li, L. Rodriguez Solovey, H. Han, E. Himschoot, R. Wang, S. Vanneste, J. Sánchez-Simarro, F. Aniento, M. Adamowski, J. Friml, Plant Physiology 186 (2021) 1122–1142.

2021 | Published | Thesis | IST-REx-ID: 9562 |

2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning
D. Kleindienst, 2B or Not 2B: Hippocampal Asymmetries Mediated by NMDA Receptor Subunit GluN2B C-Terminus and High-Throughput Image Analysis by Deep-Learning, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Thesis | IST-REx-ID: 9418 |

Underspecification in deep learning
M. Phuong, Underspecification in Deep Learning, Institute of Science and Technology Austria, 2021.

[Published Version] View | Files available | DOI

2021 | Published | Journal Article | IST-REx-ID: 9431 |

Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer
M. Obr, C.L. Ricana, N. Nikulin, J.-P.R. Feathers, M. Klanschnig, A. Thader, M.C. Johnson, V.M. Vogt, F.K. Schur, R.A. Dick, Nature Communications 12 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 9429 |

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, G.A. Dimchev, A. Nicolas, C.M. Sommer, C. Kreuzinger, C. Dotter, L. Knaus, Z. Dobler, E. Cacci, F.K. Schur, J.G. Danzl, G. Novarino, Nature Communications 12 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 9778 |

Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses
D.H. Vandael, Y. Okamoto, P.M. Jonas, Nature Communications 12 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 10559 |

Enhancement of proximity-induced superconductivity in a planar Ge hole gas
K. Aggarwal, A.C. Hofmann, D. Jirovec, I. Prieto Gonzalez, A. Sammak, M. Botifoll, S. Martí-Sánchez, M. Veldhorst, J. Arbiol, G. Scappucci, J. Danon, G. Katsaros, Physical Review Research 3 (2021).

[Published Version] View | Files available | DOI | arXiv

2021 | Published | Journal Article | IST-REx-ID: 9301 |

In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes
C. Prehal, A. Samojlov, M. Nachtnebel, L. Lovicar, M. Kriechbaum, H. Amenitsch, S.A. Freunberger, Proceedings of the National Academy of Sciences 118 (2021).

[Preprint] View | DOI | Download Preprint (ext.) | WoS

2021 | Published | Journal Article | IST-REx-ID: 9330 |

Presynaptic α2δ subunits are key organizers of glutamatergic synapses
C.L. Schöpf, C. Ablinger, S.M. Geisler, R.I. Stanika, M. Campiglio, W. Kaufmann, B. Nimmervoll, B. Schlick, J. Brockhaus, M. Missler, R. Shigemoto, G.J. Obermair, PNAS 118 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Journal Article | IST-REx-ID: 9316 |

Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions
N. Petridou, B. Corominas-Murtra, C.-P.J. Heisenberg, E.B. Hannezo, Cell 184 (2021) 1914–1928.e19.

2021 | Published | Journal Article | IST-REx-ID: 9205 |

Cryo-EM grid optimization for membrane proteins
D. Kampjut, J. Steiner, L.A. Sazanov, IScience 24 (2021).

2021 | Published | Journal Article | IST-REx-ID: 9250 |

Mechanism of mediated alkali peroxide oxidation and triplet versus singlet oxygen formation
Y.K. Petit, E. Mourad, C. Prehal, C. Leypold, A. Windischbacher, D. Mijailovic, C. Slugovc, S.M. Borisov, E. Zojer, S. Brutti, O. Fontaine, S.A. Freunberger, Nature Chemistry 13 (2021) 465–471.

2021 | Published | Journal Article | IST-REx-ID: 9290 |

AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells
M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930.

2021 | Published | Journal Article | IST-REx-ID: 9329 |

MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo
X. Zhang, A. Schlögl, D.H. Vandael, P.M. Jonas, Journal of Neuroscience Methods 357 (2021).

[Published Version] View | Files available | DOI | WoS

2021 | Published | Book Chapter | IST-REx-ID: 9245

Quantifying tissue tension in the granulosa layer after laser surgery
P. Xia, C.-P.J. Heisenberg, in:, R. Dosch (Ed.), Germline Development in the Zebrafish, Humana, 2021, pp. 117–128.

View | DOI | PubMed | Europe PMC

2021 | Submitted | Preprint | IST-REx-ID: 9238 |

A genetic program boosts mitochondrial function to power macrophage tissue invasion
S. Emtenani, E.T. Martin, A. György, J. Bicher, J.-W. Genger, T.R. Hurd, T. Köcher, A. Bergthaler, P. Rangan, D.E. Siekhaus, BioRxiv (n.d.).

[Preprint] View | DOI | Download Preprint (ext.)

2021 | Published | Journal Article | IST-REx-ID: 9168 |

The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes
C. Fraisse, H. Sachdeva, Genetics 217 (2021).

[Published Version] View | DOI | Download Published Version (ext.) | WoS

2021 | Published | Journal Article | IST-REx-ID: 9010 |

Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport
K. Ötvös, M. Marconi, A. Vega, J. O’Brien, A.J. Johnson, R. Abualia, L. Antonielli, J.C. Montesinos López, Y. Zhang, S. Tan, C. Cuesta, C. Artner, E. Bouguyon, A. Gojon, J. Friml, R.A. Gutiérrez, K.T. Wabnik, E. Benková, EMBO Journal 40 (2021).

2021 | Published | Journal Article | IST-REx-ID: 8931 |

Developmental roles of auxin binding protein 1 in Arabidopsis thaliana
Z. Gelová, M.C. Gallei, M. Pernisová, G. Brunoud, X. Zhang, M. Glanc, L. Li, J. Michalko, Z. Pavlovicova, I. Verstraeten, H. Han, J. Hajny, R. Hauschild, M. Čovanová, M. Zwiewka, L. Hörmayer, M. Fendrych, T. Xu, T. Vernoux, J. Friml, Plant Science 303 (2021).

2021 | Published | Journal Article | IST-REx-ID: 8988 |

In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1
C.F. Düllberg, A. Auer, N. Canigova, K. Loibl, M. Loose, PNAS 118 (2021).

2021 | Published | Journal Article | IST-REx-ID: 8582 |

Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.

[Published Version] View | Files available | DOI | WoS

2021 | Research Data | IST-REx-ID: 9389 |

Research data for "Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states"
M. Valentini, (2021).

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8983 |

Metabolic regulation of Drosophila macrophage tissue invasion
S. Emtenani, Metabolic Regulation of Drosophila Macrophage Tissue Invasion, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 8971 |

Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction
F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications 11 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8957

Apical relaxation during mitotic rounding promotes tension-oriented cell division
B.G. Godard, R. Dumollard, E. Munro, J. Chenevert, C. Hebras, A. Mcdougall, C.-P.J. Heisenberg, Developmental Cell 55 (2020) 695–706.

2020 | Published | Journal Article | IST-REx-ID: 8978 |

Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy
S. Laukoter, N. Amberg, F. Pauler, S. Hippenmeyer, STAR Protocols 1 (2020).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2020 | Submitted | Preprint | IST-REx-ID: 8831 |

Enhancement of proximity induced superconductivity in planar Germanium
K. Aggarwal, A.C. Hofmann, D. Jirovec, I. Prieto Gonzalez, A. Sammak, M. Botifoll, S. Marti-Sanchez, M. Veldhorst, J. Arbiol, G. Scappucci, G. Katsaros, ArXiv (n.d.).

[Submitted Version] View | Files available | arXiv

2020 | Published | Journal Article | IST-REx-ID: 8943 |

Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development
S. Tan, M. Di Donato, M. Glanc, X. Zhang, P. Klíma, J. Liu, A. Bailly, N. Ferro, J. Petrášek, M. Geisler, J. Friml, Cell Reports 33 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8586 |

3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy
F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8562 |

Computational design of cold bent glass façades
K. Gavriil, R. Guseinov, J. Perez Rodriguez, D. Pellis, P.M. Henderson, F. Rist, H. Pottmann, B. Bickel, ACM Transactions on Graphics 39 (2020).

[Submitted Version] View | Files available | DOI | WoS | arXiv

2020 | Research Data | IST-REx-ID: 8761 |

Supplementary data for "Computational design of cold bent glass façades"
R. Guseinov, (2020).

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 9114 |

Bidirectional electro-optic wavelength conversion in the quantum ground state
W.J. Hease, A.R. Rueda Sanchez, R. Sahu, M. Wulf, G.M. Arnold, H.G.L. Schwefel, J.M. Fink, PRX Quantum 1 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Preprint | IST-REx-ID: 9750 |

Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion
J. Slovakova, M.K. Sikora, S. Caballero Mancebo, G. Krens, W. Kaufmann, K. Huljev, C.-P.J. Heisenberg, BioRxiv (2020).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2020 | Published | Journal Article | IST-REx-ID: 8581

Cryo-EM structure of the entire mammalian F-type ATP synthase
G. Pinke, L. Zhou, L.A. Sazanov, Nature Structural and Molecular Biology 27 (2020) 1077–1085.

2020 | Published | Journal Article | IST-REx-ID: 8721 |

Receptor kinase module targets PIN-dependent auxin transport during canalization
J. Hajny, T. Prat, N. Rydza, L. Rodriguez Solovey, S. Tan, I. Verstraeten, D. Domjan, E. Mazur, E. Smakowska-Luzan, W. Smet, E. Mor, J. Nolf, B. Yang, W. Grunewald, G. Molnar, Y. Belkhadir, B. De Rybel, J. Friml, Science 370 (2020) 550–557.

2020 | Published | Journal Article | IST-REx-ID: 8737 |

The coupling mechanism of mammalian respiratory complex I
D. Kampjut, L.A. Sazanov, Science 370 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8755 |

Surpassing the resistance quantum with a geometric superinductor
M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, J.M. Fink, Physical Review Applied 14 (2020).

[Published Version] View | Files available | DOI | WoS | arXiv

2020 | Published | Thesis | IST-REx-ID: 8657 |

Perturbations of protein synthesis: from antibiotics to genetics and physiology
B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8620 |

Illuminating the role of Cul3 in autism spectrum disorder pathogenesis
J. Morandell, Illuminating the Role of Cul3 in Autism Spectrum Disorder Pathogenesis, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8589 |

Novel insights into PIN polarity regulation during Arabidopsis development
H. Han, Novel Insights into PIN Polarity Regulation during Arabidopsis Development, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 8162 |

Cell-type specificity of genomic imprinting in cerebral cortex
S. Laukoter, F. Pauler, R.J. Beattie, N. Amberg, A.H. Hansen, C. Streicher, T. Penz, C. Bock, S. Hippenmeyer, Neuron 107 (2020) 1160–1179.e9.

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8261 |

Selective routing of spatial information flow from input to output in hippocampal granule cells
X. Zhang, A. Schlögl, P.M. Jonas, Neuron 107 (2020) 1212–1225.

2020 | Published | Thesis | IST-REx-ID: 8366 |

Computational design of curved thin shells: From glass façades to programmable matter
R. Guseinov, Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Submitted | Preprint | IST-REx-ID: 8557 |

Cortical actin properties controlled by Drosophila Fos aid macrophage infiltration against surrounding tissue resistance
V. Belyaeva, S. Wachner, I. Gridchyn, M. Linder, S. Emtenani, A. György, M. Sibilia, D.E. Siekhaus, BioRxiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2020 | Published | Thesis | IST-REx-ID: 8386 |

Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability
R. Zhang, Structure-Aware Computational Design and Its Application to 3D Printable Volume Scattering, Mechanism, and Multistability, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8390 |

Leveraging structure in Computer Vision tasks for flexible Deep Learning models
A. Royer, Leveraging Structure in Computer Vision Tasks for Flexible Deep Learning Models, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8358 |

Organization and dynamics of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinkers
P.R. Dos Santos Caldas, Organization and Dynamics of Treadmilling Filaments in Cytoskeletal Networks of FtsZ and Its Crosslinkers, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8353 |

Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I
J. Steiner, Biochemical and Structural Investigation of the Mrp Antiporter, an Ancestor of Complex I, Institute of Science and Technology Austria, 2020.

View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8350 |

Bulk actin dynamics drive phase segregation in zebrafish oocytes
S. Shamipour, Bulk Actin Dynamics Drive Phase Segregation in Zebrafish Oocytes , Institute of Science and Technology Austria, 2020.

View | Files available | DOI

2020 | Published | Thesis | IST-REx-ID: 8340 |

Molecular mechanisms of mitochondrial redox-coupled proton pumping enzymes
D. Kampjut, Molecular Mechanisms of Mitochondrial Redox-Coupled Proton Pumping Enzymes, Institute of Science and Technology Austria, 2020.

View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 8529 |

Converting microwave and telecom photons with a silicon photonic nanomechanical interface
G.M. Arnold, M. Wulf, S. Barzanjeh, E. Redchenko, A.R. Rueda Sanchez, W.J. Hease, F. Hassani, J.M. Fink, Nature Communications 11 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 15061 |

Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin
N. Pinotsis, K. Zielinska, M. Babuta, J.L. Arolas, J. Kostan, M.B. Khan, C. Schreiner, A.P. Testa Salmazo, L. Ciccarelli, M. Puchinger, E.A. Gkougkoulia, E. de A. Ribeiro, T.C. Marlovits, A. Bhattacharya, K. Djinovic-Carugo, Proceedings of the National Academy of Sciences 117 (2020) 22101–22112.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2020 | Published | Thesis | IST-REx-ID: 8341 |

In vitro reconstitution of a Rab activation switch
U. Bezeljak, In Vitro Reconstitution of a Rab Activation Switch, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 8142 |

Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage
J.C. Montesinos López, A. Abuzeineh, A. Kopf, A. Juanes Garcia, K. Ötvös, J. Petrášek, M.K. Sixt, E. Benková, The Embo Journal 39 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8336 |

Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum
K. Kubiasova, J.C. Montesinos López, O. Šamajová, J. Nisler, V. Mik, H. Semerádová, L. Plíhalová, O. Novák, P. Marhavý, N. Cavallari, D. Zalabák, K. Berka, K. Doležal, P. Galuszka, J. Šamaj, M. Strnad, E. Benková, O. Plíhal, L. Spíchal, Nature Communications 11 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8337 |

Cell-surface receptors enable perception of extracellular cytokinins
I. Antoniadi, O. Novák, Z. Gelová, A.J. Johnson, O. Plíhal, R. Simerský, V. Mik, T. Vain, E. Mateo-Bonmatí, M. Karady, M. Pernisová, L. Plačková, K. Opassathian, J. Hejátko, S. Robert, J. Friml, K. Doležal, K. Ljung, C. Turnbull, Nature Communications 11 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8139 |

Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis
A.J. Johnson, N. Gnyliukh, W. Kaufmann, M. Narasimhan, G. Vert, S. Bednarek, J. Friml, Journal of Cell Science 133 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8001 |

Short-term plasticity at hippocampal mossy fiber synapses is induced by natural activity patterns and associated with vesicle pool engram formation
D.H. Vandael, C. Borges Merjane, X. Zhang, P.M. Jonas, Neuron 107 (2020) 509–521.

2020 | Published | Journal Article | IST-REx-ID: 8284 |

Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter
J. Steiner, L.A. Sazanov, ELife 9 (2020).

2020 | Research Data | IST-REx-ID: 8097 |

Analysis scripts and research data for the paper "Mechanisms of drug interactions between translation-inhibiting antibiotics"
B. Kavcic, (2020).

[Published Version] View | Files available | DOI

2020 | Published | Conference Paper | IST-REx-ID: 8724 |

On the sample complexity of adversarial multi-source PAC learning
N.H. Konstantinov, E. Frantar, D.-A. Alistarh, C. Lampert, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 5416–5425.

[Published Version] View | Files available | arXiv

2020 | Published | Journal Article | IST-REx-ID: 8535 |

Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces
T. Skrivan, A. Soderstrom, J. Johansson, C. Sprenger, K. Museth, C. Wojtan, ACM Transactions on Graphics 39 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8384 |

A model for soap film dynamics with evolving thickness
S. Ishida, P. Synak, F. Narita, T. Hachisuka, C. Wojtan, ACM Transactions on Graphics 39 (2020).

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS

2020 | Published | Journal Article | IST-REx-ID: 8385 |

Homogenized yarn-level cloth
G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 39 (2020).

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS

2020 | Published | Conference Paper | IST-REx-ID: 8188 |

Unsupervised object-centric video generation and decomposition in 3D
P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Curran Associates, 2020, pp. 3106–3117.

[Preprint] View | Download Preprint (ext.) | arXiv

2020 | Published | Journal Article | IST-REx-ID: 8002 |

Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots
L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences 117 (2020).

2020 | Published | Thesis | IST-REx-ID: 8032 |

Combinatorial width parameters for 3-dimensional manifolds
K. Huszár, Combinatorial Width Parameters for 3-Dimensional Manifolds, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 7885

Cellular locomotion using environmental topography
A. Reversat, F.R. Gärtner, J. Merrin, J.A. Stopp, S. Tasciyan, J.L. Aguilera Servin, I. de Vries, R. Hauschild, M. Hons, M. Piel, A. Callan-Jones, R. Voituriez, M.K. Sixt, Nature 582 (2020) 582–585.

View | Files available | DOI | WoS

2020 | Published | Preprint | IST-REx-ID: 8545 |

A genome-wide library of MADM mice for single-cell genetic mosaic analysis
X. Contreras, A. Davaatseren, N. Amberg, A.H. Hansen, J. Sonntag, L. Andersen, T. Bernthaler, A.-M. Heger, R. Johnson, L.A. Schwarz, L. Luo, T. Rülicke, S. Hippenmeyer, BioRxiv (2020).

[Preprint] View | DOI | Download Preprint (ext.)

2020 | Published | Thesis | IST-REx-ID: 7902 |

Genetic dissection of neural development in health and disease at single cell resolution
X. Contreras, Genetic Dissection of Neural Development in Health and Disease at Single Cell Resolution, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 5681 |

Simulating liquids on dynamically warping grids
I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions on Visualization and Computer Graphics 26 (2020) 2288–2302.

2020 | Published | Journal Article | IST-REx-ID: 7875 |

Microtubules control cellular shape and coherence in amoeboid migrating cells
A. Kopf, J. Renkawitz, R. Hauschild, I. Girkontaite, K. Tedford, J. Merrin, O. Thorn-Seshold, D. Trauner, H. Häcker, K.D. Fischer, E. Kiermaier, M.K. Sixt, The Journal of Cell Biology 219 (2020).

2020 | Published | Journal Article | IST-REx-ID: 8203 |

Zero field splitting of heavy-hole states in quantum dots
G. Katsaros, J. Kukucka, L. Vukušić, H. Watzinger, F. Gao, T. Wang, J.-J. Zhang, K. Held, Nano Letters 20 (2020) 5201–5206.

2020 | Published | Journal Article | IST-REx-ID: 7814 |

SCOPES: Sparking curiosity through Open-Source platforms in education and science
R.J. Beattie, S. Hippenmeyer, F. Pauler, Frontiers in Education 5 (2020).

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 7815 |

Lineage tracing and clonal analysis in developing cerebral cortex using mosaic analysis with double markers (MADM)
R.J. Beattie, C. Streicher, N. Amberg, G.T. Cheung, X. Contreras, A.H. Hansen, S. Hippenmeyer, Journal of Visual Experiments (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 8765 |

A practical method for animating anisotropic elastoplastic materials
C. Schreck, C. Wojtan, Computer Graphics Forum 39 (2020) 89–99.

[Submitted Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 7600 |

The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis
S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová, J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.

2020 | Published | Journal Article | IST-REx-ID: 7619 |

Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters
X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey, M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski, J. Friml, The Plant Cell 32 (2020) 1644–1664.

2020 | Published | Journal Article | IST-REx-ID: 7805 |

Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance
Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semerádová H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.

2020 | Published | Journal Article | IST-REx-ID: 7541 |

Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling
F. Gao, J.-H. Wang, H. Watzinger, H. Hu, M.J. Rančić, J.-Y. Zhang, T. Wang, Y. Yao, G.-L. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros, J.-J. Zhang, Advanced Materials 32 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 7472 |

Replay of behavioral sequences in the medial prefrontal cortex during rule switching
K. Käfer, M. Nardin, K. Blahna, J.L. Csicsvari, Neuron 106 (2020) P154–165.e6.

2020 | Published | Journal Article | IST-REx-ID: 7580 |

Stochastic activation and bistability in a Rab GTPase regulatory network
U. Bezeljak, H. Loya, B.M. Kaczmarek, T.E. Saunders, M. Loose, Proceedings of the National Academy of Sciences 117 (2020) 6504–6549.

[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS

2020 | Published | Journal Article | IST-REx-ID: 7343 |

Social immunity modulates competition between coinfecting pathogens
B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, Ecology Letters 23 (2020) 565–574.

[Published Version] View | Files available | DOI | WoS

2020 | Published | Thesis | IST-REx-ID: 7525 |

Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway
P. Bhandari, Localization and Functional Role of Cav2.3 in the Medial Habenula to Interpeduncular Nucleus Pathway, Institute of Science and Technology Austria, 2020.

[Published Version] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 7427 |

Salicylic acid targets protein phosphatase 2A to attenuate growth in plants
S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.

2020 | Research Data Reference | IST-REx-ID: 9723 |

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
R.A. Dick, C. Xu, D.R. Morado, V. Kravchuk, C.L. Ricana, T.D. Lyddon, A.M. Broad, J.R. Feathers, M.C. Johnson, V.M. Vogt, J.R. Perilla, J.A.G. Briggs, F.K. Schur, (2020).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2020 | Published | Journal Article | IST-REx-ID: 7464 |

2020 | Published | Journal Article | IST-REx-ID: 7490 |

Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).

2020 | Submitted | Preprint | IST-REx-ID: 7800 |

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, A. Nicolas, C.M. Sommer, C. Kreuzinger, L. Knaus, Z. Dobler, E. Cacci, J.G. Danzl, G. Novarino, BioRxiv (n.d.).

[Preprint] View | Files available | DOI

2020 | Published | Journal Article | IST-REx-ID: 7253 |

Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development
S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer, Nature Communications 11 (2020).

[Published Version] View | Files available | DOI | WoS

2020 | Published | Journal Article | IST-REx-ID: 7252

Functional Electron Microscopy (“Flash and Freeze”) of Identified Cortical Synapses in Acute Brain Slices
C. Borges Merjane, O. Kim, P.M. Jonas, Neuron (2020).

View | DOI

2019 | Published | Journal Article | IST-REx-ID: 7197 |

Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA
P.R. Dos Santos Caldas, M.D. Lopez Pelegrin, D.J.G. Pearce, N.B. Budanur, J. Brugués, M. Loose, Nature Communications 10 (2019).

[Published Version] View | Files available | DOI | WoS

2019 | Published | Thesis | IST-REx-ID: 7186 |

Mechanosensation of tight junctions depends on ZO-1 phase separation and flow
C. Schwayer, Mechanosensation of Tight Junctions Depends on ZO-1 Phase Separation and Flow, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Thesis | IST-REx-ID: 7172 |

Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana
M.K. Vasileva, Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 7026 |

Emergent gene expression responses to drug combinations predict higher-order drug interactions
M. Lukacisin, M.T. Bollenbach, Cell Systems 9 (2019) 423-433.e1-e3.

[Published Version] View | Files available | DOI | WoS

2019 | Published | Journal Article | IST-REx-ID: 6486 |

Relaminarization of pipe flow by means of 3D-printed shaped honeycombs
J. Kühnen, D. Scarselli, B. Hof, Journal of Fluids Engineering 141 (2019).

2019 | Published | Journal Article | IST-REx-ID: 7001 |

Mechanosensation of tight junctions depends on ZO-1 phase separation and flow
C. Schwayer, S. Shamipour, K. Pranjic-Ferscha, A. Schauer, M. Balda, M. Tada, K. Matter, C.-P.J. Heisenberg, Cell 179 (2019) 937–952.e18.

2019 | Submitted | Preprint | IST-REx-ID: 10065 |

Assessing the potential of Ge/SiGe quantum dots as hosts for singlet-triplet qubits
A.C. Hofmann, D. Jirovec, M. Borovkov, I. Prieto Gonzalez, A. Ballabio, J. Frigerio, D. Chrastina, G. Isella, G. Katsaros, ArXiv (n.d.).

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2019 | Published | Thesis | IST-REx-ID: 6947 |

Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking
F.P. Assen, Lymph Node Mechanics: Deciphering the Interplay between Stroma Contractility, Morphology and Lymphocyte Trafficking, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 6978 |

Geometry of transient chaos in streamwise-localized pipe flow turbulence
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2019 | Published | Journal Article | IST-REx-ID: 6897 |

Root gravity response module guides differential growth determining both root bending and apical hook formation in Arabidopsis
Q. Zhu, M. Gallemi, J. Pospíšil, P. Žádníková, M. Strnad, E. Benková, Development 146 (2019).

2019 | Published | Journal Article | IST-REx-ID: 6848 |

Structure and mechanism of mitochondrial proton-translocating transhydrogenase
D. Kampjut, L.A. Sazanov, Nature 573 (2019) 291–295.

2019 | Published | Thesis | IST-REx-ID: 6849 |

The role of CCK-interneurons in regulating hippocampal network dynamics
D.K. Rangel Guerrero, The Role of CCK-Interneurons in Regulating Hippocampal Network Dynamics, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 6859

Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase
L. Zhou, L.A. Sazanov, Science 365 (2019).

2019 | Published | Journal Article | IST-REx-ID: 6442 |

Fundamental solutions for water wave animation
C. Schreck, C. Hafner, C. Wojtan, ACM Transactions on Graphics 38 (2019).

[Submitted Version] View | Files available | DOI | WoS

2019 | Published | Journal Article | IST-REx-ID: 6755 |

Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome
M.A.L. Picard, B. Vicoso, D. Roquis, I. Bulla, R.C. Augusto, N. Arancibia, C. Grunau, J. Boissier, C. Cosseau, Genome Biology and Evolution 11 (2019) 1909–1922.

2019 | Published | Journal Article | IST-REx-ID: 6609 |

Stationary entangled radiation from micromechanical motion
S. Barzanjeh, E. Redchenko, M. Peruzzo, M. Wulf, D. Lewis, G.M. Arnold, J.M. Fink, Nature 570 (2019) 480–483.

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2019 | Published | Journal Article | IST-REx-ID: 6611 |

PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton
M. Glanc, M. Fendrych, J. Friml, Biomolecules 9 (2019).

2019 | Published | Thesis | IST-REx-ID: 6546 |

The role of a highly conserved major facilitator superfamily member in Drosophila embryonic macrophage migration
K. Valosková, The Role of a Highly Conserved Major Facilitator Superfamily Member in Drosophila Embryonic Macrophage Migration, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 6508 |

Bulk actin dynamics drive phase segregation in zebrafish oocytes
S. Shamipour, R. Kardos, S. Xue, B. Hof, E.B. Hannezo, C.-P.J. Heisenberg, Cell 177 (2019) 1463–1479.e18.

2019 | Published | Thesis | IST-REx-ID: 6392 |

Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory
M. Lukacisin, Quantitative Investigation of Gene Expression Principles through Combinatorial Drug Perturbation and Theory, IST Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Thesis | IST-REx-ID: 6435 |

Collective defenses of garden ants against a fungal pathogen
B.E. Casillas Perez, Collective Defenses of Garden Ants against a Fungal Pathogen, Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 6603 |

Re-activation of stem cell pathways for pattern restoration in plant wound healing
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2019 | Published | Journal Article | IST-REx-ID: 6351 |

Re-activation of stem cell pathways for pattern restoration in plant wound healing
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.

2019 | Published | Journal Article | IST-REx-ID: 6328 |

Nuclear positioning facilitates amoeboid migration along the path of least resistance
J. Renkawitz, A. Kopf, J.A. Stopp, I. de Vries, M.K. Driscoll, J. Merrin, R. Hauschild, E.S. Welf, G. Danuser, R. Fiolka, M.K. Sixt, Nature 568 (2019) 546–550.

2019 | Published | Journal Article | IST-REx-ID: 6418 |

Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.

[Published Version] View | Files available | DOI | WoS

2019 | Published | Journal Article | IST-REx-ID: 6187 |

A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion
K. Valosková, J. Bicher, M. Roblek, S. Emtenani, A. György, M. Misova, A. Ratheesh, P. Rodrigues, K. Shkarina, I.S.B. Larsen, S.Y. Vakhrushev, H. Clausen, D.E. Siekhaus, ELife 8 (2019).

[Published Version] View | Files available | DOI | WoS

2019 | Published | Journal Article | IST-REx-ID: 6087 |

Lateral inhibition in cell specification mediated by mechanical signals modulating TAZ activity
P. Xia, D.J. Gütl, V. Zheden, C.-P.J. Heisenberg, Cell 176 (2019) 1379–1392.e14.

2019 | Published | Journal Article | IST-REx-ID: 6046 |

Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).

2019 | Published | Journal Article | IST-REx-ID: 6025 |

Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration
D. Capek, M. Smutny, A.M. Tichy, M. Morri, H.L. Janovjak, C.-P.J. Heisenberg, ELife 8 (2019).

[Published Version] View | Files available | DOI | WoS

2019 | Published | Thesis | IST-REx-ID: 6269 |

Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants
M. Narasimhan, Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants , Institute of Science and Technology Austria, 2019.

[Published Version] View | Files available | DOI

2019 | Published | Journal Article | IST-REx-ID: 5789 |

Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling
N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 169–178.

2019 | Published | Journal Article | IST-REx-ID: 7406

Isolation of synaptic vesicles from genetically engineered cultured neurons
C. Mckenzie, M. Spanova, A.J. Johnson, S. Kainrath, V. Zheden, H.H. Sitte, H.L. Janovjak, Journal of Neuroscience Methods 312 (2019) 114–121.

View | DOI | WoS | PubMed | Europe PMC

2018 | Published | Thesis | IST-REx-ID: 6263 |

Genetic determinants of antibiotic resistance evolution
M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, Institute of Science and Technology Austria, 2018.

[Published Version] View | Files available | DOI

2018 | Published | Journal Article | IST-REx-ID: 3 |

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition
E. Deliu, N. Arecco, J. Morandell, C. Dotter, X. Contreras, C. Girardot, E. Käsper, A. Kozlova, K. Kishi, I. Chiaradia, K. Noh, G. Novarino, Nature Neuroscience 21 (2018) 1717–1727.

[Submitted Version] View | Files available | DOI | WoS

2018 | Published | Journal Article | IST-REx-ID: 23 |

Single-shot readout of hole spins in Ge
L. Vukušić, J. Kukucka, H. Watzinger, J.M. Milem, F. Schäffler, G. Katsaros, Nano Letters 18 (2018) 7141–7145.

2018 | Published | Journal Article | IST-REx-ID: 44 |

Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations
C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review B 98 (2018).

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2018 | Published | Journal Article | IST-REx-ID: 77 |

A germanium hole spin qubit
H. Watzinger, J. Kukucka, L. Vukušić, F. Gao, T. Wang, F. Schäffler, J. Zhang, G. Katsaros, Nature Communications 9 (2018).

[Published Version] View | Files available | DOI | WoS

2018 | Published | Journal Article | IST-REx-ID: 134 |

Water surface wavelets
S. Jeschke, T. Skrivan, M. Mueller Fischer, N. Chentanez, M. Macklin, C. Wojtan, ACM Transactions on Graphics 37 (2018).

[Published Version] View | Files available | DOI | WoS

2018 | Published | Journal Article | IST-REx-ID: 15 |

Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells
M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.

2018 | Published | Journal Article | IST-REx-ID: 308 |

Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration
A. Ratheesh, J. Bicher, M. Smutny, J. Veselá, E. Papusheva, G. Krens, W. Kaufmann, A. György, A.M. Casano, D.E. Siekhaus, Developmental Cell 45 (2018) 331–346.

2018 | Published | Thesis | IST-REx-ID: 323 |

Branched actin networks in dendritic cell biology
A.F. Leithner, Branched Actin Networks in Dendritic Cell Biology, Institute of Science and Technology Austria, 2018.

[Published Version] View | Files available | DOI

2018 | Published | Journal Article | IST-REx-ID: 402 |

Lymph node blood vessels provide exit routes for metastatic tumor cell dissemination in mice
M. Brown, F.P. Assen, A.F. Leithner, J. Abe, H. Schachner, G. Asfour, Z. Bagó Horváth, J. Stein, P. Uhrin, M.K. Sixt, D. Kerjaschki, Science 359 (2018) 1408–1411.

2018 | Published | Journal Article | IST-REx-ID: 328 |

Exceeding the asymptotic limit of polymer drag reduction
G.H. Choueiri, J.M. Lopez Alonso, B. Hof, Physical Review Letters 120 (2018).

[Preprint] View | DOI | Download Preprint (ext.) | WoS

2018 | Published | Journal Article | IST-REx-ID: 326 |

Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices
K. Sawada, R. Kawakami, R. Shigemoto, T. Nemoto, European Journal of Neuroscience 47 (2018) 1033–1042.

[Published Version] View | Files available | DOI | WoS

2018 | Published | Thesis | IST-REx-ID: 395 |

The branched chain amino acids in autism spectrum disorders
D.-C. Tarlungeanu, The Branched Chain Amino Acids in Autism Spectrum Disorders , Institute of Science and Technology Austria, 2018.

[Published Version] View | Files available | DOI

2018 | Published | Journal Article | IST-REx-ID: 544 |

Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues
A. György, M. Roblek, A. Ratheesh, K. Valosková, V. Belyaeva, S. Wachner, Y. Matsubayashi, B. Sanchez Sanchez, B. Stramer, D.E. Siekhaus, G3: Genes, Genomes, Genetics 8 (2018) 845–857.

[Published Version] View | Files available | DOI | WoS

2018 | Published | Journal Article | IST-REx-ID: 503

Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains
K. Tomasek, T. Bergmiller, C.C. Guet, Journal of Biotechnology 268 (2018) 40–52.

View | DOI | WoS

2018 | Published | Journal Article | IST-REx-ID: 437 |

Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration
A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K. Sixt, European Journal of Immunology 48 (2018) 1074–1077.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Book Chapter | IST-REx-ID: 1213

Single-molecule measurements to study polymerization dynamics of FtsZ-FtsA copolymers
N.S. Baranova, M. Loose, in:, A. Echard (Ed.), Cytokinesis, Academic Press, 2017, pp. 355–370.

View | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 749 |

Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central GABAergic synapses
C. Chen, R. Satterfield, S. Young, P.M. Jonas, Cell Reports 21 (2017) 2082–2089.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 804 |

Overcoming the limitations of the MARTINI force field in simulations of polysaccharides
P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS

2017 | Published | Journal Article | IST-REx-ID: 727

Load adaptation of lamellipodial actin networks
J. Mueller, G. Szep, M. Nemethova, I. de Vries, A. Lieber, C. Winkler, K. Kruse, J. Small, C. Schmeiser, K. Keren, R. Hauschild, M.K. Sixt, Cell 171 (2017) 188–200.

View | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 803 |

DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes
M. Samwer, M. Schneider, R. Hoefler, P.S. Schmalhorst, J. Jude, J. Zuber, D. Gerlic, Cell 170 (2017) 956–972.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 840 |

Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry
L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017) 5706–5710.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 470 |

Water wave packets
S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).

[Published Version] View | Files available | DOI

2017 | Published | Journal Article | IST-REx-ID: 946 |

Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 944

Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.

View | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 661 |

Friction forces position the neural anlage
M. Smutny, Z. Ákos, S. Grigolon, S. Shamipour, V. Ruprecht, D. Capek, M. Behrndt, E. Papusheva, M. Tada, B. Hof, T. Vicsek, G. Salbreux, C.-P.J. Heisenberg, Nature Cell Biology 19 (2017) 306–317.

2017 | Published | Journal Article | IST-REx-ID: 1067 |

The physical basis of coordinated tissue spreading in zebrafish gastrulation
H. Morita, S. Grigolon, M. Bock, G. Krens, G. Salbreux, C.-P.J. Heisenberg, Developmental Cell 40 (2017) 354–366.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 1087 |

Speed and structure of turbulent fronts in pipe flow
B. Song, D. Barkley, B. Hof, M. Avila, Journal of Fluid Mechanics 813 (2017) 1045–1059.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS

2017 | Published | Journal Article | IST-REx-ID: 1078 |

Light sheet fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 1118 |

Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo
J. Gan, S.-M. Weng, A. Pernia-Andrade, J.L. Csicsvari, P.M. Jonas, Neuron 93 (2017) 308–314.

[Published Version] View | Files available | DOI | WoS

2017 | Published | Journal Article | IST-REx-ID: 1117 |

Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse
C. Chen, itaru Arai, R. Satterield, S. Young, P.M. Jonas, Cell Reports 18 (2017) 723–736.

[Published Version] View | Files available | DOI | WoS

2016 | Published | Journal Article | IST-REx-ID: 1323 |

Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses
N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).

[Published Version] View | Files available | DOI

2016 | Published | Journal Article | IST-REx-ID: 1321 |

Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes
A.F. Leithner, A. Eichner, J. Müller, A. Reversat, M. Brown, J. Schwarz, J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild, F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt, Nature Cell Biology 18 (2016) 1253–1259.

[Submitted Version] View | Files available | DOI

2016 | Published | Journal Article | IST-REx-ID: 1350 |

Synaptic mechanisms of pattern completion in the hippocampal CA3 network
J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.

[Preprint] View | Files available | DOI

2016 | Published | Journal Article | IST-REx-ID: 1271 |

Steering cell migration by alternating blebs and actin-rich protrusions
A. Diz Muñoz, P. Romanczuk, W. Yu, M. Bergert, K. Ivanovitch, G. Salbreux, C.-P.J. Heisenberg, E. Paluch, BMC Biology 14 (2016).

[Published Version] View | Files available | DOI

2016 | Published | Book Chapter | IST-REx-ID: 1094

Immunogold protein localization on grid-glued freeze-fracture replicas
H. Harada, R. Shigemoto, in:, High-Resolution Imaging of Cellular Proteins, Springer, 2016, pp. 203–216.

View | DOI

2016 | Published | Journal Article | IST-REx-ID: 1100 |

Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation
K. Sako, S. Pradhan, V. Barone, Á. Inglés Prieto, P. Mueller, V. Ruprecht, D. Capek, S. Galande, H.L. Janovjak, C.-P.J. Heisenberg, Cell Reports 16 (2016) 866–877.

[Published Version] View | Files available | DOI

2016 | Published | Conference Paper | IST-REx-ID: 1363 |

Generalized non-reflecting boundaries for fluid re-simulation
M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.

[Published Version] View | Files available | DOI

2016 | Published | Thesis | IST-REx-ID: 1129 |

Quantitative analysis of haptotactic cell migration
J. Schwarz, Quantitative Analysis of Haptotactic Cell Migration, Institute of Science and Technology Austria, 2016.

[Published Version] View | Files available

2016 | Published | Journal Article | IST-REx-ID: 1492 |

Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation
P. Marhavý, J.C. Montesinos López, A. Abuzeineh, D. Van Damme, J. Vermeer, J. Duclercq, H. Rakusova, P. Marhavá, J. Friml, N. Geldner, E. Benková, Genes and Development 30 (2016) 471–483.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2016 | Published | Journal Article | IST-REx-ID: 1599 |

Polysialylation controls dendritic cell trafficking by regulating chemokine recognition
E. Kiermaier, C. Moussion, C. Veldkamp, R. Gerardy Schahn, I. de Vries, L. Williams, G. Chaffee, A. Phillips, F. Freiberger, R. Imre, D. Taleski, R. Payne, A. Braun, R. Förster, K. Mechtler, M. Mühlenhoff, B. Volkman, M.K. Sixt, Science 351 (2016) 186–190.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC

2016 | Published | Journal Article | IST-REx-ID: 1597

Quantitative analysis of dendritic cell haptotaxis
J. Schwarz, M.K. Sixt, Methods in Enzymology 570 (2016) 567–581.

View | DOI | PubMed | Europe PMC

2015 | Published | Journal Article | IST-REx-ID: 1537 |

Cortical contractility triggers a stochastic switch to fast amoeboid cell motility
V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.

[Published Version] View | Files available | DOI

2015 | Published | Journal Article | IST-REx-ID: 1993 |

Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host
M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, Proceedings of the Royal Society of London Series B Biological Sciences 282 (2015).

2015 | Published | Journal Article | IST-REx-ID: 1640 |

Cytokinin response factors regulate PIN-FORMED auxin transporters
M. Šimášková, J. O’Brien, M. Khan-Djamei, G. Van Noorden, K. Ötvös, A. Vieten, I. De Clercq, J. Van Haperen, C. Cuesta, K. Hoyerová, S. Vanneste, P. Marhavý, K.T. Wabnik, F. Van Breusegem, M. Nowack, A. Murphy, J. Friml, D. Weijers, T. Beeckman, E. Benková, Nature Communications 6 (2015).

[Submitted Version] View | Files available | DOI

2014 | Published | Thesis | IST-REx-ID: 1403

Forces driving epithelial spreading in zebrafish epiboly
M. Behrndt, Forces Driving Epithelial Spreading in Zebrafish Epiboly, IST Austria, 2014.

View | Files available

2013 | Published | Journal Article | IST-REx-ID: 2282 |

Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly
P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, C.-P.J. Heisenberg, Nature Cell Biology 15 (2013) 1405–1414.

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

2013 | Published | Thesis | IST-REx-ID: 1406

Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading
P. Campinho, Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading, Institute of Science and Technology Austria, 2013.

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2013 | Published | Journal Article | IST-REx-ID: 2944

Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.

View | Files available | DOI

2012 | Published | Journal Article | IST-REx-ID: 2962 |

A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC

2012 | Published | Journal Article | IST-REx-ID: 2951

Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Science 338 (2012) 253–256.

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2012 | Published | Journal Article | IST-REx-ID: 2950

Forces driving epithelial spreading in zebrafish gastrulation
M. Behrndt, G. Salbreux, P. Campinho, R. Hauschild, F. Oswald, J. Roensch, S. Grill, C.-P.J. Heisenberg, Science 338 (2012) 257–260.

View | Files available | DOI

2011 | Published | Journal Article | IST-REx-ID: 3396 |

Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.

[Published Version] View | Files available | DOI

2010 | Published | Journal Article | IST-REx-ID: 4157 |

Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC

2022 | Thesis | IST-REx-ID: 11896

View | Files available

2023 | Research Data | IST-REx-ID: 12373 |

Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields
D. Gupta, A.L. Sumser, M.A. Jösch, (2023).

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